CN186544

Overview
NameCN186544
Unique NameCN186544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length772
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9763 contig Csv1_Contig9763:288..1060. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186544 vs. ExPASy Swiss-Prot
Match: AGL9_PETHY (Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida GN=FBP2 PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 3.128e-54
Identity = 73/86 (84.88%), Postives = 79/86 (91.86%), Query Frame = -1
Query:  515 EALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLNK 772
            EALE+SSQQEYLKLKARYEALQRSQRNLLGE+LGPLNSKELESLERQLDMSLKQIRSTRTQ MLD L +LQ KE  L+EAN+TL +
Sbjct:   86 EALEISSQQEYLKLKARYEALQRSQRNLLGEDLGPLNSKELESLERQLDMSLKQIRSTRTQLMLDQLQDLQRKEHALNEANRTLKQ 171          

HSP 2 Score: 92.4337 bits (228), Expect = 3.128e-54
Identity = 47/72 (65.28%), Postives = 54/72 (75.00%), Query Frame = -3
Query:  261 QLMEGYQVNTLQLNPSAEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQPADPISVVTAGPSLNNYMQGWLP 476
            +LMEG  +N LQ   +A+D GYG +  Q QGD FFH LECEPTLQIGYQ  DPI+V  AGPS+NNYM GWLP
Sbjct:  172 RLMEGSTLN-LQWQQNAQDVGYGRQATQTQGDGFFHPLECEPTLQIGYQ-NDPITVGGAGPSVNNYMAGWLP 241          
BLAST of CN186544 vs. ExPASy Swiss-Prot
Match: SEP3_ARATH (Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana GN=SEP3 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.707e-42
Identity = 64/83 (77.11%), Postives = 76/83 (91.57%), Query Frame = -1
Query:  521 ALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTL 769
            A+ELSSQQEYLKLK RY+ALQR+QRNLLGE+LGPL++KELESLERQLD SLKQIR+ RTQ+MLD L +LQ KE++L+E NKTL
Sbjct:   89 AVELSSQQEYLKLKERYDALQRTQRNLLGEDLGPLSTKELESLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLTETNKTL 171          

HSP 2 Score: 66.2402 bits (160), Expect = 1.707e-42
Identity = 40/76 (52.63%), Postives = 47/76 (61.84%), Query Frame = -3
Query:  261 LQLMEGYQVNTLQLNPSAEDCG-YGLKPAQPQ--GDTFFHALECEPTLQIGYQPADPISVVTAGPSLNNYMQGWLP 479
            L+L +GYQ+  LQLNP+ E+   YG    Q Q     FF  LECEP LQIGYQ       + AGPS+NNYM GWLP
Sbjct:  173 LRLADGYQM-PLQLNPNQEEVDHYGRHHHQQQQHSQAFFQPLECEPILQIGYQGQQ--DGMGAGPSVNNYMLGWLP 245          
BLAST of CN186544 vs. ExPASy Swiss-Prot
Match: AGL9_SINAL (Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba GN=AGL9 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.418e-41
Identity = 63/83 (75.90%), Postives = 75/83 (90.36%), Query Frame = -1
Query:  521 ALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTL 769
            A+ELSSQQEYLKLK RY+ALQR+QRNLLGE+LGPL++KELE LERQLD SLKQIR+ RTQ+MLD L +LQ KE++L+E NKTL
Sbjct:   89 AVELSSQQEYLKLKERYDALQRTQRNLLGEDLGPLSTKELELLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLNETNKTL 171          

HSP 2 Score: 65.4698 bits (158), Expect = 1.418e-41
Identity = 40/78 (51.28%), Postives = 48/78 (61.54%), Query Frame = -3
Query:  261 LQLMEGYQVNTLQLNPSAED--CGYGLKPAQPQGDT---FFHALECEPTLQIGYQPADPISVVTAGPSLNNYMQGWLP 479
            L+L +GYQ+  LQLNP+ ED    YG    Q Q ++   FF  LECEP LQ+GYQ       + AGPS NNYM GWLP
Sbjct:  173 LRLADGYQM-PLQLNPNQEDHHVDYGRHDQQQQQNSHHAFFQPLECEPILQMGYQGQQDHG-MEAGPSENNYMLGWLP 248          
BLAST of CN186544 vs. ExPASy Swiss-Prot
Match: AGL9_ARADE (Agamous-like MADS-box protein AGL9 homolog OS=Aranda deborah PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 5.766e-40
Identity = 64/81 (79.01%), Postives = 71/81 (87.65%), Query Frame = -1
Query:  515 SSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLNK 757
            SSQQEYLKLK R EALQRSQRNLLGE+LGPL SKELE LERQLD SL+QIRSTRTQ+MLD L +LQ +EQ+L EANKTL +
Sbjct:   89 SSQQEYLKLKNRVEALQRSQRNLLGEDLGPLGSKELEQLERQLDSSLRQIRSTRTQFMLDQLADLQRREQMLCEANKTLKR 169          

