CN186538

Overview
NameCN186538
Unique NameCN186538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2881 contig Csv1_Contig2881:1..737. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN186538 vs. ExPASy Swiss-Prot
Match: FBL5_ARATH (F-box/LRR-repeat protein 5 OS=Arabidopsis thaliana GN=FBL5 PE=2 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 2.078e-71
Identity = 125/160 (78.12%), Postives = 141/160 (88.12%), Query Frame = -3 
Query:  259 LNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESM-KGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHCVCAGQSHRTASFIPHPAH 735
            LNLGWCE++ D GVM+LAYGCPDLR+LDLC CV ITD+SV+ALAN C HLRSLGLYYCRNITDRA+YSLAQSGVKNK  +W ++ KG++DEEGL+SLNISQCT LTP AVQA+CDTFPALHTCSGRHSLVMSGCLNL SVHC C  Q+HRT +  PHPAH
Sbjct:  201 LNLGWCENISDDGVMSLAYGCPDLRTLDLCSCVLITDESVVALANRCIHLRSLGLYYCRNITDRAMYSLAQSGVKNKHEMWRAVKKGKFDEEGLRSLNISQCTYLTPSAVQAVCDTFPALHTCSGRHSLVMSGCLNLQSVHCACILQAHRTHTVYPHPAH 360
The following BLAST results are available for this feature:
BLAST of CN186538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FBL5_ARATH2.078e-7178.13F-box/LRR-repeat protein 5 OS=Arabidopsis thaliana... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0003B02_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186538 ID=CN186538; Name=CN186538; organism=Citrus sinensis; type=EST; length=737bp
CTTTTTTTTTTTTTATTTTTTTATTTTAATTTTTTTTTATTATATGGCCC
TTTTGAACAAAGGCCTATATTTCTCTAATGTTGTCCATACCCTTCCAAAA
CATAGCCCTGACGTTACAAAAAAAAATAAAATGAAATAAACAAGACTGCT
AGAAGCAGCCTAACAGTCTCTTTAACTTTTAACACAACCATATGTACAGT
CAAGAACGCTCATATCTCTGGGCTCTCAAACAAACCAGCTTGAAGTCTGC
ATTGTTCAATGAGCTGGGTGAGGAATAAAGCTAGCTGTGCGGTGTGATTG
GCCGGCACAAACACAATGCACGGACGTCAAGTTCAAGCATCCACTCATGA
CGAGGGAATGCCTACCAGAGCAGGTGTGAAGTGCGGGAAATGTATCACAA
AGTGCCTGGACAGCTGGAGGGGTGAGAGCTGTACACTGGCTGATATTAAG
ACTCTGAAGCCCTTCCTCATCATACCTACCTTTCATAGATTCCCAAATTC
CAGGTTTGTTCTTCACTCCGCTTTGGGCAAGTGAATATATTGCTCGGTCT
GTGATGTTGCGACAATAGTACAGACCAAGGGATCTCAAATGGGGACACCC
ATTTGCCAAAGCAATCACACTATCATCTGTTATACATACACAGCCACACA
AGTCCAGGGATCTGAGATCAGGGCATCCATATGCTAAATTCATGACTCCT
ACATCACCAACATCCTCACACCATCCCAGATTTAAAG
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