CX675003 | Citrus Genome Database

Overview


Name	CX675003
Unique Name	CX675003
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	937

Libraries


Library Name	Type
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
CX675003_ssr110	microsatellite	CX675003_ssr110:110..125.	BLAST: Citrus ESTs to Prunus persica proteins V1
CX675003_ssr681	microsatellite	CX675003_ssr681:681..700.	BLAST: Citrus ESTs to Prunus persica proteins V1
CX675003_ssr734	microsatellite	CX675003_ssr734:734..745.	BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5466	contig	Csv1_Contig5466:225..1161.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

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BLAST of CX675003 vs. ExPASy Swiss-Prot
Match: RTNLM_ARATH (Reticulon-like protein B13 OS=Arabidopsis thaliana GN=RTNLB13 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.459e-12
Identity = 33/71 (46.48%), Postives = 45/71 (63.38%), Query Frame = -1

Query:  422 PKLSGLEISEKSALEVANSFRGVVEEFTRWMFHVSVEKEWFVFAQAVAGLLVLSYVATFSDLLTLLYTGII 634
            P+LSGLE+SE+  +E   S R ++EE  RWMF V  E EWFVFA+ V G  +LS +    D  T L+ G++
Sbjct:   79 PELSGLEVSEEFVVETVRSCRMLMEEMVRWMFRVGAESEWFVFARTVLGFWILSRIGNLLDFHTCLFIGLV 149

The following BLAST results are available for this feature:

BLAST of CX675003 vs. ExPASy Swiss-Prot

BLAST of CX675003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1


Match Name	E-value	Identity	Description
RTNLM_ARATH	2.459e-12	46.48	Reticulon-like protein B13 OS=Arabidopsis thaliana...	[more]

Properties


Property Name	Value
Genbank description	UCRCS08_59A09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-59A09-A17-1-6.b, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX675003 ID=CX675003; Name=CX675003; organism=Citrus sinensis; type=EST; length=937bp
TTTTTTTTAAAGACGTATTCTATTAATCGACAGCTGATAGAGAAGTTCAT
TAAATATAAAAGGAAAATGTACACTGCTTAAATAATATTATAAATACGAA
ATTAAGAGCCATGCATGCATGCATGGAGAGATGCAATTACTACTCGATCT
TCTTCTCCTTGATCTCCTCTTTGTCTTTGGTGACAAACTTGCTCTTCAAT
TTCTTAATTACCTTCTCATCGACCTCCTCGTAAAATCTCCTTGATTTCGC
CTTCGCCGTCTCCCCACATCTCTTTATTTTATCCCCATTTTTTCATATAT
CACAGGAACCGTCATCCCCATCACAATTCCTGCAAGAAACGCAATTTTAT
AGTTCATTAACAGTTGCATGTGATTGTGAGAAAAGATGTGCACATAAGAG
TTTCTTTCTTTTGATGCACTAAATAATACCCGTGTAAAGGAGAGTAAGAA
GATCAGAAAATGTGGCCACATAGGAGAGCACTAGCAATCCAGCAACTGCT
TGAGCAAAAACAAACCACTCTTTCTCAACACTCACATGAAACATCCATCT
TGTAAATTCCTCAACCACTCCTCTAAAGGAATTCGCAACCTCCAAAGCTG
ACTTCTCAGAAATCTCCAATCCCGACAACTTCGGTGGTTCTCTATATAAA
TATAGAAAGACCAATTATGTAGTAACTAATTAAATAAATAAATAAATAAA
AGGAAATATATAAATAATAAAAAGATGACTAATTAAATAAATAAAAGGAA
ATATATAAAAAAGACGACTAATTAATCAAAAGGGTGATCAAAATTTATAT
CTTATGTATATCACGAGCTACTAGCTACGGATCGTACTTGCCAAGAAGTC
TCATAATGTTTCCAGAGAGAAAGGTGAAAGAAACAATGGACATGGCAAGC
CACGAAGCCACAGTGAGGAAGTAAAATGATAGACCTC