CN186532

Overview
NameCN186532
Unique NameCN186532
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12524 contig Csv1_Contig12524:517..1279. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186532 vs. ExPASy Swiss-Prot
Match: PGIP_PYRCO (Polygalacturonase inhibitor OS=Pyrus communis GN=PGIP PE=1 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 2.880e-71
Identity = 133/172 (77.33%), Postives = 143/172 (83.14%), Query Frame = -3
Query:  246 PSSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSTPDLYLSHNQLSGKIPASLGSMDFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPESLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPVGGKLQSFGYTEYFHNRCLCGAPLESCK 761
            PSSLS+L  LGAL LDRNKLTG IP SFG F G+ PDLYLSHNQLSG IP S   MDF +IDLSRNKLEGDAS +FGLNKTTQ +D+SRNLLEFNLSKVEFP SLT+LD+NHNKI+GSIP + T L N  FLNVSYNRLCG IPVGGKLQSF    YFHNRCLCGAPL SCK
Sbjct:  160 PSSLSELPNLGALRLDRNKLTGHIPISFGQFIGNVPDLYLSHNQLSGNIPTSFAQMDFTSIDLSRNKLEGDASVIFGLNKTTQIVDLSRNLLEFNLSKVEFPTSLTSLDINHNKIYGSIPVEFTQL-NFQFLNVSYNRLCGQIPVGGKLQSFDEYSYFHNRCLCGAPLPSCK 330          
BLAST of CN186532 vs. ExPASy Swiss-Prot
Match: PGIP_VITVI (Polygalacturonase inhibitor OS=Vitis vinifera GN=pgip PE=1 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 6.213e-66
Identity = 124/172 (72.09%), Postives = 139/172 (80.81%), Query Frame = -3
Query:  246 PSSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSTPDLYLSHNQLSGKIPASLGSMDFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPESLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPVGGKLQSFGYTEYFHNRCLCGAPLESCK 761
            P SLS L  LGALHLDRN LTG IP+SFG F GSTP L+LSHNQLSGKIP S    D N +DLSRNKLEGD S  F  NK+TQ +D SRNL +F+LS+VEFP+SLT+LDL+HNKI GS+P  +TSL+ L FLNVSYNRLCG IPVGGKLQSF Y  YFHNRCLCGAPL+SCK
Sbjct:  163 PGSLSLLPNLGALHLDRNHLTGPIPDSFGKFAGSTPGLHLSHNQLSGKIPYSFRGFDPNVMDLSRNKLEGDLSIFFNANKSTQIVDFSRNLFQFDLSRVEFPKSLTSLDLSHNKIAGSLPEMMTSLD-LQFLNVSYNRLCGKIPVGGKLQSFDYDSYFHNRCLCGAPLQSCK 333          
BLAST of CN186532 vs. ExPASy Swiss-Prot
Match: PGIP1_ARATH (Polygalacturonase inhibitor 1 OS=Arabidopsis thaliana GN=PGIP1 PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.701e-61
Identity = 118/172 (68.60%), Postives = 136/172 (79.07%), Query Frame = -3
Query:  246 PSSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSTPDLYLSHNQLSGKIPASLGSMDFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPESLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPVGGKLQSFGYTEYFHNRCLCGAPLESCK 761
            PSSLS L K+ AL L RNKLTGSIPESFG+F G+ PDL LSHNQLSG IP SLG++DFN IDLSRNKL+GDAS LFG NKTT  ID+SRN+ +F++SKV+ P++L  LDLNHN I G+IP Q T    L F NVSYN+LCG IP GGKLQ+F    YFHN+CLCGAPLE CK
Sbjct:  160 PSSLSTLPKILALELSRNKLTGSIPESFGSFPGTVPDLRLSHNQLSGPIPKSLGNIDFNRIDLSRNKLQGDASMLFGSNKTTWSIDLSRNMFQFDISKVDIPKTLGILDLNHNGITGNIPVQWTEAP-LQFFNVSYNKLCGHIPTGGKLQTFDSYSYFHNKCLCGAPLEICK 330          
BLAST of CN186532 vs. ExPASy Swiss-Prot
