CN186444

Overview
NameCN186444
Unique NameCN186444
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12567 contig Csv1_Contig12567:820..1607. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186444 vs. ExPASy Swiss-Prot
Match: THI4_CITSI (Thiazole biosynthetic enzyme, chloroplastic OS=Citrus sinensis GN=THI1 PE=2 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 6.499e-66
Identity = 127/127 (100.00%), Postives = 127/127 (100.00%), Query Frame = -3
Query:  405 MEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD 785
            MEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD
Sbjct:  229 MEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD 355          
BLAST of CN186444 vs. ExPASy Swiss-Prot
Match: THI4_ALNGL (Thiazole biosynthetic enzyme, chloroplastic OS=Alnus glutinosa GN=THI4 PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.402e-60
Identity = 116/127 (91.34%), Postives = 122/127 (96.06%), Query Frame = -3
Query:  405 MEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD 785
            MEAKVVVSSCGHDGPFGATGVK L+SIGMI+ VPGMKALDMN AEDAIVRLTRE+VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG PNALDG+YVGG+HPELILAAADSAE AD
Sbjct:  225 MEAKVVVSSCGHDGPFGATGVKSLRSIGMIDTVPGMKALDMNVAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGLPNALDGSYVGGIHPELILAAADSAEIAD 351          
BLAST of CN186444 vs. ExPASy Swiss-Prot
Match: THI4_ARATH (Thiazole biosynthetic enzyme, chloroplastic OS=Arabidopsis thaliana GN=THI1 PE=1 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 3.819e-58
Identity = 112/127 (88.19%), Postives = 119/127 (93.70%), Query Frame = -3
Query:  405 MEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAADSAETAD 785
            MEAK+VVSSCGHDGPFGATGVKRLKSIGMI+ VPGMKALDMN+AEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKA  LALK+LG PNA+DGT VG + PEL+LAAADSAET D
Sbjct:  222 MEAKIVVSSCGHDGPFGATGVKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAGQLALKALGLPNAIDGTLVGNLSPELVLAAADSAETVD 348          
BLAST of CN186444 vs. ExPASy Swiss-Prot
Match: THI41_MAIZE (Thiazole biosynthetic enzyme 1-1, chloroplastic OS=Zea mays GN=THI1-1 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 7.713e-51
Identity = 101/121 (83.47%), Postives = 109/121 (90.08%), Query Frame = -3
Query:  423 MEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELILAAAD 785
            MEAKVVVSSCGHDGPFGATGVKRL+ IGMI  VPGMKALDMN+AED IVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG+PNA+DGT    +  EL++A  D
Sbjct:  228 MEAKVVVSSCGHDGPFGATGVKRLQDIGMISAVPGMKALDMNTAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGTMSPPLREELMIAYKD 348          
BLAST of CN186444 vs. ExPASy Swiss-Prot
Match: THI42_MAIZE (Thiazole biosynthetic enzyme 1-2, chloroplastic OS=Zea mays GN=THI1-2 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.114e-49
Identity = 102/125 (81.60%), Postives = 111/125 (88.80%), Query Frame = -3
Query:  423 MEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHP----ELILAAAD 785
            MEAKVVVSSCGHDGPFGATGVKRL+ IGMI  VPGMKALDMN+AED IVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG+PNA+DGT +  V P    E ++A+ D
Sbjct:  225 MEAKVVVSSCGHDGPFGATGVKRLQDIGMISAVPGMKALDMNAAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGT-IPEVSPALREEFVIASKD 348          
BLAST of CN186444 vs. ExPASy Swiss-Prot
Match: THI4_FUSSH (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium solani subsp. phaseoli GN=STI35 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.669e-27
Identity = 61/95 (64.21%), Postives = 77/95 (81.05%), Query Frame = -3
Query:  501 MEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 785
            + A +V+S+ GHD P GA  VKRL S+G IE++ GM+ LDMN AEDAIV+ TRE+VPG+IV GME++E+DGA RMGPTFGAM++SG KAA  ALK
Sbjct:  219 INAPLVISTTGHDAPMGAFCVKRLVSMGRIEKLGGMRGLDMNVAEDAIVKGTREIVPGLIVGGMELSEVDGANRMGPTFGAMVLSGLKAAEEALK 313          
BLAST of CN186444 vs. ExPASy Swiss-Prot
Match: THI4_ASPOR (Thiazole biosynthetic enzyme, mitochondrial OS=Aspergillus oryzae GN=thiA PE=3 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 7.766e-27
Identity = 59/95 (62.11%), Postives = 76/95 (80.00%), Query Frame = -3
