CN186512

Overview
NameCN186512
Unique NameCN186512
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186512_ssr11 microsatellite CN186512_ssr11:11..28. BLAST: Citrus ESTs to Prunus persica proteins V1
CN186512_ssr171 microsatellite CN186512_ssr171:171..182. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN186512 vs. ExPASy Swiss-Prot
Match: ATHB8_ARATH (Homeobox-leucine zipper protein ATHB-8 OS=Arabidopsis thaliana GN=ATHB-8 PE=1 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 5.348e-57
Identity = 110/129 (85.27%), Postives = 114/129 (88.37%), Query Frame = 3 
Query:  339 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRXXXXXXXXXXXXXXSCESVVTSG 725
            MDNGKYVRYTPEQVEALERLY++CPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVS LVYEN++FR              SCESVVTSG
Sbjct:   11 MDNGKYVRYTPEQVEALERLYNDCPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSHLVYENSYFRQHPQNQGNLATTDTSCESVVTSG 139
[Close]
BLAST of CN186512 vs. ExPASy Swiss-Prot
Match: ATB15_ARATH (Homeobox-leucine zipper protein ATHB-15 OS=Arabidopsis thaliana GN=ATHB-15 PE=1 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 1.009e-55
Identity = 109/129 (84.50%), Postives = 115/129 (89.15%), Query Frame = 3 
Query:  339 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRXXXXXXXXXXXXXXSCESVVTSG 725
            +DNGKYVRYTPEQVEALERLYH+CPKPSS+RRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLV+EN++FR              SCESVVTSG
Sbjct:   13 LDNGKYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVHENSYFR-QHTPNPSLPAKDTSCESVVTSG 140
[Close]
BLAST of CN186512 vs. ExPASy Swiss-Prot
Match: HOX32_ORYSJ (Homeobox-leucine zipper protein HOX32 OS=Oryza sativa subsp. japonica GN=HOX32 PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.780e-52
Identity = 105/129 (81.40%), Postives = 110/129 (85.27%), Query Frame = 3 
Query:  339 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRXXXXXXXXXXXXXXSCESVVTSG 725
            +D GKYVRYTPEQVEALER+Y ECPKPSS+RRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQ VNRKLTAMNKLLMEENDRLQKQVS+LVYEN + R              SCESVVTSG
Sbjct:   28 VDTGKYVRYTPEQVEALERVYGECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSRLVYENGYMR-QQLHNPSVATTDTSCESVVTSG 155
[Close]
BLAST of CN186512 vs. ExPASy Swiss-Prot
Match: HOX32_ORYSI (Homeobox-leucine zipper protein HOX32 OS=Oryza sativa subsp. indica GN=HOX32 PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.780e-52
Identity = 105/129 (81.40%), Postives = 110/129 (85.27%), Query Frame = 3 
Query:  339 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRXXXXXXXXXXXXXXSCESVVTSG 725
            +D GKYVRYTPEQVEALER+Y ECPKPSS+RRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQ VNRKLTAMNKLLMEENDRLQKQVS+LVYEN + R              SCESVVTSG
Sbjct:   28 VDTGKYVRYTPEQVEALERVYGECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQKQVSRLVYENGYMR-QQLHNPSVATTDTSCESVVTSG 155
[Close]
BLAST of CN186512 vs. ExPASy Swiss-Prot
