CX674999

Overview
NameCX674999
Unique NameCX674999
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length836
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674999 vs. ExPASy Swiss-Prot
Match: YI31B_YEAST (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-I PE=3 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 1.132e-26
Identity = 72/176 (40.91%), Postives = 101/176 (57.39%), Query Frame = -2
Query:    5 HKLAIKKGARAVRQKRRCFNQERYEAINGEVEKLLRAGFIREVNYPEWISNVVLVKKANGKWRMCVDFTGLNKACPKDSFPLPKIDQLVDSTAGHALLSFMDAFSGYNQIPMYEQDEESTAFITNKGLFCYRVMPFGLKNAGATYQRLVNKVFKPLIGKTMEVYVDDMITKSKIRE 532
            H + IK GAR  R +     ++  + IN  V+KLL   FI     P   S VVLV K +G +R+CVD+  LNKA   D FPLP+ID L+       + + +D  SGY+QIPM  +D   TAF+T  G + Y VMPFGL NA +T+ R +   F+ L  + + VY+DD++  S+  E
Sbjct:  612 HDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSP-CSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPE 784          
BLAST of CX674999 vs. ExPASy Swiss-Prot
Match: YG31B_YEAST (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 120.553 bits (301), Expect = 1.132e-26
Identity = 72/176 (40.91%), Postives = 101/176 (57.39%), Query Frame = -2
Query:    5 HKLAIKKGARAVRQKRRCFNQERYEAINGEVEKLLRAGFIREVNYPEWISNVVLVKKANGKWRMCVDFTGLNKACPKDSFPLPKIDQLVDSTAGHALLSFMDAFSGYNQIPMYEQDEESTAFITNKGLFCYRVMPFGLKNAGATYQRLVNKVFKPLIGKTMEVYVDDMITKSKIRE 532
            H + IK GAR  R +     ++  + IN  V+KLL   FI     P   S VVLV K +G +R+CVD+  LNKA   D FPLP+ID L+       + + +D  SGY+QIPM  +D   TAF+T  G + Y VMPFGL NA +T+ R +   F+ L  + + VY+DD++  S+  E
Sbjct:  586 HDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSP-CSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPE 758          
BLAST of CX674999 vs. ExPASy Swiss-Prot
Match: POL2_DROME (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=4 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.702e-20
Identity = 52/147 (35.37%), Postives = 84/147 (57.14%), Query Frame = -2
Query:   26 INGEVEKLLRAGFIREVNYPEWISNVVLVKKANG----KWRMCVDFTGLNKACPKDSFPLPKIDQLVDSTAGHALLSFMDAFSGYNQIPMYEQDEESTAFITNKGLFCYRVMPFGLKNAGATYQRLVNKVFKPLIGKTMEVYVDDMI 454
            +  +V+++L  G IRE N P      V+ KK +     K+R+ +D+  LN+    D +P+P +D+++         + +D   G++QI M E+    TAF T  G + Y  MPFGL+NA AT+QR +N + +PL+ K   VY+DD+I
Sbjct:  222 VENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDII 368          
BLAST of CX674999 vs. ExPASy Swiss-Prot
Match: POL4_DROME (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster GN=POL PE=4 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.901e-19
Identity = 71/265 (26.79%), Postives = 129/265 (48.68%), Query Frame = -2
Query:   26 KAMETGEAMQITSLDTRVENKNGRQEPVEDLETVSLGPENPGKTIRIGSRLKGEQ----KQELVKCLQAHADVFAWTHEDMPGIDPEVACHKLAIKKGARAVRQKRRCFNQERYEAINGEVEKLLRAGFIREVNYPEWISNVVLVKKANG------KWRMCVDFTGLNKACPKDSFPLPKIDQLVDSTAGHALLSFMDAFSGYNQIPMYEQDEESTAFITNKGLFCYRVMPFGLKNAGATYQRLVNKVFKPLIGKTMEVYVDDMI 790
            + + T ++ Q+ ++DT       + EP+ +   V    E+  KT+   S+LK       K +L      + D+FA   E  P     +   +L +K       +  R  + +  E I  +V+KL++   + E +  ++ S ++LV K +       KWR+ +D+  +NK    D FPLP+ID ++D        S +D  SG++QI + E   + T+F T+ G + +  +PFGLK A  ++QR++   F  +      +Y+DD+I
Sbjct:  225 RILNTTDSDQLVNMDTL------KYEPLSNYNVVQANSEHRNKTVL--SQLKKNFPELFKSQLENICSEYIDIFALESE--PITVNNLYKQQLRLKDDEPVYTKNYRSPHSQ-VEEIQAQVQKLIKDKIV-EPSVSQYNSPLLLVPKKSSPNSDKKKWRLVIDYRQINKKLLADKFPLPRIDDILDQLGRAKYFSCLDLMSGFHQIELDEGSRDITSFSTSNGSYRFTRLPFGLKIAPNSFQRMMTIAFSGIEPSQAFLYMDDLI 477          
