CN186516

Overview
NameCN186516
Unique NameCN186516
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1556 contig Csv1_Contig1556:39..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186516 vs. ExPASy Swiss-Prot
Match: RS103_ARATH (40S ribosomal protein S10-3 OS=Arabidopsis thaliana GN=RPS10C PE=2 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 9.794e-45
Identity = 84/97 (86.60%), Postives = 91/97 (93.81%), Query Frame = 2
Query:   62 MIIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYLNLPSEIVPATLKKQAKP 352
            MII E NR+EI KYLF+EGVC+AKKD+NLAKHP IDVPNLQVIKLMQSFKSKEYVRETFAWMHYYW+LTNEGIEFLR YLNLPS++VPATLKK AKP
Sbjct:    1 MIISEANRKEICKYLFKEGVCFAKKDFNLAKHPLIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKP 97          
BLAST of CN186516 vs. ExPASy Swiss-Prot
Match: RS101_ARATH (40S ribosomal protein S10-1 OS=Arabidopsis thaliana GN=RPS10A PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.279e-44
Identity = 84/97 (86.60%), Postives = 90/97 (92.78%), Query Frame = 2
Query:   62 MIIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYLNLPSEIVPATLKKQAKP 352
            MII E NRREI KYLF+EGVC+AKKD+NL KHP IDVPNLQVIKLMQSFKSKEYVRETFAWMHYYW+LTNEGIEFLR YLNLPS++VPATLKK AKP
Sbjct:    1 MIISENNRREICKYLFKEGVCFAKKDFNLPKHPLIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKP 97          
BLAST of CN186516 vs. ExPASy Swiss-Prot
Match: RS10_ORYSJ (40S ribosomal protein S10 OS=Oryza sativa subsp. japonica GN=RPS10 PE=2 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 1.671e-44
Identity = 84/97 (86.60%), Postives = 90/97 (92.78%), Query Frame = 2
Query:   62 MIIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYLNLPSEIVPATLKKQAKP 352
            MIIP+KNR EI KYLFQEGV YAKKDYNLAKHP+IDVPNLQVIKLMQSFKSKEYVRETF+W +YYWYLTN+GIE LR YLNLPSEIVPATLKK A+P
Sbjct:    1 MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQIDVPNLQVIKLMQSFKSKEYVRETFSWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARP 97          
BLAST of CN186516 vs. ExPASy Swiss-Prot
Match: RS102_ARATH (40S ribosomal protein S10-2 OS=Arabidopsis thaliana GN=RPS10B PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.013e-41
Identity = 83/98 (84.69%), Postives = 90/98 (91.84%), Query Frame = 2
Query:   62 MIIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYLNLPSEIVPATLKKQAKP 352
            MII E NRREISKYLF+EGV +AKKD+NL +HP I+ VPNLQVIKLMQSFKSKEYVRETFAWMHYYW+LTNEGI+FLR YLNLPSEIVPATLKKQ KP
Sbjct:    1 MIISETNRREISKYLFKEGVLFAKKDFNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKP 98          
BLAST of CN186516 vs. ExPASy Swiss-Prot
Match: RS10_SPOFR (40S ribosomal protein S10 OS=Spodoptera frugiperda GN=RpS10 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.373e-30
Identity = 61/97 (62.89%), Postives = 80/97 (82.47%), Query Frame = 2
Query:   62 MIIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEID-VPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYLNLPSEIVPATLKKQAK 349
            M++P++NR  I +YLF+EGV  AKKDY+  KHP+++ +PNLQVIK MQS KS+ YV+E FAW H+YWYLTNEGIE+LR +L+LP EIVPATLK+  +
Sbjct:    1 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR 97          
BLAST of CN186516 vs. ExPASy Swiss-Prot
Match: RS10_LUMRU (40S ribosomal protein S10 OS=Lumbricus rubellus GN=RPS10 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.373e-30
Identity = 61/97 (62.89%), Postives = 77/97 (79.38%), Query Frame = 2
Query:   62 MIIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYLNLPSEIVPATLKKQAKP 352
            M++ +KNR  I +YLF+EGV  AKKD++L KH EIDVPNL VI+ MQS  S+ YV+E F W HYYWYL NEGI++LR +L+LP EIVPATLK+Q +P
Sbjct:    1 MLMSKKNRVMIYEYLFKEGVLVAKKDFHLPKHGEIDVPNLHVIRAMQSLVSRGYVKEQFCWRHYYWYLQNEGIQYLRDFLHLPPEIVPATLKRQTRP 97          
BLAST of CN186516 vs. ExPASy Swiss-Prot
Match: RS10_ICTPU (40S ribosomal protein S10 OS=Ictalurus punctatus GN=rps10 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.217e-30
Identity = 62/100 (62.00%), Postives = 80/100 (80.00%), Query Frame = 2
