CN186537

Overview
NameCN186537
Unique NameCN186537
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12266 contig Csv1_Contig12266:239..947. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186537 vs. ExPASy Swiss-Prot
Match: PRP8_MOUSE (Pre-mRNA-processing-splicing factor 8 OS=Mus musculus GN=Prpf8 PE=1 SV=2)

HSP 1 Score: 317.775 bits (813), Expect = 3.678e-86
Identity = 138/198 (69.70%), Postives = 167/198 (84.34%), Query Frame = 2
Query:    8 QVKEIRCIAMPLQWGTHQQVHLPSALPEHDFLNDLEPLGWMHTQPNELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPHGYLPTHYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTVSMKYGVKLGTPREYYHEDHRPTHFLEFSNLEEGEMAEGDREDTFS 601
            QVKEIRCI M  QWGTHQ VHLPS LP+H++L ++EPLGW+HTQPNE PQLSPQD+T+HA+I+ +N  WDGEK II+TCSFTPGSC+LTAYKLTPSGYEWGR N D G+NP GYLP+HYE+VQMLLSDRFLGF+MVP    WNYNFMGV+H  +MKY ++L  P+E+YHE HRP+HFL F+ L+EGE+   DRED ++
Sbjct: 2138 QVKEIRCIVMVPQWGTHQTVHLPSQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKIMADNPSWDGEKTIIITCSFTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWNYNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA 2335          
BLAST of CN186537 vs. ExPASy Swiss-Prot
Match: PRP8_HUMAN (Pre-mRNA-processing-splicing factor 8 OS=Homo sapiens GN=PRPF8 PE=1 SV=2)

