CN186523

Overview
NameCN186523
Unique NameCN186523
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186523_ssr181 microsatellite CN186523_ssr181:181..201. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7139 contig Csv1_Contig7139:28..778. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN186523 vs. ExPASy Swiss-Prot
Match: SCL4_ARATH (Scarecrow-like protein 4 OS=Arabidopsis thaliana GN=SCL4 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.622e-18
Identity = 62/197 (31.47%), Postives = 80/197 (40.61%), Query Frame = 1 
Query:   97 MAYMCADSGNLMAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFFGLNPYPLNPWTXXXXXXXXXXXXPNFGYGFTGPGFPDPL------DTGESGFPFPQIDHHXXXXXXXXXXXXXXXXXXXXXX----EWMESLMNTAHSTDSSNLPPACDAWQNNASDFGLYATDPFTSCPSQLGSPTSELNRVVFADS 657
            MAYMC DSGNLMA+A                                 FG+NP  LNPW              + G+G +G  FPDP       D+ + GFPFP +DHH                          EWME+L++   S       P CD W +N  D+ +Y  DPF + PS+L    S+LNRV+   S
Sbjct:    1 MAYMCTDSGNLMAIAQQVIKQKQQQEQQQQQHHQDHQ----------IFGINPLSLNPWPNT-----------SLGFGLSGSAFPDPFQVTGGGDSNDPGFPFPNLDHHHATTTGGGFRLSDFGGGTGGGEFESDEWMETLISGGDSVADG---PDCDTWHDNP-DYVIYGPDPFDTYPSRLSVQPSDLNRVIDTSS 172
The following BLAST results are available for this feature:
BLAST of CN186523 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SCL4_ARATH1.622e-1831.47Scarecrow-like protein 4 OS=Arabidopsis thaliana G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0003A15_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003A15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186523 ID=CN186523; Name=CN186523; organism=Citrus sinensis; type=EST; length=751bp
AGTGCTGAGGGGAATCCAGAATAGCCAACTTTGTGATCCCGTTGTTTCTG
GGCTTCTGGTGCTGGATTTTTCTATTTGGAGAGTTTCAGCTGGAGAATGG
CATATATGTGTGCAGACAGTGGCAATCTTATGGCAGTTGCCCAACAAGTC
ATCAAACAAAAACAAGAACAAGAAAAACAACAGCAGCAGCAGCAGCAGCA
GCAACATCAACAAAACAGCGATCAACCGCAGCAGCAATTCTTCGGCCTCA
ATCCTTACCCTTTAAACCCCTGGACAAGCAGCAGTCAGCATTCTATTTCG
GTGTCCAACTCTCCTAATTTTGGCTACGGTTTCACGGGTCCGGGCTTCCC
CGACCCGTTAGATACTGGAGAATCTGGGTTTCCGTTCCCACAAATTGATC
ATCACTCTACTTCTGGTGGGTTTAGATTCTCTGATTTCGGAGGCGGGCCC
GGGGGTGAGTTTGACTCGGACGAGTGGATGGAGAGTTTAATGAACACCGC
TCACTCAACGGATAGTTCTAATCTGCCTCCTGCTTGTGACGCGTGGCAAA
ACAATGCTTCTGATTTCGGGCTTTACGCAACCGATCCCTTCACCAGCTGT
CCGAGTCAACTCGGCTCTCCGACCTCCGAACTCAACCGCGTCGTGTTTGC
TGACTCGCAGAAGACCATTCTCCCAGCATGGCCTCCATCTCCGCCGCCGC
CTCTAGTTCCTCCAGAATCAGCGGTCAAAGAATTAGCCAAACAAGTCAGT
C
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