CN186518

Overview
NameCN186518
Unique NameCN186518
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length760
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2548 contig Csv1_Contig2548:504..1264. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186518 vs. ExPASy Swiss-Prot
Match: RING3_ARATH (E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana GN=At3g02290 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.045e-21
Identity = 47/92 (51.09%), Postives = 63/92 (68.48%), Query Frame = -3
Query:  477 VEDADCKTQASS-----LIASPRKSEVSQL-NVFAASEEEDTCPICLEEYDTENPKLITKCEHHFHLSCILEWNERSESCPICDQEMIFDHT 734
            + D D K + SS     ++ S  KS ++   N++  SE+ED CP CLEEY +ENPK++TKC HHFHLSCI EW ERSE+CP+C + M F+ T
Sbjct:  139 LSDKDSKEEYSSKSSLRILRSRSKSIMADSENMYILSEDEDVCPTCLEEYTSENPKIVTKCSHHFHLSCIYEWMERSENCPVCGKVMEFNET 230          
The following BLAST results are available for this feature:
BLAST of CN186518 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RING3_ARATH6.045e-2151.09E3 ubiquitin-protein ligase At3g02290 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0003A12_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186518 ID=CN186518; Name=CN186518; organism=Citrus sinensis; type=EST; length=760bp
TTTTTTTTTTTTTGTTTTTTTTTATAATTAAATTTAATTTTACATTAATT
TATGCAGCAAACAACGTCATTAAAAAGGGTTCAAAATACAAAAACTGTAC
AAGACATATTTTATCAACACAATACAAGGCAAAACTATGTTTTCAAATTT
TCATACTTAGCATATGGTTGTGTATGATTTTCTCAGGCAAAACAGCAGCT
ACACCACCAACAATTCAAAGGGTTCGATAAAAAGCCAGCATGCTGTATCA
AAACTTCGTCCCTTGCACTTTGGAGTGATCCATGGCAACAATAACATATC
GAAACACTGCATCCTTCAAAATAATTAGAACCTAAATCAAAATGGATCTG
TCAACACCATCTGTTTATCTTCCGTGGAACAAAACTGACATGCATCTGCA
ATCTACTAAACCAGCAAGCATTCATTTCAGATAGCAAAGAAACTCCCATC
TTTAAGTAGACTTGCTACTAATTAAAGGTATGATCAAATATCATTTCCTG
ATCACATATGGGGCAGGATTCACTTCTTTCATTCCACTCCAAAATGCAAG
ATAGGTGGAAATGATGTTCACATTTTGTGATAAGTTTTGGATTCTCTGTA
TCATACTCTTCAAGGCAAATGGGACAAGTGTCCTCCTCTTCGGATGCTGC
AAATACATTCAATTGCGAAACTTCAGACTTCCTTGGTGAAGCAATCAAAG
AACTAGCTTGAGTTTTGCAGTCTGCATCCTCAACAACTTCACACGTAGCT
AATGTTTCAA
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