Match: PGIP2_ARATH (Polygalacturonase inhibitor 2 OS=Arabidopsis thaliana GN=PGIP2 PE=2 SV=2)

HSP 1 Score: 219.164 bits (557), Expect = 2.003e-56
Identity = 111/172 (64.53%), Postives = 129/172 (75.00%), Query Frame = -3
Query:  246 PSSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSTPDLYLSHNQLSGKIPASLGSMDFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPESLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPVGGKLQSFGYTEYFHNRCLCGAPLESCK 761
            PSSLS L+KL  L L RNKLTG IPESFGTF+G  P L+LSHNQLSG IP SLG+ DF  IDLSRNKL+GDAS LFG  KTT  +D+SRN+ +F+LSKV+  ++L NLD+NHN I GSIPA+  S      LNVSYNRLCG IP G  +Q F    +FHN+CLCGAPL SCK
Sbjct:  160 PSSLSSLRKLEYLELSRNKLTGPIPESFGTFSGKVPSLFLSHNQLSGTIPKSLGNPDFYRIDLSRNKLQGDASILFGAKKTTWIVDISRNMFQFDLSKVKLAKTLNNLDMNHNGITGSIPAE-WSKAYFQLLNVSYNRLCGRIPKGEYIQRFDSYSFFHNKCLCGAPLPSCK 330          
BLAST of CN186532 vs. ExPASy Swiss-Prot
Match: PGIP1_PHAVU (Polygalacturonase inhibitor 1 OS=Phaseolus vulgaris GN=PGIP1 PE=1 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.394e-41
Identity = 79/171 (46.20%), Postives = 120/171 (70.18%), Query Frame = -3
Query:  249 PSSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSTPDLYLSHNQLSGKIPASLGSMDFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPESLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPVGGKLQSFGYTEYFHNRCLCGAPLESC 761
            P S+S L  LG +  D N+++G+IP+S+G+F+     + +S N+L+GKIP +  +++   +DLSRN LEGDAS LFG +K T++I +++N L F+L KV   ++L  LDL +N+I+G++P  +T L+ L  LNVS+N LCG IP GG L+ F  + Y +N+CLCG+PL SC
Sbjct:  171 PPSISSLPNLGGITFDGNRISGAIPDSYGSFSKLFTAMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTKKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLQSLNVSFNNLCGEIPQGGNLKRFDVSSYANNKCLCGSPLPSC 341          
BLAST of CN186532 vs. ExPASy Swiss-Prot
Match: PGIP3_PHAVU (Polygalacturonase inhibitor 3 OS=Phaseolus vulgaris GN=PGIP3 PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.105e-41
Identity = 78/171 (45.61%), Postives = 120/171 (70.18%), Query Frame = -3
Query:  249 PSSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSTPDLYLSHNQLSGKIPASLGSMDFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPESLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPVGGKLQSFGYTEYFHNRCLCGAPLESC 761
            P S+S L  L  +  D N+++G+IP+S+G+F+     + +S N+L+GKIP +  +++   +DLSRN L+GDAS LFG +K TQ+I +++N L+F+L KV   ++L  LDL +N+I+G++P  +T L+ L  LNVS+N LCG IP GG LQ F  + Y +N+CLCG+PL +C
Sbjct:  171 PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLQGDASVLFGSDKNTQKIHLAKNSLDFDLEKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPAC 341          
BLAST of CN186532 vs. ExPASy Swiss-Prot
Match: PGIP2_PHAVU (Polygalacturonase inhibitor 2 OS=Phaseolus vulgaris GN=PGIP2 PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.105e-41
Identity = 79/171 (46.20%), Postives = 119/171 (69.59%), Query Frame = -3