BLAST of CX674999 vs. ExPASy Swiss-Prot
Match: POL5_DROME (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster GN=pol PE=4 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.095e-19
Identity = 57/153 (37.25%), Postives = 86/153 (56.21%), Query Frame = -2
Query:   14 INGEVEKLLRAGFIREVNYPE----WISNVVLVKKANGK--WRMCVDFTGLNKACPKDSFPLPKIDQLVDSTAGHALLSFMDAFSGYNQIPMYEQDEESTAFITNKGLFCYRVMPFGLKNAGATYQRLVNKVFKPLIGKTMEVYVDDMITKSK 454
            +  ++++LL+ G IR  N P     WI  V    K NG+  +RM VDF  LN     D++P+P I+  + S       + +D  SG++QI M E D   TAF T  G + +  +PFGLKNA A +QR+++ + +  IGK   VY+DD+I  S+
Sbjct:  139 VERQIDELLQDGIIRPSNSPYNSPIWI--VPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYPIPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSE 289          
BLAST of CX674999 vs. ExPASy Swiss-Prot
Match: POL3_DROME (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=4 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.654e-19
Identity = 64/212 (30.19%), Postives = 101/212 (47.64%), Query Frame = -2
Query:   17 LKGEQKQELVKCLQAHADVFAWTHEDMPGIDPEVACHKLAIKKGARAVRQKRRCFNQERYEAINGEVEKLLRAGFIREVNYPEWISNVVLVKKANG----KWRMCVDFTGLNKACPKDSFPLPKIDQLVDSTAGHALLSFMDAFSGYNQIPMYEQDEESTAFITNKGLFCYRVMPFGLKNAGATYQRLVNKVFKPLIGKTMEVYVDDMITKS 640
            L  E+KQ L   LQ + D+    HE           H +  K         +  + Q   + +  +++ +L  G IR  N P      V+ KK +     K+R+ +D+  LN+    D  P+P +D+++         + +D   G++QI M  +    TAF T  G + Y  MPFGLKNA AT+QR +N + +PL+ K   VY+DD+I  S
Sbjct:  165 LNNEEKQRLCALLQKYHDI--QYHEGDKLTFTNQTKHTINTKHNLPLY--SKYSYPQAYEQEVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFS 372          
BLAST of CX674999 vs. ExPASy Swiss-Prot
Match: POLY_DROME (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster GN=pol PE=4 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.936e-18
Identity = 54/152 (35.53%), Postives = 83/152 (54.61%), Query Frame = -2
Query:   14 INGEVEKLLRAGFIREVNYPEWISNVVLVKKA-----NGKWRMCVDFTGLNKACPKDSFPLPKIDQLVDSTAGHALLSFMDAFSGYNQIPMYEQDEESTAFITNKGLFCYRVMPFGLKNAGATYQRLVNKVFKPLIGKTMEVYVDDMITKSK 454
            +N EV++LL+ G IR    P      V+ KK      N   R+ +DF  LN+    D +P+P I  ++ +       + +D  SGY+QI + E D E T+F  N G + +  +PFGL+NA + +QR ++ V +  IGK   VYVDD+I  S+
Sbjct:  197 VNNEVKQLLKDGIIRPSRSPYNSPTWVVDKKGTDAFGNPNKRLVIDFRKLNEKTIPDRYPMPSIPMILANLGKAKFFTTLDLKSGYHQIYLAEHDREKTSFSVNGGKYEFCRLPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSE 348          
BLAST of CX674999 vs. ExPASy Swiss-Prot
Match: RRPO_OENBE (RNA-directed DNA polymerase homolog OS=Oenothera bertiana PE=4 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.091e-16
Identity = 42/107 (39.25%), Postives = 63/107 (58.88%), Query Frame = -2
Query:   26 RMCVDFTGLNKACPKDSFPLPKIDQLVDSTAGHALLSFMDAFSGYNQIPMYEQDEESTAFITNKGLFCYRVMPFGLKNAGATYQRLVNKVFKPLIGKTMEVYVDDMI 346
            RMC+D+  L K   K+ +P+P++D L D  A     + +D  SGY Q+ + + DE  T  +T  G F +RVMPFGL NA AT+  L+N V    +   + VY+DD++
Sbjct:    7 RMCIDYRALTKVTIKNKYPIPRVDDLFDRLAQATWFTKLDLRSGYWQVRIAKGDEPKTTCVTRYGSFEFRVMPFGLTNALATFCNLMNNVLYEYLDHFVVVYLDDLV 113          
BLAST of CX674999 vs. ExPASy Swiss-Prot
Match: RTF21_SCHPO (Retrotransposable element Tf2 155 kDa protein type 1 OS=Schizosaccharomyces pombe GN=Tf2-1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.037e-16
Identity = 50/151 (33.11%), Postives = 80/151 (52.98%), Query Frame = -2