HSP 1 Score: 316.235 bits (809), Expect = 1.070e-85
Identity = 137/198 (69.19%), Postives = 166/198 (83.84%), Query Frame = 2
Query:    8 QVKEIRCIAMPLQWGTHQQVHLPSALPEHDFLNDLEPLGWMHTQPNELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPHGYLPTHYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTVSMKYGVKLGTPREYYHEDHRPTHFLEFSNLEEGEMAEGDREDTFS 601
            QVKEIRCI M  QWGTHQ VHLP  LP+H++L ++EPLGW+HTQPNE PQLSPQD+T+HA+I+ +N  WDGEK II+TCSFTPGSC+LTAYKLTPSGYEWGR N D G+NP GYLP+HYE+VQMLLSDRFLGF+MVP    WNYNFMGV+H  +MKY ++L  P+E+YHE HRP+HFL F+ L+EGE+   DRED ++
Sbjct: 2138 QVKEIRCIVMVPQWGTHQTVHLPGQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKIMADNPSWDGEKTIIITCSFTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPAQSSWNYNFMGVRHDPNMKYELQLANPKEFYHEVHRPSHFLNFALLQEGEVYSADREDLYA 2335          
BLAST of CN186537 vs. ExPASy Swiss-Prot
Match: PRP8_CAEEL (Pre-mRNA-splicing factor 8 homolog OS=Caenorhabditis elegans GN=prp-8 PE=1 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 5.687e-79
Identity = 131/199 (65.83%), Postives = 158/199 (79.40%), Query Frame = 2
Query:    8 QVKEIRCIAMPLQWGTHQQVHLPSALPEHDFLNDLEPLGWMHTQPNELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPHGYLPTHYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTVSMKYGVKLGTPREYYHEDHRPTHFLEFSNLEEG-EMAEGDREDTFS 601
            QVKEIRCI +  Q G+HQQV+LP+ LP+H+ L D EPLGWMHTQPNELPQLSPQD+T+HA++L +N  WDGEK +++TCSFTPGS SLTAYKLTPSGYEWG+ N D G+NP GY+PTHYEKVQMLLSDRFLG++MVP NG WNYNF G + + +MK+ V L  P+EYYHEDHRP HF  F   ++       DRED F+
Sbjct: 2131 QVKEIRCIVLVPQTGSHQQVNLPTQLPDHELLRDFEPLGWMHTQPNELPQLSPQDVTTHAKLLTDNISWDGEKTVMITCSFTPGSVSLTAYKLTPSGYEWGKANTDKGNNPKGYMPTHYEKVQMLLSDRFLGYFMVPSNGVWNYNFQGQRWSPAMKFDVCLSNPKEYYHEDHRPVHFHNFKAFDDPLGTGSADREDAFA 2329          
BLAST of CN186537 vs. ExPASy Swiss-Prot
Match: PRP8_DICDI (Pre-mRNA-processing-splicing factor 8 homolog OS=Dictyostelium discoideum GN=prpf8 PE=3 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 6.522e-67
Identity = 115/182 (63.19%), Postives = 141/182 (77.47%), Query Frame = 2
Query:   11 VKEIRCIAMPLQWGTHQQVHLPSALPEHDFLNDLEPLGWMHTQPNELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPHGYLPTHYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTVSMKYGVKLGTPREYYHEDHRPTHFLEFSNL 556
            VKEIRCI MP QWGT   V +P+ LPEH++L DLEPLGW+HTQP ELPQLSPQD+ +H++I+ +NK WDGEK +I++ S     C+LTAY LTPSG+EWG+ NKD+  N  GY P  YEKVQMLLSDRFLGFYMVPD G WNYNFMGVKH+ +M YG+KL  P+ +Y E HRP HF  ++ +
Sbjct: 2129 VKEIRCIVMPPQWGTPVHVTVPNQLPEHEYLKDLEPLGWIHTQPTELPQLSPQDVITHSKIMSDNKSWDGEKTVIISVS-VAWPCTLTAYHLTPSGFEWGKNNKDS-LNYQGYQPQFYEKVQMLLSDRFLGFYMVPDRGSWNYNFMGVKHSTNMTYGLKLDYPKNFYDESHRPAHFQNWTQM 2308          
BLAST of CN186537 vs. ExPASy Swiss-Prot
Match: SPP42_SCHPO (Pre-mRNA-splicing factor spp42 OS=Schizosaccharomyces pombe GN=spp42 PE=1 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.366e-48
Identity = 98/203 (48.28%), Postives = 130/203 (64.04%), Query Frame = 2
Query:    8 QVKEIRCIAMPLQWGTHQQVHLPSALPEHDF----LNDLEPLGWMHTQPNELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPH-GYLPTHYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTVSMKYGVKLGTPREYYHEDHRPTHFLEFSNLEEGEMAEGDREDTFS 601
            Q+KEIRCIA+  Q G+ + V LPS LP HD     L DLEPLGW+HTQ +ELP LS  D+T+HA+IL ++ +WD  K + LT S+ PGS SL AY ++  G EWG  N D  S+   GY P+  EK Q+LLSDR  GF++VP+ G WNYNF G   +  M Y +KL  P  ++  +HRPTH + ++ LE  +  E D  D F+
Sbjct: 2163 QIKEIRCIALVPQLGSIRNVQLPSKLP-HDLQPSILEDLEPLGWIHTQSSELPYLSSVDVTTHAKILSSHPEWD-TKAVTLTVSYIPGSISLAAYTVSKEGIEWGSKNMDINSDEAIGYEPSMAEKCQLLLSDRIQGFFLVPEEGVWNYNFNGASFSPKMTYSLKLDVPLPFFALEHRPTHVISYTELETNDRLEEDMPDAFA 2363          
BLAST of CN186537 vs. ExPASy Swiss-Prot
Match: PRP8_YEAST (Pre-mRNA-splicing factor 8 OS=Saccharomyces cerevisiae GN=PRP8 PE=1 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.506e-34
Identity = 80/202 (39.60%), Postives = 113/202 (55.94%), Query Frame = 2
Query:    8 QVKEIRCIAMPLQWGTHQQVHLPSALPEHDFLND---LEPLGWMHTQPNELPQLSPQDLTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSN-PHGYLPTHYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTVSMKYGVKLGTPREYYHEDHRPTHFLEFSNLEEGEMAEGDREDTFS 601
            +VKEI+ + +  Q G    V + S +P+   L D   LE LGW+HTQ  EL  ++  ++ +H+++  + K+     CI ++   TPGS SL+AY LT  GY+WG  NKD  +    G+ PT     Q+LLSDR  G +++P    WNY FMG        Y  K G P E+Y+E HRP HFL+FS L   E  E ++ D FS
Sbjct: 2217 KVKEIKTVVLVPQLGHVGSVQI-SNIPDIGDLPDTEGLELLGWIHTQTEELKFMAASEVATHSKLFADKKR----DCIDISIFSTPGSVSLSAYNLTDEGYQWGEENKDIMNVLSEGFEPTFSTHAQLLLSDRITGNFIIPSGNVWNYTFMGTAFNQEGDYNFKYGIPLEFYNEMHRPVHFLQFSELAGDEELEAEQIDVFS 2413          
The following BLAST results are available for this feature:
BLAST of CN186537 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PRP8_MOUSE3.678e-8669.70Pre-mRNA-processing-splicing factor 8 OS=Mus muscu... [more]
PRP8_HUMAN1.070e-8569.19Pre-mRNA-processing-splicing factor 8 OS=Homo sapi... [more]
PRP8_CAEEL5.687e-7965.83Pre-mRNA-splicing factor 8 homolog OS=Caenorhabdit... [more]
PRP8_DICDI6.522e-6763.19Pre-mRNA-processing-splicing factor 8 homolog OS=D... [more]
SPP42_SCHPO1.366e-4848.28Pre-mRNA-splicing factor spp42 OS=Schizosaccharomy... [more]
PRP8_YEAST9.506e-3439.60Pre-mRNA-splicing factor 8 OS=Saccharomyces cerevi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0003A24_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003A24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186537 ID=CN186537; Name=CN186537; organism=Citrus sinensis; type=EST; length=709bp
ATTACAGCAGGTCAAGGAAATTCGTTGTATTGCCATGCCCCTTCAATGGG
GCACTCATCAGCAAGTTCATCTTCCTTCGGCACTCCCTGAGCATGATTTC
CTGAATGATCTGGAGCCTTTGGGATGGATGCACACTCAACCAAATGAGCT
TCCACAGCTATCGCCTCAGGATCTCACTTCTCATGCGCGGATTCTAGAAA
ACAATAAGCAATGGGATGGAGAGAAATGCATTATCTTGACTTGTAGTTTC
ACCCCAGGTTCCTGCTCGTTAACTGCATACAAGCTTACTCCAAGTGGTTA
TGAGTGGGGAAGAGTTAACAAGGACACAGGAAGCAATCCCCATGGATATC
TTCCAACTCACTACGAGAAGGTCCAAATGCTTCTGAGTGACCGGTTCCTT
GGTTTCTACATGGTTCCCGACAACGGTCCATGGAACTATAACTTCATGGG
AGTGAAGCATACAGTGAGCATGAAATATGGTGTCAAGCTTGGGACTCCTC
GAGAATACTACCATGAGGACCATAGGCCAACTCATTTCTTGGAGTTCAGC
AACTTGGAGGAGGGCGAAATGGCAGAGGGAGATCGTGAGGATACATTCTC
ATAAGCCTATTGATGCTATTTTGAGGTCGTAATCTTTCTTGTGAATTAAA
TTGTAGCATTTGCTTGGAAGCTGCTAGACTGGAGTAGATTTACTTTACCA
ACATGGGGA
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