Query:  249 PSSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSTPDLYLSHNQLSGKIPASLGSMDFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPESLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPVGGKLQSFGYTEYFHNRCLCGAPLESC 761
            P S+S L  L  +  D N+++G+IP+S+G+F+     + +S N+L+GKIP +  +++   +DLSRN LEGDAS LFG +K TQ+I +++N L F+L KV   ++L  LDL +N+I+G++P  +T L+ L  LNVS+N LCG IP GG LQ F  + Y +N+CLCG+PL +C
Sbjct:  171 PPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPAC 341          
BLAST of CN186532 vs. ExPASy Swiss-Prot
Match: PGIP1_ORYSJ (Polygalacturonase inhibitor 1 OS=Oryza sativa subsp. japonica GN=FOR1 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 8.751e-36
Identity = 81/171 (47.37%), Postives = 106/171 (61.99%), Query Frame = -3
Query:  249 PSSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSTPDLYLSHNQLSGKIPASLGSMDFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPESLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPVGGKLQSFGYTEYFHNRCLCGAPLESC 761
            P+S S L  L +L L  NKLTG IP   G   G    L LS+NQL+G IP      + NT+DLS N+L GDASFLF   +   ++D+S N L+F+LSK+ FP  LT LDL+HN+I G++P  + +L  L  L++SYNRLCGP+P    +   G   Y HN+C  GAPL  C
Sbjct:  161 PNSFSDLPNLRSLDLRSNKLTGCIPA--GLVQGQFRSLILSYNQLTGPIPRDDAQDEINTVDLSHNRLTGDASFLFAAGRPIGKVDLSWNDLDFDLSKLVFPPELTYLDLSHNRIRGTVPRSLAALSTLQTLDLSYNRLCGPLPRLHGVIRHGCKPYEHNQCAGGAPLGGC 329          
BLAST of CN186532 vs. ExPASy Swiss-Prot
Match: DR100_ARATH (DNA-damage-repair/toleration protein DRT100 OS=Arabidopsis thaliana GN=DRT100 PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.569e-21
Identity = 63/170 (37.06%), Postives = 91/170 (53.53%), Query Frame = -3
Query:  258 PSSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSTPDLYLSHNQLSGKIPASLGSMD-FNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNLSKVEFPES-LTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPVGGKLQSFGYTEYFHNRCLCGAPL 761
            P+    L+ L  + L RN+LTGSIPES         DL LS N + G IP  +G+M   + ++L  N L G        N      ++SRN LE  +  V   ++ L +LDL+HN + G IP  ++S + +G L++S+N+LCG IP G        T +  N+CLCG PL
Sbjct:  200 PADFGSLKMLSRVLLGRNELTGSIPESISGME-RLADLDLSKNHIEGPIPEWMGNMKVLSLLNLDCNSLTGPIPGSLLSNSGLDVANLSRNALEGTIPDVFGSKTYLVSLDLSHNSLSGRIPDSLSSAKFVGHLDISHNKLCGRIPTGFPFDHLEATSFSDNQCLCGGPL 368          
BLAST of CN186532 vs. ExPASy Swiss-Prot
Match: GSO1_ARATH (LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.824e-18
Identity = 62/178 (34.83%), Postives = 90/178 (50.56%), Query Frame = -3
Query:  249 PSSLSKLQKLGALHLDRNKLTGSIPESFGTFTGSTPDLYLSHNQLSGKIPASLGSMD-FNTIDLSRNKLEGDASFLFG-LNKTTQRIDVSRNLLEFNL-SKVEFPESLTNLDLNHNKIFGSIPAQITSLENLGFLNVSYNRLCGPIPVGGKLQS----FGYTEYFHNRCLCGAPLESC 761
            P+ L    KL  L LD N L GSIP+  G   G+   L L  NQ SG +P ++G +     + LSRN L G+     G L      +D+S N    ++ S +     L  LDL+HN++ G +P  +  +++LG+LNVS+N L      GGKL+     +    +  N  LCG+PL  C
Sbjct:  688 PTELFNCTKLLVLSLDGNSLNGSIPQEIGNL-GALNVLNLDKNQFSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNL------GGKLKKQFSRWPADSFLGNTGLCGSPLSRC 858          