HSP 2 Score: 60.4622 bits (145), Expect = 5.766e-40
Identity = 35/71 (49.30%), Postives = 44/71 (61.97%), Query Frame = -3
Query:  264 EGYQVNTLQL-NPS-AEDCGYGLKPAQPQGDTFFHALECEPTLQIGYQPADPISVVTAGPSLNNYM-QGWL 467
            E  Q N  Q+ +PS     GYG +PAQ  G+ F+H LECEPTLQIGY     ++  TA  ++NNYM  GWL
Sbjct:  173 ESSQANQQQVWDPSNTHAVGYGRQPAQHHGEAFYHPLECEPTLQIGYHSDITMATATAS-TVNNYMPPGWL 242          
BLAST of CN186544 vs. ExPASy Swiss-Prot
Match: AGL9_SOLLC (Agamous-like MADS-box protein AGL9 homolog OS=Solanum lycopersicum GN=TDR5 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 9.511e-38
Identity = 93/145 (64.14%), Postives = 103/145 (71.03%), Query Frame = -1
Query:  338 EALELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLNKGR*R*GTPILLVCS*WRDTK*THFN*ILVQKIVVMGLNQLNLRAIPSFTPWNVNPHCKL 772
            EALE+SSQQEYLKLK RYEALQRSQRNLLGE+LGPLNSKELESLERQLDMSLKQIRSTRTQ MLD LT+ Q KE  L+EAN+TL K R   G+ + L CS              + K+  M   QL LRA+ SF  W VN  CKL
Sbjct:   86 EALEISSQQEYLKLKGRYEALQRSQRNLLGEDLGPLNSKELESLERQLDMSLKQIRSTRTQLMLDQLTDYQRKEHALNEANRTL-KQRLMEGSQLNLQCS-------------QMHKLWAMAGKQLKLRAMASFILWIVNLLCKL 216          
BLAST of CN186544 vs. ExPASy Swiss-Prot
Match: SEP2_ARATH (Developmental protein SEPALLATA 2 OS=Arabidopsis thaliana GN=SEP2 PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 7.284e-30
Identity = 56/80 (70.00%), Postives = 67/80 (83.75%), Query Frame = -1
Query:  518 SSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLN 757
            +S +EYLKLK RYE LQR QRNLLGE+LGPLNSKELE LERQLD SLKQ+R  +TQYMLD L++LQ KE +L +AN+ L+
Sbjct:   90 NSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRCIKTQYMLDQLSDLQGKEHILLDANRALS 169          

HSP 2 Score: 39.2762 bits (90), Expect = 7.284e-30
Identity = 22/59 (37.29%), Postives = 33/59 (55.93%), Query Frame = -3
Query:  264 EDCGYGLKPAQPQGDTFFHALECEPTLQIGYQP---ADPISVVTAGPSL--NNYMQGWL 425
            ++  YG   A  QG   + +LEC+PTLQIGY     ++ ++V   G S   N Y+ GW+
Sbjct:  193 QNIAYGHPQAHSQG--LYQSLECDPTLQIGYSHPVCSEQMAVTVQGQSQQGNGYIPGWM 249          
BLAST of CN186544 vs. ExPASy Swiss-Prot
Match: MTF1_PEA (MADS-box transcription factor 1 OS=Pisum sativum GN=MTF1 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 9.533e-30
Identity = 66/84 (78.57%), Postives = 76/84 (90.48%), Query Frame = -1
Query:  515 LELSSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLNK 766
            LELSSQQEYLKLKARYE+LQRSQRNL+GE+LGPL+SK+LE+LERQLD SLKQIRSTRTQ+MLD L +LQ KE LL EAN+ L +
Sbjct:   90 LELSSQQEYLKLKARYESLQRSQRNLMGEDLGPLSSKDLETLERQLDSSLKQIRSTRTQFMLDQLGDLQRKEHLLCEANRALRQ 173          

