CN186433 | Citrus Genome Database

Overview


Name	CN186433
Unique Name	CN186433
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	769

Libraries


Library Name	Type
Washington Navel Orange Stored Fruit Pulp cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

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BLAST of CN186433 vs. ExPASy Swiss-Prot
Match: TCPE_ARATH (T-complex protein 1 subunit epsilon OS=Arabidopsis thaliana GN=At1g24510 PE=2 SV=1)

HSP 1 Score: 380.178 bits (975), Expect = 6.937e-105
Identity = 183/202 (90.59%), Postives = 197/202 (97.52%), Query Frame = 1

Query:    7 AVLAVADLERKHVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGRIM 612
            AVLAVADLER+ VNLDLIKVEGKVGG+LEDTELIYGI +DKDMSHPQMPK+IE+A IAILTCPFEPPKPKTKHKVDIDTVEKF+TLR+QEQ+YFD+MVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAG+VREKSFGTT++RMLYIEHCANS+AVT+FIRGG  M
Sbjct:  188 AVLAVADLERRDVNLDLIKVEGKVGGKLEDTELIYGILIDKDMSHPQMPKQIEDAHIAILTCPFEPPKPKTKHKVDIDTVEKFETLRKQEQQYFDEMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGVVREKSFGTTKERMLYIEHCANSKAVTVFIRGGNKM 389

[Close]

BLAST of CN186433 vs. ExPASy Swiss-Prot
Match: TCPE2_AVESA (T-complex protein 1 subunit epsilon OS=Avena sativa PE=2 SV=1)

HSP 1 Score: 370.933 bits (951), Expect = 4.209e-102
Identity = 184/202 (91.09%), Postives = 191/202 (94.55%), Query Frame = 1

Query:    7 AVLAVADLERKHVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGRIM 612
            AVLAVADLERK VNLDLIKVEGKVGG+LEDTEL+ GI VDKDMSHPQMPKRIE+A IAILTCPFEPPKPKTKHKVDIDTVEKFQTLR QEQKYFD+MVQKCKDVGATLVICQWGFDDEANHLLM R LPAVRWVGGVELELIAIATGGRIVPRFQEL+ EKLGKAGLVREKSFGTT+DRMLYIE CANS+AVTIFIRGG  M
Sbjct:  188 AVLAVADLERKDVNLDLIKVEGKVGGKLEDTELVQGIIVDKDMSHPQMPKRIEDAHIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRGQEQKYFDEMVQKCKDVGATLVICQWGFDDEANHLLMQRELPAVRWVGGVELELIAIATGGRIVPRFQELSTEKLGKAGLVREKSFGTTKDRMLYIEKCANSKAVTIFIRGGNKM 389

[Close]

BLAST of CN186433 vs. ExPASy Swiss-Prot
Match: TCPE1_AVESA (T-complex protein 1 subunit epsilon OS=Avena sativa PE=2 SV=1)

HSP 1 Score: 367.851 bits (943), Expect = 3.563e-101
Identity = 183/202 (90.59%), Postives = 190/202 (94.06%), Query Frame = 1

Query:    7 AVLAVADLERKHVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGRIM 612
            AVLAVADLERK VNLDLIKVEGKVGG+LEDTEL+ GI VDKDMSHPQMPKRI +A IAILTCPFEPPKPKTKHKVDIDTVEKFQTLR QEQKYFD+MVQKCKDVGATLVICQWGFDDEANHLLM R LPAVRWVGGVELELIAIATGGRIVPRFQEL+ EKLGKAGLVREKSFGTT+DRMLYIE CANS+AVTIFIRGG  M
Sbjct:  188 AVLAVADLERKDVNLDLIKVEGKVGGKLEDTELVEGIIVDKDMSHPQMPKRIYDAHIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRGQEQKYFDEMVQKCKDVGATLVICQWGFDDEANHLLMQRELPAVRWVGGVELELIAIATGGRIVPRFQELSTEKLGKAGLVREKSFGTTKDRMLYIEKCANSKAVTIFIRGGNKM 389

[Close]

BLAST of CN186433 vs. ExPASy Swiss-Prot
Match: TCPE_MACFA (T-complex protein 1 subunit epsilon OS=Macaca fascicularis GN=CCT5 PE=2 SV=1)

HSP 1 Score: 308.145 bits (788), Expect = 3.350e-83
Identity = 147/202 (72.77%), Postives = 175/202 (86.63%), Query Frame = 1

Query:    7 AVLAVADLERKHVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGRIM 612
            AVL VAD+ER+ V+ +LIKVEGKVGGRLEDT+LI G+ VDKD SHPQMPK++E+AKIAILTCPFEPPKPKTKHK+D+ +VE ++ L++ E++ F++M+Q+ K+ GA L ICQWGFDDEANHLL+  NLPAVRWVGG E+ELIAIATGGRIVPRF ELT EKLG AGLV+E SFGTT+D+ML IE C NSRAVTIFIRGG  M
Sbjct:  192 AVLTVADMERRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKKVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVQEISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKM 393