HSP 2 Score: 68.9366 bits (167), Expect = 3.349e-11
Identity = 62/231 (26.84%), Postives = 101/231 (43.72%), Query Frame = -3
Query:  222 PSSLSKLQKLGALHLDRNKLTGSIPESFGT-------------FTGSTPD----------LYLSHNQLSGKIPASLGSM-DFNTIDLSRNKLEGDASFLFGLNKTTQRIDVSRNLLEFNL-SKVEFPESLTNLDLNHNKIFGS-----------------------IPAQITSLENLGFLNVSYNRLCGPIP-VGGKLQSFGYTEYFHNRCLCGAPLE--SCK*MQ*LELH 761
            P  +S L+KL  L L  N+ +G IP+  G              F G  P           L+L  N+L G +PASLG+    N +DL+ N+L G     FG  K  +++ +  N L+ NL   +    +LT ++L+HN++ G+                       IP ++ + +NL  L +  N+L G IP   GK++     +   N      PL+   CK +  ++L+
Sbjct:  425 PKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGSSSYLSFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLN 655          
The following BLAST results are available for this feature:
BLAST of CN186532 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
PGIP_PYRCO2.880e-7177.33Polygalacturonase inhibitor OS=Pyrus communis GN=P... [more]
PGIP_VITVI6.213e-6672.09Polygalacturonase inhibitor OS=Vitis vinifera GN=p... [more]
PGIP1_ARATH2.701e-6168.60Polygalacturonase inhibitor 1 OS=Arabidopsis thali... [more]
PGIP2_ARATH2.003e-5664.53Polygalacturonase inhibitor 2 OS=Arabidopsis thali... [more]
PGIP1_PHAVU1.394e-4146.20Polygalacturonase inhibitor 1 OS=Phaseolus vulgari... [more]
PGIP3_PHAVU3.105e-4145.61Polygalacturonase inhibitor 3 OS=Phaseolus vulgari... [more]
PGIP2_PHAVU3.105e-4146.20Polygalacturonase inhibitor 2 OS=Phaseolus vulgari... [more]
PGIP1_ORYSJ8.751e-3647.37Polygalacturonase inhibitor 1 OS=Oryza sativa subs... [more]
DR100_ARATH3.569e-2137.06DNA-damage-repair/toleration protein DRT100 OS=Ara... [more]
GSO1_ARATH4.824e-1834.83LRR receptor-like serine/threonine-protein kinase ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003A22_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003A22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186532 ID=CN186532; Name=CN186532; organism=Citrus sinensis; type=EST; length=763bp
TTTTTTTTTTTTTTTTTAATTCTCGATGTGCCAGCTTCTTACCATTATGT
TTTTATTATTCGAATCATACATAGACTTCTTGTTACATTTAATAATGAAC
AATCAATAAAAGCTTCTTACCCAACCCCATGAAGCATCATCTTTGTGATA
CTTTTAAACACAGTATGCTGCTGATATTCAATTTATATATAAGCCTACAA
TACAAATACAATACACTGAAAGTGCAATTCCAGTCACTGCATTCACTTGC
AGCTTTCGAGGGGCGCGCCACACAAGCACCTATTATGAAAATACTCCGTG
TATCCAAAGCTCTGCAACTTTCCTCCCACGGGAATCGGCCCACACAACCT
GTTGTAACTGACATTCAAGAATCCTAGATTCTCTAGCGAAGTAATTTGAG
CAGGAATGCTTCCGAATATCTTGTTGTGATTCAAATCCAAATTTGTCAAG
CTCTCTGGAAACTCAACCTTGGACAGATTAAATTCTAACAAGTTTCTTGA
AACATCAATTCTCTGCGTCGTCTTGTTCAACCCGAACAAAAACGAAGCAT
CGCCTTCAAGCTTGTTCCTGGACAAGTCAATGGTGTTAAAATCCATGCTG
CCTAAAGAGGCAGGGATTTTGCCAGAGAGCTGGTTATGTGACAAGTAAAG
ATCGGGTGTACTCCCGGTGAATGTACCAAAAGACTCAGGGATTGAACCCG
TAAGCTTGTTTCTGTCCAAATGAAGAGCGCCAAGCTTCTGCAGCTTCGAA
AGTGAACTTGGGA
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