Query:   14 RYEAINGEVEKLLRAGFIREVNYPEWISNVVLVKKANGKWRMCVDFTGLNKACPKDSFPLPKIDQLVDSTAGHALLSFMDAFSGYNQIPMYEQDEESTAFITNKGLFCYRVMPFGLKNAGATYQRLVNKVFKPLIGKTMEVYVDDMITKSK 466
            + +A+N E+ + L++G IRE         V+ V K  G  RM VD+  LNK    + +PLP I+QL+    G  + + +D  S Y+ I + + DE   AF   +G+F Y VMP+G+  A A +Q  +N +        +  Y+DD++  SK
Sbjct:  424 KMQAMNDEINQGLKSGIIRESKAIN-ACPVMFVPKKEGTLRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSK 573          
BLAST of CX674999 vs. ExPASy Swiss-Prot
Match: YRD6_CAEEL (Uncharacterized protein K02A2.6 OS=Caenorhabditis elegans GN=K02A2.6 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.175e-15
Identity = 53/156 (33.97%), Postives = 87/156 (55.77%), Query Frame = -2
Query:    5 EAINGEVEKLLRAGFIREVNYPEWISNVVLVKK-ANGKWRMCVDF--TGLNKACPKDSFPLPKIDQLVDSTAGHALLSFMDAFSGYNQIPMYEQDEESTAFITNKGLFCYRVMPFGLKNAGATYQRLVNKVFKPLIGKTMEVYVDD-MITKSKIRE 460
            EA+  E+ +L   G I  + Y +W + +V++KK   GK R+C DF  +GLN A   +  PLP  + +     G  + S +D    Y Q+ + E+ ++     T++G+F Y  M FGLK A A++Q++++K+   L G  + VY DD +I+ S I E
Sbjct:  454 EAVETELNRLQEMGVIVPITYAKWAAPIVVIKKKGTGKIRVCADFKCSGLNAALKDEFHPLPTSEDIFSRLKG-TVYSQIDLKDAYLQVELDEEAQKLAVINTHRGIFKYLRMTFGLKPAPASFQKIMDKMVSGLTG--VAVYWDDIIISASSIEE 606          
The following BLAST results are available for this feature:
BLAST of CX674999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
YI31B_YEAST1.132e-2640.91Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomy... [more]
YG31B_YEAST1.132e-2640.91Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomy... [more]
POL2_DROME2.702e-2035.37Retrovirus-related Pol polyprotein from transposon... [more]
POL4_DROME3.901e-1926.79Retrovirus-related Pol polyprotein from transposon... [more]
POL5_DROME5.095e-1937.25Retrovirus-related Pol polyprotein from transposon... [more]
POL3_DROME6.654e-1930.19Retrovirus-related Pol polyprotein from transposon... [more]
POLY_DROME1.936e-1835.53Retrovirus-related Pol polyprotein from transposon... [more]
RRPO_OENBE3.091e-1639.25RNA-directed DNA polymerase homolog OS=Oenothera b... [more]
RTF21_SCHPO4.037e-1633.11Retrotransposable element Tf2 155 kDa protein type... [more]
YRD6_CAEEL1.175e-1533.97Uncharacterized protein K02A2.6 OS=Caenorhabditis ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_59A07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-59A07-A13-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674999 ID=CX674999; Name=CX674999; organism=Citrus sinensis; type=EST; length=836bp
TTCCTTCCCGTATTTTGGACTTGGTGATCATGTCATCCACGTACACCTCC
ATGGTTTTCCCAATCAACGGCTTAAAGACTTTGTTCACCAGCCTCTGATA
GGTGGCCCCAGCATTTTTGAGACCAAATGGCATTACCCTATAACAGAACA
AACCCTTGTTAGTGATGAAAGCCGTGCTCTCCTCGTCCTGCTCGTACATG
GGGATCTGGTTGTATCCCGAGAACGCGTCCATGAAGCTAAGCAGAGCGTG
TCCAGCCGTTGAATCTACTAGCTGATCGATCTTTGGTAAAGGGAAGCTGT
CCTTTGGGCACGCCTTATTGAGGCCTGTGAAATCCACACACATCCTCCAC
TTGCCATTCGCTTTCTTTACCAACACCACATTCGATATCCATTCAGGGTA
ATTGACTTCCCGAATGAACCCTGCTCTCAAGAGCTTCTCCACCTCGCCAT
TTATAGCCTCATACCTCTCCTGGTTGAAGCACCTCCTCTTCTGCCTTACT
GCCCGAGCACCTTTCTTTATTGCCAGCTTATGACATGCTACCTCAGGGTC
AATCCCTGGCATGTCTTCATGTGTCCAAGCAAACACATCTGCATGAGCCT
GTAAGCATTTCACCAACTCCTGCTTTTGCTCTCCCTTAAGTCTTGACCCG
ATTCTGATTGTCTTTCCCGGATTCTCTGGTCCCAGGCTTACAGTTTCCAG
ATCCTCTACAGGTTCTTGTCTGCCATTCTTGTTTTCCACTCGGGTATCGA
GGGATGTTATCTGCATTGCTTCCCCTGTTTCCATCGCTTTTCACTTGCTT
TACTCCCCTTCTTGCTATCAACAGAAGCTTTTTGAT
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