CN186509

Overview
NameCN186509
Unique NameCN186509
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2092 contig Csv1_Contig2092:1243..2003. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186509 vs. ExPASy Swiss-Prot
Match: ERF1Z_ARATH (Eukaryotic peptide chain release factor subunit 1-3 OS=Arabidopsis thaliana GN=ERF1-3 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.716e-28
Identity = 57/67 (85.07%), Postives = 63/67 (94.03%), Query Frame = -2
Query:  560 EKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYDDSE 760
            EK  LLEWFANEY+RFGCTLEFVTNKSQEGSQFCRGFGGIGG+LRYQLDMR+FDE S DGE+Y+DS+
Sbjct:  370 EKMPLLEWFANEYKRFGCTLEFVTNKSQEGSQFCRGFGGIGGLLRYQLDMRTFDELS-DGEVYEDSD 435          
BLAST of CN186509 vs. ExPASy Swiss-Prot
Match: ERF1Y_ARATH (Eukaryotic peptide chain release factor subunit 1-2 OS=Arabidopsis thaliana GN=ERF1-2 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.685e-27
Identity = 56/67 (83.58%), Postives = 62/67 (92.54%), Query Frame = -2
Query:  560 EKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYDDSE 760
            EK  LLEWFANEY+RFGCTLEFVTNKSQEGSQFCRGFGGIGG+LRYQLDMR+FDE SD  E+Y+DS+
Sbjct:  369 EKMPLLEWFANEYKRFGCTLEFVTNKSQEGSQFCRGFGGIGGMLRYQLDMRTFDELSDT-EVYEDSD 434          
BLAST of CN186509 vs. ExPASy Swiss-Prot
Match: ERF1X_ARATH (Eukaryotic peptide chain release factor subunit 1-1 OS=Arabidopsis thaliana GN=ERF1-1 PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 6.950e-25
Identity = 55/65 (84.62%), Postives = 57/65 (87.69%), Query Frame = -2
Query:  566 EKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYDD 760
            EK SLLEW ANEYRRFGC LEFVTNKSQEGSQFCRGFGGIGGILRYQLDM +FD  S+DGE  DD
Sbjct:  371 EKLSLLEWLANEYRRFGCALEFVTNKSQEGSQFCRGFGGIGGILRYQLDMTAFD--SEDGEALDD 433          
BLAST of CN186509 vs. ExPASy Swiss-Prot
Match: ERF1_DICDI (Eukaryotic peptide chain release factor subunit 1 OS=Dictyostelium discoideum GN=erf1 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 7.443e-19
Identity = 41/68 (60.29%), Postives = 54/68 (79.41%), Query Frame = -2
Query:  560 EKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSD-DGEIYDDSE 760
            E+  ++EWFAN Y+ FG +LEFVTNKSQEGSQFC+GFGG+GG+LRYQ+D    ++F + D   YDDS+
Sbjct:  371 EEMPIVEWFANNYKNFGASLEFVTNKSQEGSQFCKGFGGLGGLLRYQVDFAQLNDFDNPDENEYDDSD 438          
BLAST of CN186509 vs. ExPASy Swiss-Prot
Match: ERF1_POLMI (Eukaryotic peptide chain release factor subunit 1 OS=Polyandrocarpa misakiensis GN=ERF1 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.828e-18
Identity = 40/65 (61.54%), Postives = 52/65 (80.00%), Query Frame = -2
Query:  566 EKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYDD 760
            E  SLLEWFAN Y++FG TLE VT++SQEGSQF +GFGGIGG+LRY++D +  +   DD ++YDD
Sbjct:  370 ESCSLLEWFANNYKKFGSTLEIVTDRSQEGSQFVKGFGGIGGMLRYRIDFQGMEFNDDDPDLYDD 434          
BLAST of CN186509 vs. ExPASy Swiss-Prot
Match: ERF1_XENLA (Eukaryotic peptide chain release factor subunit 1 OS=Xenopus laevis GN=etf1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.334e-17
Identity = 40/64 (62.50%), Postives = 48/64 (75.00%), Query Frame = -2
Query:  569 EKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYD 760
            E   LLEWFAN Y++FG TLE VT+KSQEGSQF +GFGGIGGILRY++D +  D    D E +D
Sbjct:  370 ESMPLLEWFANSYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGMDYQGVDDEFFD 433          
BLAST of CN186509 vs. ExPASy Swiss-Prot
Match: ERF1_XENTR (Eukaryotic peptide chain release factor subunit 1 OS=Xenopus tropicalis GN=etf1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.098e-17
Identity = 39/64 (60.94%), Postives = 48/64 (75.00%), Query Frame = -2
Query:  569 EKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYD 760
