CX675011

Overview
NameCX675011
Unique NameCX675011
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX675011_ssr739 microsatellite CX675011_ssr739:739..750. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10372 contig Csv1_Contig10372:341..1195. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX675011 vs. ExPASy Swiss-Prot
Match: GLO2N_ARATH (Hydroxyacylglutathione hydrolase 2, mitochondrial OS=Arabidopsis thaliana GN=At2g31350 PE=1 SV=1)

HSP 1 Score: 373.629 bits (958), Expect = 7.663e-103
Identity = 177/236 (75.00%), Postives = 205/236 (86.86%), Query Frame = -1
Query:  148 DMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXLELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSYAAHIAQLRSKGVPTIPTTIKMEKSCNPFLRTSSPEIRQSLRIPDTADDSEALGVIRQAKDNF 855
            D DTGTVGVVDPSEA P+ID+L R  RNLTYI             LELK RYGAKVIGS +DKDRIPGID+ L DGDKWMFAGHEVHV+DTPGHT+GHIS YFPGS A+FTGDT+FSLSCGKLFEGTP QM +SLQKI SLPDDT++YCGHEYTLSNSKFALS+EPNNE LQSYAAH+A+LRSK +PTIPTT+KMEK+CNPFLR+S+ +IR++LRIP+ AD++EALG+IR+AKD+F
Sbjct:   89 DEDTGTVGVVDPSEAEPIIDSLKRSGRNLTYILNTHHHYDHTGGNLELKDRYGAKVIGSAMDKDRIPGIDMALKDGDKWMFAGHEVHVMDTPGHTKGHISLYFPGSRAIFTGDTMFSLSCGKLFEGTPKQMLASLQKITSLPDDTSIYCGHEYTLSNSKFALSLEPNNEVLQSYAAHVAELRSKKLPTIPTTVKMEKACNPFLRSSNTDIRRALRIPEAADEAEALGIIRKAKDDF 324          
BLAST of CX675011 vs. ExPASy Swiss-Prot
Match: GLO2M_ARATH (Hydroxyacylglutathione hydrolase 1, mitochondrial OS=Arabidopsis thaliana GN=GLX2-1 PE=2 SV=2)

HSP 1 Score: 340.887 bits (873), Expect = 5.504e-93
Identity = 165/236 (69.92%), Postives = 191/236 (80.93%), Query Frame = -1
Query:  148 DMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXLELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSYAAHIAQLRSKGVPTIPTTIKMEKSCNPFLRTSSPEIRQSLRIPDTADDSEALGVIRQAKDNF 855
            D DTGTVGVVDPSEA PVI+ALSRKN NLTYI              ELK RYGAKVIGS VDKDRIPGIDI+L D DKWMFAGHEV ++DTPGHT+GHISFYFPGSA +FTGD ++SLSCG L EGTP QM SSLQKI+SLPDDTN+YCG E T  N KFALS+EP NE LQSYA  +A LRS+G+P+IPTT+K+EK+CNPFLR SS +IR+SL IPD+A ++EAL  I++A+D F
Sbjct:   96 DEDTGTVGVVDPSEAAPVIEALSRKNWNLTYILNTHHHDDHIGGNAELKERYGAKVIGSAVDKDRIPGIDILLKDSDKWMFAGHEVRILDTPGHTQGHISFYFPGSATIFTGDLIYSLSCGTLSEGTPEQMLSSLQKIVSLPDDTNIYCGRENTAGNLKFALSVEPKNETLQSYATRVAHLRSQGLPSIPTTVKVEKACNPFLRISSKDIRKSLSIPDSATEAEALRRIQRARDRF 331          
BLAST of CX675011 vs. ExPASy Swiss-Prot
Match: GLO2_RHIME (Hydroxyacylglutathione hydrolase OS=Rhizobium meliloti GN=gloB PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 8.591e-54
Identity = 105/236 (44.49%), Postives = 145/236 (61.44%), Query Frame = -1
Query:  148 DMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXLELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSYAAHIAQLRSKGVPTIPTTIKMEKSCNPFLRTSSPEIRQSLRIPDTADDSEALGVIRQAKDNF 855
            D  +G    +D  E  P++DAL R+   LT+I               LK R+G  +IG   +  +IPGID  +  GD++ FAGH V VI+TPGHT GH+ ++ P    +F  DTLF+L CG+LFEGT   M+ SL ++M+LPDDT +Y GHEYTL+N+ FA++++P N AL+  AA I + RS G  T PTT+ +EK  NPFLR   P+IR  L + + A D+     IR+ KDNF