Query:   62 MIIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEI---DVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYLNLPSEIVPATLKKQAKP 352
            M++P+KNR  I + LF+EGV  AKKD +LAKHPE+   +VPNL V+K MQS KS  YV+E FAW H+YWYLTNEGI++LR +L+LP EIVPATL++Q +P
Sbjct:    1 MLMPKKNRIAIYELLFKEGVMVAKKDVHLAKHPELADKNVPNLHVMKAMQSLKSCGYVKEQFAWRHFYWYLTNEGIQYLRDFLHLPPEIVPATLRRQTRP 100          
BLAST of CN186516 vs. ExPASy Swiss-Prot
Match: RS10_RAT (40S ribosomal protein S10 OS=Rattus norvegicus GN=Rps10 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.285e-28
Identity = 59/96 (61.46%), Postives = 77/96 (80.21%), Query Frame = 2
Query:   62 MIIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEI---DVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYLNLPSEIVPATLKK 340
            M++P+KNR  I + LF+EGV  AKKD ++ KHPE+   +VPNL V+K MQS KS+ YV+E FAW H+YWYLTNEGI++LR YL+LP EIVPATL++
Sbjct:    1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRR 96          
BLAST of CN186516 vs. ExPASy Swiss-Prot
Match: RS10_MOUSE (40S ribosomal protein S10 OS=Mus musculus GN=Rps10 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.285e-28
Identity = 59/96 (61.46%), Postives = 77/96 (80.21%), Query Frame = 2
Query:   62 MIIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEI---DVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYLNLPSEIVPATLKK 340
            M++P+KNR  I + LF+EGV  AKKD ++ KHPE+   +VPNL V+K MQS KS+ YV+E FAW H+YWYLTNEGI++LR YL+LP EIVPATL++
Sbjct:    1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRR 96          
BLAST of CN186516 vs. ExPASy Swiss-Prot
Match: RS10_HUMAN (40S ribosomal protein S10 OS=Homo sapiens GN=RPS10 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.285e-28
Identity = 59/96 (61.46%), Postives = 77/96 (80.21%), Query Frame = 2
Query:   62 MIIPEKNRREISKYLFQEGVCYAKKDYNLAKHPEI---DVPNLQVIKLMQSFKSKEYVRETFAWMHYYWYLTNEGIEFLRGYLNLPSEIVPATLKK 340
            M++P+KNR  I + LF+EGV  AKKD ++ KHPE+   +VPNL V+K MQS KS+ YV+E FAW H+YWYLTNEGI++LR YL+LP EIVPATL++
Sbjct:    1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRR 96          
The following BLAST results are available for this feature:
BLAST of CN186516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RS103_ARATH9.794e-4586.6040S ribosomal protein S10-3 OS=Arabidopsis thalian... [more]
RS101_ARATH1.279e-4486.6040S ribosomal protein S10-1 OS=Arabidopsis thalian... [more]
RS10_ORYSJ1.671e-4486.6040S ribosomal protein S10 OS=Oryza sativa subsp. j... [more]
RS102_ARATH1.013e-4184.6940S ribosomal protein S10-2 OS=Arabidopsis thalian... [more]
RS10_SPOFR1.373e-3062.8940S ribosomal protein S10 OS=Spodoptera frugiperda... [more]
RS10_LUMRU1.373e-3062.8940S ribosomal protein S10 OS=Lumbricus rubellus GN... [more]
RS10_ICTPU5.217e-3062.0040S ribosomal protein S10 OS=Ictalurus punctatus G... [more]
RS10_RAT1.285e-2861.4640S ribosomal protein S10 OS=Rattus norvegicus GN=... [more]
RS10_MOUSE1.285e-2861.4640S ribosomal protein S10 OS=Mus musculus GN=Rps10... [more]
RS10_HUMAN1.285e-2861.4640S ribosomal protein S10 OS=Homo sapiens GN=RPS10... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0003A10_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186516 ID=CN186516; Name=CN186516; organism=Citrus sinensis; type=EST; length=740bp
AGTGTGAGATTTGTTCTTCTTTGCCGCCTCTTTTCTCAATCATCACCTCT
TCATCGCAATCATGATCATTCCAGAGAAGAACCGCCGTGAGATCTCCAAG
TACCTCTTCCAAGAGGGTGTGTGCTACGCAAAGAAAGACTACAATTTGGC
AAAGCACCCAGAAATCGATGTCCCGAATCTACAGGTGATTAAGTTGATGC
AGAGCTTCAAGTCAAAGGAGTACGTCCGCGAGACCTTTGCCTGGATGCAT
TATTACTGGTACCTTACCAATGAAGGCATTGAGTTCCTCAGAGGTTACCT
CAATCTTCCTTCTGAAATTGTCCCCGCCACTTTGAAGAAACAGGCCAAGC
CCGCAGGTGGTCGTCCTTTTGGTGGCCCAGGGGGTGATCGCCCACGTGGC
CCACCACGCTTCGATGGTGGAGAGAGAAGATTTGGTGACCGAGATGGATA
CCGCGGAGCTCCACGAGGAGCAGGTGGTGATTTTGGTGACAAGGGTGGAG
CTCCTGCTGACTATCAGCCATCTTTCAGGGGCCCTGGTGGAAGGCCAGGG
TTTGGTCGTGGCGGCGGTGGTTTTGGTGCAGGGTCTGCAAGCTCAAATCT
TCCTTGAGAGATGAGTTCTGCATCTTGAGGGATTTAGGAATTTTGGTTAC
AAGATTGCTGAGTGTATAGCAGTCTTTTTTTGATTGCTGCATTGTTTGGG
ACTGGTTGTGGGGATTTTTTATATATATGTATTTAATTTT
back to top