HSP 2 Score: 99.3673 bits (246), Expect = 2.364e-20
Identity = 54/92 (58.70%), Postives = 61/92 (66.30%), Query Frame = -3
Query:  261 DPQQRTMTLRHADFAGLQLMEGYQVNTLQLNPSAEDCGYGLK-PAQPQGDTFFHA--LECEPTLQIGYQPADPISVVTAGPSLNNYMQGWLP 527
            D Q++   L  A+ A  Q MEGYQ+N+LQLN SAED GYG        GD  F    +ECEPTLQIGY   DP SVVTAGPS+NNYM GWLP
Sbjct:  156 DLQRKEHLLCEANRALRQRMEGYQINSLQLNLSAEDMGYGRHHQGHTHGDELFQVQPIECEPTLQIGYHQGDPGSVVTAGPSMNNYMGGWLP 247          
BLAST of CN186544 vs. ExPASy Swiss-Prot
Match: SEP1_ARATH (Developmental protein SEPALLATA 1 OS=Arabidopsis thaliana GN=SEP1 PE=1 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 2.094e-29
Identity = 58/79 (73.42%), Postives = 68/79 (86.08%), Query Frame = -1
Query:  521 SSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTL 757
            +S +EYLKLK RYE LQR QRNLLGE+LGPLNSKELE LERQLD SLKQ+RS +TQYMLD L++LQ+KEQ+L E N+ L
Sbjct:   90 NSYREYLKLKGRYENLQRQQRNLLGEDLGPLNSKELEQLERQLDGSLKQVRSIKTQYMLDQLSDLQNKEQMLLETNRAL 168          

HSP 2 Score: 33.4982 bits (75), Expect = 2.094e-29
Identity = 20/55 (36.36%), Postives = 28/55 (50.91%), Query Frame = -3
Query:  264 YGLKPAQPQGDTFFHALECEPTLQIGYQP---ADPISVVTAGPSL--NNYMQGWL 413
            Y    AQ QG   +  LEC PTLQ+GY     ++ I+  T   +   N Y+ GW+
Sbjct:  198 YAHHQAQSQG--LYQPLECNPTLQMGYDNPVCSEQITATTQAQAQQGNGYIPGWM 250          
BLAST of CN186544 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSJ (MADS-box transcription factor 7 OS=Oryza sativa subsp. japonica GN=MADS7 PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 8.421e-28
Identity = 53/81 (65.43%), Postives = 68/81 (83.95%), Query Frame = -1
Query:  515 SSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLNK 757
            +S+ EYLKLKAR E LQR+QRNLLGE+L  L  KELESLE+QLD SLK +R+TRT++++D LTELQ KEQ++SEAN+ L +
Sbjct:   92 ASRNEYLKLKARVENLQRTQRNLLGEDLDSLGIKELESLEKQLDSSLKHVRTTRTKHLVDQLTELQRKEQMVSEANRCLRR 172          

HSP 2 Score: 38.1206 bits (87), Expect = 8.421e-28
Identity = 25/58 (43.10%), Postives = 32/58 (55.17%), Query Frame = -3
Query:  261 GYGLKPAQPQ----GDTFFHALEC--EPTLQIGYQPADPISVVTAGPSLNNYMQGWLP 416
            GY  +P   Q    G+ FFH L+   EPTLQIGY PA+    + +   +N YM  WLP
Sbjct:  194 GYERQPEVQQPLHGGNGFFHPLDAAGEPTLQIGY-PAEHHEAMNSA-CMNTYMPPWLP 249          
BLAST of CN186544 vs. ExPASy Swiss-Prot
Match: MADS7_ORYSI (MADS-box transcription factor 7 OS=Oryza sativa subsp. indica GN=MADS7 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 8.421e-28
Identity = 53/81 (65.43%), Postives = 68/81 (83.95%), Query Frame = -1
Query:  515 SSQQEYLKLKARYEALQRSQRNLLGEELGPLNSKELESLERQLDMSLKQIRSTRTQYMLDTLTELQHKEQLLSEANKTLNK 757
            +S+ EYLKLKAR E LQR+QRNLLGE+L  L  KELESLE+QLD SLK +R+TRT++++D LTELQ KEQ++SEAN+ L +
Sbjct:   92 ASRNEYLKLKARVENLQRTQRNLLGEDLDSLGIKELESLEKQLDSSLKHVRTTRTKHLVDQLTELQRKEQMVSEANRCLRR 172          