            E   LLEWFAN Y++FG TLE VT+KSQEGSQF +GFGGIGGILRY++D +  +    D E +D
Sbjct:  370 ESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGMEYQGGDDEFFD 433          
BLAST of CN186509 vs. ExPASy Swiss-Prot
Match: ERF1_RAT (Eukaryotic peptide chain release factor subunit 1 OS=Rattus norvegicus GN=Etf1 PE=2 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 9.098e-17
Identity = 39/64 (60.94%), Postives = 48/64 (75.00%), Query Frame = -2
Query:  569 EKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYD 760
            E   LLEWFAN Y++FG TLE VT+KSQEGSQF +GFGGIGGILRY++D +  +    D E +D
Sbjct:  370 ESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGMEYQGGDDEFFD 433          
BLAST of CN186509 vs. ExPASy Swiss-Prot
Match: ERF1_RABIT (Eukaryotic peptide chain release factor subunit 1 OS=Oryctolagus cuniculus GN=ETF1 PE=2 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 9.098e-17
Identity = 39/64 (60.94%), Postives = 48/64 (75.00%), Query Frame = -2
Query:  569 EKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYD 760
            E   LLEWFAN Y++FG TLE VT+KSQEGSQF +GFGGIGGILRY++D +  +    D E +D
Sbjct:  370 ESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGMEYQGGDDEFFD 433          
BLAST of CN186509 vs. ExPASy Swiss-Prot
Match: ERF1_PONAB (Eukaryotic peptide chain release factor subunit 1 OS=Pongo abelii GN=ETF1 PE=2 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 9.098e-17
Identity = 39/64 (60.94%), Postives = 48/64 (75.00%), Query Frame = -2
Query:  569 EKSSLLEWFANEYRRFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDMRSFDEFSDDGEIYD 760
            E   LLEWFAN Y++FG TLE VT+KSQEGSQF +GFGGIGGILRY++D +  +    D E +D
Sbjct:  370 ESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGMEYQGGDDEFFD 433          
The following BLAST results are available for this feature:
BLAST of CN186509 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
ERF1Z_ARATH6.716e-2885.07Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1Y_ARATH5.685e-2783.58Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1X_ARATH6.950e-2584.62Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1_DICDI7.443e-1960.29Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_POLMI2.828e-1861.54Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_XENLA5.334e-1762.50Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_XENTR9.098e-1760.94Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_RAT9.098e-1760.94Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_RABIT9.098e-1760.94Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_PONAB9.098e-1760.94Eukaryotic peptide chain release factor subunit 1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0003A07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0003A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186509 ID=CN186509; Name=CN186509; organism=Citrus sinensis; type=EST; length=761bp
CAAAAGTATCACTTTATTATTATAGCAAGCCATGGCCTACCCATTATGGA
GATCTAACAAGCATGTTTAAACAACATAACCTCCCACAAATAACCCAGTC
CGATAGACAACAGGAGATCCATCACACTAATTAACATGCATTGTACAAAC
AATAGAACCATAAAAAGATAAACCCAAGTCTGAGAGAACAGTTTCAATCC
ACAAGCCCCTAGGGCTTGCCATGGGAGAGATCCCCATATCCATCATCTGA
ATGCGAGGGATTCGTAAGGTCCTCTCCAACATTAGCTAGTAGCTTTGCAT
AATTCCTCCCTTCTGGAGCTAGTAGCTTTGCATAATTCCTCCCTTCTGGA
TCATACCCAGCAGCGCCATTACAAAGCCCATATAACAGAATCATACATAG
CTTGCTCAGCTAAGACACGACATAAACGTACCTCAGCAGCAACTTGGGAA
CATTTTGGAACATAGGTACTCCAAAGTTGGCGCGACGAATCGCGCGCTGG
TGCAGGCCCTTCACGTCGTCATCCTGCACCAGCAATGGGGTAGGTTTGAT
TGATTGCTATTCAGAATCATCATAAATTTCTCCATCATCAGAAAACTCAT
CAAATGATCTCATATCAAGCTGGTAGCGGAGTATTCCACCAATACCACCA
AAGCCTCTGCAAAACTGGGATCCCTCTTGTGATTTGTTGGTAACAAACTC
GAGTGTGCAACCAAACCTCCTGTATTCATTTGCAAACCACTCAAGCAGCG
ATGACTTTTCC
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