[Close]

BLAST of CN186433 vs. ExPASy Swiss-Prot
Match: TCPE_HUMAN (T-complex protein 1 subunit epsilon OS=Homo sapiens GN=CCT5 PE=1 SV=1)

HSP 1 Score: 308.145 bits (788), Expect = 3.350e-83
Identity = 147/202 (72.77%), Postives = 175/202 (86.63%), Query Frame = 1

Query:    7 AVLAVADLERKHVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGRIM 612
            AVL VAD+ER+ V+ +LIKVEGKVGGRLEDT+LI G+ VDKD SHPQMPK++E+AKIAILTCPFEPPKPKTKHK+D+ +VE ++ L++ E++ F++M+Q+ K+ GA L ICQWGFDDEANHLL+  NLPAVRWVGG E+ELIAIATGGRIVPRF ELT EKLG AGLV+E SFGTT+D+ML IE C NSRAVTIFIRGG  M
Sbjct:  192 AVLTVADMERRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKKVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVQEISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKM 393

[Close]

BLAST of CN186433 vs. ExPASy Swiss-Prot
Match: TCPE_PONAB (T-complex protein 1 subunit epsilon OS=Pongo abelii GN=CCT5 PE=2 SV=1)

HSP 1 Score: 306.605 bits (784), Expect = 9.747e-83
Identity = 146/202 (72.28%), Postives = 175/202 (86.63%), Query Frame = 1

Query:    7 AVLAVADLERKHVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGRIM 612
            AVL VAD+ER+ V+ +LIKVEGKVGGRLEDT+LI G+ VDKD SHP+MPK++E+AKIAILTCPFEPPKPKTKHK+D+ +VE ++ L++ E++ F++M+Q+ K+ GA L ICQWGFDDEANHLL+  NLPAVRWVGG E+ELIAIATGGRIVPRF ELT EKLG AGLV+E SFGTT+D+ML IE C NSRAVTIFIRGG  M
Sbjct:  192 AVLTVADMERRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPRMPKKVEDAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVQEISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKM 393

[Close]

BLAST of CN186433 vs. ExPASy Swiss-Prot
Match: TCPE_RAT (T-complex protein 1 subunit epsilon OS=Rattus norvegicus GN=Cct5 PE=1 SV=1)

HSP 1 Score: 301.982 bits (772), Expect = 2.401e-81
Identity = 145/202 (71.78%), Postives = 171/202 (84.65%), Query Frame = 1

Query:    7 AVLAVADLERKHVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGRIM 612
            AVL VAD+ER+ V+ +LIKVEGKVGGRLEDT+LI G+ VDKD SHPQMPK + NAKIAILTCPFEPPKPKTKHK+D+ +VE ++ L++ E++ F++M+ + K+ GA L ICQWGFDDEANHLL+   LPAVRWVGG E+ELIAIATGGRIVPRF ELT EKLG AG+VRE SFGTT+D+ML IE C NSRAVTIFIRGG  M
Sbjct:  192 AVLTVADMERRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKEVLNAKIAILTCPFEPPKPKTKHKLDVTSVEDYKALQKYEKEKFEEMIAQIKETGANLAICQWGFDDEANHLLLQNGLPAVRWVGGPEIELIAIATGGRIVPRFSELTSEKLGFAGVVREISFGTTKDKMLVIEQCKNSRAVTIFIRGGNKM 393

[Close]

BLAST of CN186433 vs. ExPASy Swiss-Prot
Match: TCPE_SCHPO (T-complex protein 1 subunit epsilon OS=Schizosaccharomyces pombe GN=cct5 PE=2 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 6.986e-81
Identity = 141/202 (69.80%), Postives = 173/202 (85.64%), Query Frame = 1

Query:    7 AVLAVADLERKHVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGRIM 612
            AVL+VADL+RK V+ +LIKV+GKVGG ++DT+L+ G+ VDKDMSHPQMP RIENAKIAILTCPFEPPKPKTKHK+DI +V +F+ L+  E++ F +M++  KD GA LVICQWGFDDEANHLL+  NLPAVRWVGG E+ELIAIAT GRIVPRF++L+ +KLG AG+VRE SFGTT+D++L IE CANSRAVT+F+RG   M
Sbjct:  194 AVLSVADLQRKDVDFELIKVDGKVGGSVDDTKLVKGVVVDKDMSHPQMPHRIENAKIAILTCPFEPPKPKTKHKLDITSVSEFEALQAYEKEKFQEMIKHVKDAGANLVICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATNGRIVPRFEDLSSDKLGSAGIVREVSFGTTRDKILVIEKCANSRAVTVFVRGSNKM 395