Query:  501 MEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 785
            + A V++S+ GHDGPFGA   KRL S+G ++++ GM+ LDMNSAEDAIV+ TREV  G+I+ GME++EIDG  RMGPTFGAM++SG KAA  ALK
Sbjct:  222 INAPVIISTTGHDGPFGAFCAKRLVSMGSVDKLGGMRGLDMNSAEDAIVKNTREVTKGLIIGGMELSEIDGFNRMGPTFGAMVLSGVKAAEEALK 316          
BLAST of CN186444 vs. ExPASy Swiss-Prot
Match: THI4_FUSOX (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium oxysporum GN=STI35 PE=2 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 1.014e-26
Identity = 60/95 (63.16%), Postives = 76/95 (80.00%), Query Frame = -3
Query:  501 MEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 785
            + A +++S+ GHDGP GA  VKRL S+  IE++ GM+ LDMN AEDAIV+ TRE+VPG+IV GME++E+DGA RMGPTFGAM +SG KAA  ALK
Sbjct:  215 INAPLIISTTGHDGPMGAFCVKRLVSMQRIEKLGGMRGLDMNLAEDAIVKGTREIVPGLIVGGMELSEVDGANRMGPTFGAMALSGLKAAEEALK 309          
BLAST of CN186444 vs. ExPASy Swiss-Prot
Match: THI4_UROFA (Thiazole biosynthetic enzyme, mitochondrial OS=Uromyces fabae GN=THI2 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.498e-25
Identity = 58/107 (54.21%), Postives = 77/107 (71.96%), Query Frame = -3
Query:  459 AKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVG 779
            A +V S  GHDGPFGA  VKR+ S G+ E +  M+ LDM  AED I   TRE++PG+IV GME++E DG+ RMGPTFGAM++SG++AA +AL+SL +    +G  VG
Sbjct:  229 APLVCSFAGHDGPFGAFCVKRVASAGLSEGLGDMRPLDMERAEDHIANKTREILPGLIVGGMELSEFDGSARMGPTFGAMLLSGKRAAEVALQSLDRVKIEEGEVVG 335          
BLAST of CN186444 vs. ExPASy Swiss-Prot
Match: THI2_SCHPO (Thiazole biosynthetic enzyme, mitochondrial OS=Schizosaccharomyces pombe GN=thi2 PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.498e-25
Identity = 61/108 (56.48%), Postives = 75/108 (69.44%), Query Frame = -3
Query:  462 MEAKVVVSSCGHDGPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYV 785
            + A +VVS+ GHDGPFGA  VKRL S  ++  +  M+ LDMN AED IV+ TREV PGMIV GME++E DGA RMGPTFG MM SG KAA  AL    +  A++  Y+
Sbjct:  221 INAHLVVSATGHDGPFGAFCVKRLASAQLVSNLHDMRPLDMNRAEDLIVKGTREVFPGMIVGGMELSEFDGANRMGPTFGGMMFSGIKAAQEALAIFDERKAVNEKYL 328          
The following BLAST results are available for this feature:
BLAST of CN186444 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
THI4_CITSI6.499e-66100.00Thiazole biosynthetic enzyme, chloroplastic OS=Cit... [more]
THI4_ALNGL1.402e-6091.34Thiazole biosynthetic enzyme, chloroplastic OS=Aln... [more]
THI4_ARATH3.819e-5888.19Thiazole biosynthetic enzyme, chloroplastic OS=Ara... [more]
THI41_MAIZE7.713e-5183.47Thiazole biosynthetic enzyme 1-1, chloroplastic OS... [more]
THI42_MAIZE1.114e-4981.60Thiazole biosynthetic enzyme 1-2, chloroplastic OS... [more]
THI4_FUSSH2.669e-2764.21Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_ASPOR7.766e-2762.11Thiazole biosynthetic enzyme, mitochondrial OS=Asp... [more]
THI4_FUSOX1.014e-2663.16Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_UROFA2.498e-2554.21Thiazole biosynthetic enzyme, mitochondrial OS=Uro... [more]
THI2_SCHPO2.498e-2556.48Thiazole biosynthetic enzyme, mitochondrial OS=Sch... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002O13_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002O13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186444 ID=CN186444; Name=CN186444; organism=Citrus sinensis; type=EST; length=787bp
TTTTTTTGCACAAAACGAGTAAGCTCAGATCTTCATCATTGATCTTACCC
CTTCAGCACTGTCCCATTGGCTGATGCCTCAAGTTATAAACATACAAAGC
AAAGAAAAGGGAACAGCCCAAGGGCAGTCTTACACATAATACAGATAACA
AGGACTAGATACGCAACTGCAAATTCACCCCCGAAAAACTCACAACGGTT
TCTTACAAGAGGAGAAAGAAATTAAAATTAAAGGTTGCATGATGGACCGG
AAACAAACACTTTATTCACAAAACCTCACAACATCATCTCATTATTCGCA
TCAACCATCCATCACAACCACCTAAATACAACTACTTTTTTGCCAGAGTT
TATTTGCATGCACACAGCTGATGAGTGATGATGCCTGTTATTATCAAATT
AACCATCAGCAGTCTCAGCAGAATCAGCTGCAGCTAAGATCAGCTCAGGG
TGAACACCTCCCACATATGTACCGTCTAATGCATTCGGCTGGCCCAGTGA
CTTCAACGCCAAATGCGCAGCCTTCTGCCCCGATATCATCATTGCTCCAA
ATGTTGGCCCCATTCTAGGAGCACCATCAATCTCGGCAACTTCCATGCCG
GTAACTATCATACCAGGCACAACCTCCCTGGTCAGCCTCACAATAGCATC
TTCTGCAGAGTTCATGTCCAGTGCCTTCATTCCAGGCACTTCCTCAATCA
TTCCGATACTCTTCAACCTCTTTACTCCAGTGGCCCCAAAAGGCCCATCA
TGGCCACAAGAGCTCACAACCACCTTCGCTTCCATTA
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