Sbjct:   22 DRLSGATASIDAPEERPILDALERRGWQLTHILTTHHHGDHVAANASLKERFGLTIIGPKNEASKIPGIDRTVGHGDRFDFAGHPVDVIETPGHTSGHVCYHLPEDKLLFAADTLFALGCGRLFEGTADTMWQSLSRLMALPDDTAIYFGHEYTLANAHFAITVDPENSALKERAAEIEETRSDGGFTAPTTMGLEKRTNPFLRAGDPKIRALLGM-EKASDAAVFAEIRKRKDNF 256          
BLAST of CX675011 vs. ExPASy Swiss-Prot
Match: GLO2_RHIEC (Hydroxyacylglutathione hydrolase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=gloB PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.620e-52
Identity = 104/236 (44.07%), Postives = 148/236 (62.71%), Query Frame = -1
Query:  148 DMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXLELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSYAAHIAQLRSKGVPTIPTTIKMEKSCNPFLRTSSPEIRQSLRIPDTADDSEALGVIRQAKDNF 855
            D +TG    +D  E  P+++A +R+   +T+I             L LK ++G ++IG   +   IPG+D  + DGD ++F  H V VI+TPGHT GHI ++F     +F  DTLF+L CG+LFE     M+ SLQK+  LPD+T VY GHEYTLSN++FAL+++P+NE L+S AA I  LR++G  T+PTT+ +EK  NPFLR + P IR+ L I +   + E    IR+ KDNF
Sbjct:   22 DPETGFTAAIDAPEEAPILEAATRRGWKITHIFTTHHHTDHVAANLALKEQFGCEIIGPINEAIAIPGLDRTMADGDSFLFGDHTVKVIETPGHTAGHICYHFVDDKLLFAADTLFALGCGRLFERPAADMWHSLQKLAVLPDETAVYFGHEYTLSNARFALTVDPDNERLKSRAAEIEALRAEGKFTVPTTLGLEKETNPFLRAADPAIRRHL-IMEGKTNEEVFAEIRKRKDNF 256          
BLAST of CX675011 vs. ExPASy Swiss-Prot
Match: GLO2_OCHA4 (Hydroxyacylglutathione hydrolase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=gloB PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.620e-52
Identity = 108/236 (45.76%), Postives = 144/236 (61.02%), Query Frame = -1
Query:  148 DMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXLELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSYAAHIAQLRSKGVPTIPTTIKMEKSCNPFLRTSSPEIRQSLRIPDTADDSEALGVIRQAKDNF 855
            D  +     +D  +A  +  AL R+   L +I               LKA+YG  +IG   ++ +IPGID  + DGD++ F    V VI TPGHT G +S+Y P + AVFTGDTLF+L CG+LFEGTP  MF SLQK+++LP DT VYCGHEYT SN++FAL+I+P N AL+  AA IA+LR+    T+P++I +E + NPFLR     IR  L + D A D      IR+ KD F
Sbjct:   26 DPQSALTASIDAPDAAAIEAALKRRGWTLDFIFTTHHHLDHVEGNEALKAKYGVSIIGPKAEETKIPGIDRTVKDGDEFTFGLFRVKVIATPGHTAGEVSYYLPDAKAVFTGDTLFALGCGRLFEGTPLTMFQSLQKLVALPGDTAVYCGHEYTESNARFALTIDPANSALKERAAEIARLRAADRMTLPSSIALEMATNPFLRWHDAGIRSRLGLQD-APDEAVFAEIRKRKDMF 260          
BLAST of CX675011 vs. ExPASy Swiss-Prot
Match: GLO2_RHIL3 (Hydroxyacylglutathione hydrolase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=gloB PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.609e-52
Identity = 103/236 (43.64%), Postives = 149/236 (63.14%), Query Frame = -1
Query:  148 DMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXLELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSYAAHIAQLRSKGVPTIPTTIKMEKSCNPFLRTSSPEIRQSLRIPDTADDSEALGVIRQAKDNF 855
            D +TG    +D  E  P+++A +R+   +T+I             L LK ++G ++IG   +   IPG+D  + DGD ++F  H V+VI+TPGHT GHI ++F     +F  DTLF+L CG+LFE     M+ SLQK+  LPD+T VY GHEYTLSN++FAL+++P+NE L+S AA I  LR+ G  TIPTT+ +EK  NPFLR + P IR++L + +   + E    IR+ KD+F
Sbjct:   22 DPETGFTAAIDAPEEAPILEAATRRGWKITHIFTTHHHTDHVTANLALKEQFGCEIIGPINEAVAIPGLDRAMADGDSFLFGDHTVNVIETPGHTAGHICYHFVDDKLLFAADTLFALGCGRLFERPAADMWHSLQKLAVLPDETAVYFGHEYTLSNARFALTVDPDNERLKSRAAEIEALRADGKFTIPTTLGLEKETNPFLRAADPAIRRNL-VMEGKTNEEVFAEIRKRKDHF 256          
