CN186527

Overview
NameCN186527
Unique NameCN186527
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3090 contig Csv1_Contig3090:19..720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186527 vs. ExPASy Swiss-Prot
Match: CCB12_ORYSJ (Cyclin-B1-2 OS=Oryza sativa subsp. japonica GN=CYCB1-2 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.877e-18
Identity = 52/115 (45.22%), Postives = 71/115 (61.74%), Query Frame = 3
Query:   81 MAAQNKISHQVGEFQNDVFRFDIH-GVKSDIVGSHPLETLCQSAKQREEEIKRRILVNTYGTAFPMKMDFDRQILSRFQRPTGAIPSSMLGLEAVTGSLEDFGFKHYLNDPRESE 422
            MA+   +  ++G   +DV RF ++  VK D+   HPL+       +   + KR      YG+AF ++ D D QILS+FQRP GA+PSSMLG EA+TGSL+DFGF+ YLN    SE
Sbjct:    1 MASGGVVKKEIGG-NHDVVRFGVNDSVKGDLAPPHPLQASVHKEAKFWADKKRFGAEAIYGSAFNIRKDLDAQILSKFQRPPGALPSSMLGYEALTGSLDDFGFEDYLNYAAASE 114          
BLAST of CN186527 vs. ExPASy Swiss-Prot
Match: POMP_DICDI (Proteasome maturation protein homolog OS=Dictyostelium discoideum GN=pomp PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.952e-11
Identity = 41/101 (40.59%), Postives = 61/101 (60.40%), Query Frame = 3
Query:  177 SHPLETLCQSAKQREEEIKRRILVNTYGTAFPMKMDFDRQILSRFQR-PTGAIPSSMLGLEAVTGSLEDFGFKHYLNDPRESESFRPADLHHGMEVRIGLS 476
            SHP+E++     + E ++K   + N +GT   M  + ++QI S+F+R PT  + SSM+GLE + G  EDF F  YL DP  SE+  P  LH  ME R+G++
Sbjct:   25 SHPVESIQLDQGKTEIKLKNFAMKNVFGTHMVMNNEIEKQIYSQFKRLPT--LQSSMVGLETILGLDEDFDFGDYLCDPATSEAPLP-QLHTSMEHRLGMT 122          
The following BLAST results are available for this feature:
BLAST of CN186527 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CCB12_ORYSJ1.877e-1845.22Cyclin-B1-2 OS=Oryza sativa subsp. japonica GN=CYC... [more]
POMP_DICDI4.952e-1140.59Proteasome maturation protein homolog OS=Dictyoste... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0003A18_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003A18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186527 ID=CN186527; Name=CN186527; organism=Citrus sinensis; type=EST; length=702bp
ATGTTCGTTCTCCATTCATAACTTGTTCAAAAAGTTTCAGCCTTAGCATT
CACTCACCCGGAAGAATCGAAGTGAAAAATATGGCGGCACAGAACAAGAT
ATCACACCAAGTCGGGGAGTTCCAAAACGATGTGTTTCGATTCGATATCC
ACGGCGTCAAGAGCGACATCGTTGGATCTCACCCTCTAGAAACCCTATGC
CAATCTGCTAAGCAGAGGGAGGAGGAGATTAAGAGAAGAATTCTTGTGAA
CACTTATGGAACGGCTTTCCCAATGAAGATGGATTTTGATAGGCAAATTC
TTTCTCGATTTCAGAGGCCTACAGGTGCAATTCCATCTTCAATGCTTGGT
TTGGAGGCTGTGACAGGAAGCTTGGAAGATTTTGGATTCAAGCACTATCT
GAATGACCCTCGTGAATCTGAATCTTTCCGACCAGCAGACCTGCATCATG
GAATGGAAGTGCGCATTGGCCTCTCCAAAGGCCCGGCTTACCCAAGCTTT
ATATGATTTACGCAGCTTTATTCAATGATTCAGTGAAGGATCTTAAGATG
TGCTTGTACCAGTTTTCAATGAAGACATTTTAATGTGTCATTAGAGACTG
AATTTATTTACATCACCTGAAAATCAAACAGCTAGCTTTTAGTACATGTG
ATCCTTTTGTTCTCCCCTGTTATCATATTTGACTATCATGGATGCTTGAA
AG
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