Match: HOX33_ORYSJ (Homeobox-leucine zipper protein HOX33 OS=Oryza sativa subsp. japonica GN=HOX33 PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.154e-51
Identity = 104/129 (80.62%), Postives = 109/129 (84.50%), Query Frame = 3 
Query:  339 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRXXXXXXXXXXXXXXSCESVVTSG 725
            +D GKYVRYTPEQVEALER+Y ECPKPSS+RRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQ VNRKL AMNKLLMEENDRLQKQVS+LVYEN + R              SCESVVTSG
Sbjct:   25 VDAGKYVRYTPEQVEALERVYTECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLNAMNKLLMEENDRLQKQVSRLVYENGYMR-TQLHNPSAATTDTSCESVVTSG 152
[Close]
BLAST of CN186512 vs. ExPASy Swiss-Prot
Match: HOX33_ORYSI (Homeobox-leucine zipper protein HOX33 OS=Oryza sativa subsp. indica GN=HOX33 PE=2 SV=2)

HSP 1 Score: 203.371 bits (516), Expect = 1.154e-51
Identity = 104/129 (80.62%), Postives = 109/129 (84.50%), Query Frame = 3 
Query:  339 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRXXXXXXXXXXXXXXSCESVVTSG 725
            +D GKYVRYTPEQVEALER+Y ECPKPSS+RRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQ VNRKL AMNKLLMEENDRLQKQVS+LVYEN + R              SCESVVTSG
Sbjct:   25 VDAGKYVRYTPEQVEALERVYTECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLNAMNKLLMEENDRLQKQVSRLVYENGYMR-TQLHNPSAATTDTSCESVVTSG 152
[Close]
BLAST of CN186512 vs. ExPASy Swiss-Prot
Match: ATB14_ARATH (Homeobox-leucine zipper protein ATHB-14 OS=Arabidopsis thaliana GN=ATHB-14 PE=1 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.842e-50
Identity = 101/129 (78.29%), Postives = 107/129 (82.95%), Query Frame = 3 
Query:  339 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRXXXXXXXXXXXXXXSCESVVTSG 725
            +D+GKYVRYTPEQVEALER+Y ECPKPSS+RRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEA+RLQ VNRKL AMNKLLMEENDRLQKQVS LVYEN   +              SCESVV SG
Sbjct:   21 LDSGKYVRYTPEQVEALERVYTECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEAARLQTVNRKLNAMNKLLMEENDRLQKQVSNLVYENGHMK-HQLHTASGTTTDNSCESVVVSG 148
[Close]
BLAST of CN186512 vs. ExPASy Swiss-Prot
Match: ATBH9_ARATH (Homeobox-leucine zipper protein ATHB-9 OS=Arabidopsis thaliana GN=ATHB-9 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.080e-49
Identity = 99/128 (77.34%), Postives = 107/128 (83.59%), Query Frame = 3 
Query:  342 DNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRXXXXXXXXXXXXXXSCESVVTSG 725
            D+GKYVRYTPEQVEALER+Y ECPKPSS+RRQQLIRECPIL NIEP+QIKVWFQNRRCREKQRKE++RLQ VNRKL+AMNKLLMEENDRLQKQVS LVYEN F +              SCESVV SG
Sbjct:   18 DSGKYVRYTPEQVEALERVYAECPKPSSLRRQQLIRECPILCNIEPRQIKVWFQNRRCREKQRKESARLQTVNRKLSAMNKLLMEENDRLQKQVSNLVYENGFMK-HRIHTASGTTTDNSCESVVVSG 144
[Close]
BLAST of CN186512 vs. ExPASy Swiss-Prot
Match: HOX9_ORYSJ (Homeobox-leucine zipper protein HOX9 OS=Oryza sativa subsp. japonica GN=HOX9 PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.406e-49
Identity = 98/128 (76.56%), Postives = 109/128 (85.16%), Query Frame = 3 
Query:  339 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRXXXXXXXXXXXXXXSCESVVTS 722