BLAST of CX675011 vs. ExPASy Swiss-Prot
Match: GLO2_SILPO (Hydroxyacylglutathione hydrolase OS=Silicibacter pomeroyi GN=gloB PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 6.156e-52
Identity = 105/236 (44.49%), Postives = 146/236 (61.86%), Query Frame = -1
Query:  148 DMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXLELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSYAAHIAQLRSKGVPTIPTTIKMEKSCNPFLRTSSPEIRQSLRIPDTADDSEALGVIRQAKDNF 855
            D D G   +VD  EA P+   L R+  +L  +               L+ RY   VIG+  D  R+P +D+ +++GD++   G  V V+D  GHT GHI+F+ P   AVFT D+L +L CG+LFEGTP QM++SL K+ +LPDDT V  GHEYT SN++FALS++P+N AL++ AA I Q R++G PT+P+ + +EKS NPFLR + P I QSL     AD +     IR  KD+F
Sbjct:   21 DADAGKTALVDAPEAAPIQSELDRRGWSLDQVWLTHHHWDHVDGLAALRDRYKPTVIGAEADAHRLPPLDLAVSEGDRFDLGGAPVEVLDVSGHTVGHIAFHLPTGKAVFTADSLMALGCGRLFEGTPDQMWASLSKLAALPDDTLVCSGHEYTQSNARFALSVDPDNAALKTRAAEIDQARAEGRPTVPSLLSLEKSTNPFLRAADPGI-QSLLGMQGADPARVFAEIRARKDHF 255          
BLAST of CX675011 vs. ExPASy Swiss-Prot
Match: GLO2_MARMM (Hydroxyacylglutathione hydrolase OS=Maricaulis maris (strain MCS10) GN=gloB PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.990e-51
Identity = 99/236 (41.95%), Postives = 141/236 (59.75%), Query Frame = -1
Query:  148 DMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXLELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSYAAHIAQLRSKGVPTIPTTIKMEKSCNPFLRTSSPEIRQSLRIPDTADDSEALGVIRQAKDNF 855
            D D+G    +D  +A  +++   +   ++T I               ++A  GAKV+    D+ RIPGI + + DGD      H+  V  TPGHT GH+ ++ P     F GDTLF+L CG+LFEGTP +M+ SL ++ +LPD+T +YC HEYT +N++FALSI+P+N  LQ YAA +   R++G PT+PTTI  EK+ NPFLR   P IR  L + +  DD E    IR+ KD+F
Sbjct:   22 DPDSGETATIDTPDADVILNEADQAGWSITQIWNTHHHFDHAGGNETIQALTGAKVVAPRYDRHRIPGISMEVEDGDVISLGDHKAKVFYTPGHTMGHVCYHMPMDGIAFVGDTLFALGCGRLFEGTPAEMWHSLSRLAALPDETRIYCAHEYTEANARFALSIDPDNHDLQVYAAMVEGERARGEPTVPTTIAAEKAANPFLRPDDPAIRARLGM-EHDDDEEVFAEIRRRKDSF 256          
BLAST of CX675011 vs. ExPASy Swiss-Prot
Match: GLO2_METCA (Hydroxyacylglutathione hydrolase OS=Methylococcus capsulatus GN=gloB PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 1.161e-50
Identity = 98/233 (42.06%), Postives = 143/233 (61.37%), Query Frame = -1
Query:  148 TGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXLELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSYAAHIAQLRSKGVPTIPTTIKMEKSCNPFLRTSSPEIRQSLRIPDTADDSEALGVIRQAKDNF 846
            +G    VDP+ A PV++AL  +   L ++             LELKA  G  V+G+  D+ RIPGID+ L DG+++        ++D PGHT GH++F+F   AA+F GDTLF+L CG+LFEG+  QM+ SL+++ +LP +T V+C HEYT +N++FA++IEP N AL+     +  LR +G  T+P+ +  E + NPFLR  SPEIR  L +P    + E    IR+ KD F
Sbjct:   23 SGATAAVDPAVAGPVLEALDARGWRLGHVLNTHHHGDHVGGNLELKAATGCTVVGAAGDRHRIPGIDVALKDGEEFRLGSASARMLDVPGHTSGHVAFWFEDDAALFCGDTLFALGCGRLFEGSAEQMWRSLERLRALPAETKVFCAHEYTQANARFAVTIEPGNAALRERVERVEALRREGAATVPSILSEELATNPFLRPESPEIRARLGLPG-VPEVEVFAEIRRRKDVF 254          
BLAST of CX675011 vs. ExPASy Swiss-Prot