HSP 2 Score: 38.1206 bits (87), Expect = 8.421e-28
Identity = 25/58 (43.10%), Postives = 32/58 (55.17%), Query Frame = -3
Query:  261 GYGLKPAQPQ----GDTFFHALEC--EPTLQIGYQPADPISVVTAGPSLNNYMQGWLP 416
            GY  +P   Q    G+ FFH L+   EPTLQIGY PA+    + +   +N YM  WLP
Sbjct:  194 GYERQPEVQQPLHGGNGFFHPLDAAGEPTLQIGY-PAEHHEAMNSA-CMNTYMPPWLP 249          
The following BLAST results are available for this feature:
BLAST of CN186544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
AGL9_PETHY3.128e-5484.88Agamous-like MADS-box protein AGL9 homolog OS=Petu... [more]
SEP3_ARATH1.707e-4277.11Developmental protein SEPALLATA 3 OS=Arabidopsis t... [more]
AGL9_SINAL1.418e-4175.90Agamous-like MADS-box protein AGL9 homolog OS=Sina... [more]
AGL9_ARADE5.766e-4079.01Agamous-like MADS-box protein AGL9 homolog OS=Aran... [more]
AGL9_SOLLC9.511e-3864.14Agamous-like MADS-box protein AGL9 homolog OS=Sola... [more]
SEP2_ARATH7.284e-3070.00Developmental protein SEPALLATA 2 OS=Arabidopsis t... [more]
MTF1_PEA9.533e-3078.57MADS-box transcription factor 1 OS=Pisum sativum G... [more]
SEP1_ARATH2.094e-2973.42Developmental protein SEPALLATA 1 OS=Arabidopsis t... [more]
MADS7_ORYSJ8.421e-2865.43MADS-box transcription factor 7 OS=Oryza sativa su... [more]
MADS7_ORYSI8.421e-2865.43MADS-box transcription factor 7 OS=Oryza sativa su... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003B06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186544 ID=CN186544; Name=CN186544; organism=Citrus sinensis; type=EST; length=772bp
TTTTTTTTTTTTTTTTTCAACAAGGCGTTTGTTAAATAAAGACCTTTGAG
GTGATTGAAAATACACGCACACACAACATAGCTCCCTTTCGTCATCAGTT
TCCCTAAAGTGCAGGATCACTGTAGAGTTATTATAATAAATCCTTATGAT
TGCGTGTTCCTAGTCACTGAATAGGGTTGCTTACAAAGGGATACAAAGTT
GCTGATTCTTATGGATCAACTGCAATACATTGACTGGTAATGCCCGCCGC
TCTCTTAGCATGGTAGCCATCCTTGCATGTAATTATTCAGACTCGGGCCT
GCTGTGACAACCGATATTGGGTCCGCAGGCTGGTATCCAATTTGCAATGT
GGGTTCACATTCCAAGGCGTGAAAGAAGGTATCGCCCTGAGGTTGAGCTG
GTTTAAGCCCATAACCACAATCTTCTGCACTAGGATTCAATTGAAGTGTG
TTCACTTGGTATCCCTCCATCAACTGCAAACCAGCAAAATCGGCGTGCCT
TAGCGTCATCGTCCTTTGTTGAGGGTCTTATTTGCTTCGCTCAGCAACTG
TTCCTTATGTTGCAGTTCAGTAAGGGTATCCAGCATGTACTGAGTTCTTG
TTGATCTGATCTGCTTCAATGACATATCAAGCTGCCTTTCAAGTGACTCA
AGCTCTTTGCTGTTTAGAGGGCCAAGTTCTTCTCCAAGGAGATTCCTTTG
GGATCTCTGTAGGGCTTCATATCGTGCTTTAAGCTTCAGATATTCTTGCT
GGCTACTTAACTCCAGGGCCTC
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