            MD+GKYVRYTPEQVEALER+Y ECPKPSS RRQQL+R+CPIL+NIEPKQIKVWFQNRRCR+KQRKEASRLQAVNRKLTAMNKLLMEEN+RLQKQVSQLV+EN + +              SCES VT+
Sbjct:   25 MDSGKYVRYTPEQVEALERVYAECPKPSSSRRQQLLRDCPILANIEPKQIKVWFQNRRCRDKQRKEASRLQAVNRKLTAMNKLLMEENERLQKQVSQLVHENAYMK--QQLQNPSLGNDTSCESNVTT 150
[Close]
BLAST of CN186512 vs. ExPASy Swiss-Prot
Match: HOX9_ORYSI (Homeobox-leucine zipper protein HOX9 OS=Oryza sativa subsp. indica GN=HOX9 PE=2 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 2.406e-49
Identity = 98/128 (76.56%), Postives = 109/128 (85.16%), Query Frame = 3 
Query:  339 MDNGKYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENTFFRXXXXXXXXXXXXXXSCESVVTS 722
            MD+GKYVRYTPEQVEALER+Y ECPKPSS RRQQL+R+CPIL+NIEPKQIKVWFQNRRCR+KQRKEASRLQAVNRKLTAMNKLLMEEN+RLQKQVSQLV+EN + +              SCES VT+
Sbjct:   25 MDSGKYVRYTPEQVEALERVYAECPKPSSSRRQQLLRDCPILANIEPKQIKVWFQNRRCRDKQRKEASRLQAVNRKLTAMNKLLMEENERLQKQVSQLVHENAYMK--QQLQNPSLGNDTSCESNVTT 150
The following BLAST results are available for this feature:
BLAST of CN186512 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
ATHB8_ARATH5.348e-5785.27Homeobox-leucine zipper protein ATHB-8 OS=Arabidop... [more]
ATB15_ARATH1.009e-5584.50Homeobox-leucine zipper protein ATHB-15 OS=Arabido... [more]
HOX32_ORYSJ1.780e-5281.40Homeobox-leucine zipper protein HOX32 OS=Oryza sat... [more]
HOX32_ORYSI1.780e-5281.40Homeobox-leucine zipper protein HOX32 OS=Oryza sat... [more]
HOX33_ORYSJ1.154e-5180.62Homeobox-leucine zipper protein HOX33 OS=Oryza sat... [more]
HOX33_ORYSI1.154e-5180.62Homeobox-leucine zipper protein HOX33 OS=Oryza sat... [more]
ATB14_ARATH2.842e-5078.29Homeobox-leucine zipper protein ATHB-14 OS=Arabido... [more]
ATBH9_ARATH1.080e-4977.34Homeobox-leucine zipper protein ATHB-9 OS=Arabidop... [more]
HOX9_ORYSJ2.406e-4976.56Homeobox-leucine zipper protein HOX9 OS=Oryza sati... [more]
HOX9_ORYSI2.406e-4976.56Homeobox-leucine zipper protein HOX9 OS=Oryza sati... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003A08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186512 ID=CN186512; Name=CN186512; organism=Citrus sinensis; type=EST; length=767bp
AGTACCACCATCTCTCTCTCTCTCTCTCTTTCATATTTTTCTTGTTTATA
TTCTCTCTATCATTCATTGATTCATTTAATACAAGAAGTGAGGAACCGAG
CACAACTCCAAGGTCTTTTTCTTTTAACTGTGTCTTGTTCCGGTACGTGT
AACGTTAATGGCTCGTATAACACCACCACCACCATCTTCTTATTAGCTTT
CCTCGTTTGAAGCAGCAGCAGTCACACAGCTGTGATCGATCGGATCATCT
TGAAGGTTCAAGAAATTACGAGATCATGATGGCGGTGAGCTCGGGGGGCA
GCAGGGACAGCAGGGACAGCGGCGGGCAGAAGATGATAATGGACAACGGG
AAGTACGTTCGGTACACACCTGAACAAGTTGAAGCGCTTGAAAGGCTGTA
CCACGAGTGCCCAAAACCAAGCTCTATGCGCCGCCAGCAGCTCATCCGAG
AGTGTCCTATTCTCTCTAACATCGAACCTAAGCAGATCAAAGTCTGGTTC
CAAAACAGAAGGTGTCGGGAGAAGCAAAGGAAAGAAGCGTCTCGCCTTCA
GGCTGTGAACAGAAAGCTGACGGCTATGAACAAGCTGTTGATGGAGGAAA
ATGATCGGCTGCAAAAGCAAGTGTCACAGCTGGTGTATGAGAACACTTTT
TTCCGCCAGCAGACACAAAATGCCGCCACGCTGGCCACCACAGACACTAG
TTGTGAATCAGTGGTGACGAGTGGTCAGCACCATTTGACTCCTCAGCAGC
AGCATCAGCATCCACCA
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