Match: GLO2_BRUSU (Hydroxyacylglutathione hydrolase OS=Brucella suis GN=gloB PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 1.516e-50
Identity = 103/236 (43.64%), Postives = 143/236 (60.59%), Query Frame = -1
Query:  148 DMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXLELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSLSCGKLFEGTPGQMFSSLQKIMSLPDDTNVYCGHEYTLSNSKFALSIEPNNEALQSYAAHIAQLRSKGVPTIPTTIKMEKSCNPFLRTSSPEIRQSLRIPDTADDSEALGVIRQAKDNF 855
            D ++     +D  +A  +  AL R+   L +I               LK ++G  +IG   +K +IPGID  +  GD++ F   +V VI TPGHT G IS+Y P +  VFTGDTLF+L CG+LFEGTP  MF SL+K+++LP DT +YCGHEYT +N++FAL+I+P+N AL+  A  IA+LR+    T+P+TI +E + NPFLR     IR  L + D A D      IR+ KD F
Sbjct:   23 DPESALTATIDAPDAYAIEAALERRGWTLDFIFTTHHHLDHVEGNEPLKEKFGVSIIGPEAEKAKIPGIDRTVKGGDEFTFGLFKVKVISTPGHTAGGISYYLPDAKVVFTGDTLFALGCGRLFEGTPATMFHSLEKLVALPGDTALYCGHEYTQNNARFALTIDPDNSALKERAKEIARLRAHERMTLPSTIALEMATNPFLRWHDRTIRARLGLQD-APDEAVFAEIRKRKDMF 257          
The following BLAST results are available for this feature:
BLAST of CX675011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 290
Match NameE-valueIdentityDescription
GLO2N_ARATH7.663e-10375.00Hydroxyacylglutathione hydrolase 2, mitochondrial ... [more]
GLO2M_ARATH5.504e-9369.92Hydroxyacylglutathione hydrolase 1, mitochondrial ... [more]
GLO2_RHIME8.591e-5444.49Hydroxyacylglutathione hydrolase OS=Rhizobium meli... [more]
GLO2_RHIEC1.620e-5244.07Hydroxyacylglutathione hydrolase OS=Rhizobium etli... [more]
GLO2_OCHA41.620e-5245.76Hydroxyacylglutathione hydrolase OS=Ochrobactrum a... [more]
GLO2_RHIL33.609e-5243.64Hydroxyacylglutathione hydrolase OS=Rhizobium legu... [more]
GLO2_SILPO6.156e-5244.49Hydroxyacylglutathione hydrolase OS=Silicibacter p... [more]
GLO2_MARMM3.990e-5141.95Hydroxyacylglutathione hydrolase OS=Maricaulis mar... [more]
GLO2_METCA1.161e-5042.06Hydroxyacylglutathione hydrolase OS=Methylococcus ... [more]
GLO2_BRUSU1.516e-5043.64Hydroxyacylglutathione hydrolase OS=Brucella suis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_59B01_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-59B01-C1-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX675011 ID=CX675011; Name=CX675011; organism=Citrus sinensis; type=EST; length=855bp
TTTTTTTTTTTTTTTTTGGGACAAATGACAAAGTAAAAATTAAAATTGAA
AACAAAAAAAAGGTTAAAATGTATACATTGGTGGTTTTATTTCATATTGG
CACCAGCTACTCTCTGTACACAAACAATAGTAGTTAAAACGATCCTAGAA
GTTATCCTTTGCTTGACGAATGACACCTAAGGCTTCTGAATCATCTGCAG
TGTCTGGAATGCGCAATGACTGCCGGATTTCTGGACTTGACGTGCGAAGA
AATGGATTACATGACTTCTCCATCTTTATTGTTGTTGGGATCGTGGGCAC
ACCCTTGCTTCGAAGTTGGGCTATGTGCGCTGCATATGATTGAAGGGCCT
CATTGTTGGGTTCTATGGACAATGCAAATTTTGAATTACTCAGCGTATAT
TCATGACCACAATATACATTTGTATCATCTGGCAGAGACATTATCTTCTG
AAGGGAAGAAAACATCTGCCCAGGGGTTCCTTCAAAAAGCTTGCCACAGG
ATAAGCTGAACAAGGTGTCCCCAGTAAAAACTGCCGCTGATCCAGGAAAG
TAGAAGCTAATATGACCTCGGGTATGGCCAGGCGTATCAATCACATGCAC
CTCATGACCAGCAAACATCCATTTGTCTCCATCATTCAAAACTATATCAA
TGCCAGGGATCCTATCCTTGTCTACTCCTGAACCAATCACCTTTGCACCG
TACCTTGCTTTTAGCTCCAAATTACCACCGGTGTGATCATGATGATGATG
TGTATTTAGAATGTAAGTCAGATTTCGGTTTTTCCTACTCAAAGCATCTA
TCACAGGAACAGCTTCAGAAGGATCAACAACTCCGACAGTACCTGTGTCC
ATGTC
back to top