[Close]

BLAST of CN186433 vs. ExPASy Swiss-Prot
Match: TCPE_MOUSE (T-complex protein 1 subunit epsilon OS=Mus musculus GN=Cct5 PE=1 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 1.556e-80
Identity = 143/202 (70.79%), Postives = 173/202 (85.64%), Query Frame = 1

Query:    7 AVLAVADLERKHVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGRIM 612
            AVL VAD+ER+ V+ +LIKVEGKVGGRLEDT+LI G+ VDKD SHPQMPK++ +AKIAILTCPFEPPKPKTKHK+D+ +VE ++ L++ E++ F++M+++ K+ GA L ICQWGFDDEANHLL+   LPAVRWVGG E+ELIAIATGGRIVPRF ELT EKLG AG+V+E SFGTT+D+ML IE C NSRAVTIFIRGG  M
Sbjct:  192 AVLTVADMERRDVDFELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKKVVDAKIAILTCPFEPPKPKTKHKLDVMSVEDYKALQKYEKEKFEEMIKQIKETGANLAICQWGFDDEANHLLLQNGLPAVRWVGGPEIELIAIATGGRIVPRFSELTSEKLGFAGVVQEISFGTTKDKMLVIEKCKNSRAVTIFIRGGNKM 393

[Close]

BLAST of CN186433 vs. ExPASy Swiss-Prot
Match: TCPE_CAEEL (T-complex protein 1 subunit epsilon OS=Caenorhabditis elegans GN=cct-5 PE=1 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.747e-77
Identity = 137/202 (67.82%), Postives = 166/202 (82.18%), Query Frame = 1

Query:    7 AVLAVADLERKHVNLDLIKVEGKVGGRLEDTELIYGITVDKDMSHPQMPKRIENAKIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRQQEQKYFDDMVQKCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTPEKLGKAGLVREKSFGTTQDRMLYIEHCANSRAVTIFIRGGRIM 612
            AVL+VAD+E K VN ++IK+EGKVGGRLEDT L+ GI +DK MSHPQMPK ++NAK+AILTCPFEPPKPKTKHK+DI + E F+ LR  E++ F+ M+++ K+ GATL ICQWGFDDEANHLL   +LPAVRWVGG E+EL+AIAT  RIVPRF EL+ EKLG AGLVRE +FG  +DRML IE C N++AVTIF+RGG  M
Sbjct:  191 AVLSVADIESKDVNFEMIKMEGKVGGRLEDTILVKGIVIDKTMSHPQMPKELKNAKVAILTCPFEPPKPKTKHKLDITSTEDFKALRDYERETFETMIRQVKESGATLAICQWGFDDEANHLLQANDLPAVRWVGGPEIELLAIATNARIVPRFSELSKEKLGTAGLVREITFGAAKDRMLSIEQCPNNKAVTIFVRGGNKM 392

The following BLAST results are available for this feature:

BLAST of CN186433 vs. ExPASy Swiss-Prot

BLAST of CN186433 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109


Match Name	E-value	Identity	Description
TCPE_ARATH	6.937e-105	90.59	T-complex protein 1 subunit epsilon OS=Arabidopsis...	[more]
TCPE2_AVESA	4.209e-102	91.09	T-complex protein 1 subunit epsilon OS=Avena sativ...	[more]
TCPE1_AVESA	3.563e-101	90.59	T-complex protein 1 subunit epsilon OS=Avena sativ...	[more]
TCPE_MACFA	3.350e-83	72.77	T-complex protein 1 subunit epsilon OS=Macaca fasc...	[more]
TCPE_HUMAN	3.350e-83	72.77	T-complex protein 1 subunit epsilon OS=Homo sapien...	[more]
TCPE_PONAB	9.747e-83	72.28	T-complex protein 1 subunit epsilon OS=Pongo abeli...	[more]
TCPE_RAT	2.401e-81	71.78	T-complex protein 1 subunit epsilon OS=Rattus norv...	[more]
TCPE_SCHPO	6.986e-81	69.80	T-complex protein 1 subunit epsilon OS=Schizosacch...	[more]
TCPE_MOUSE	1.556e-80	70.79	T-complex protein 1 subunit epsilon OS=Mus musculu...	[more]
TCPE_CAEEL	2.747e-77	67.82	T-complex protein 1 subunit epsilon OS=Caenorhabdi...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS05_0002O05_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002O05, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN186433 ID=CN186433; Name=CN186433; organism=Citrus sinensis; type=EST; length=769bp
CTTTAAGCGGTTCTTGCTGTGGCAGACTTAGAGAGGAAGCATGTCAATTT
AGATTTGATTAAAGTTGAGGGAAAAGTAGGGGGAAGGTTGGAGGACACTG
AGCTAATATATGGAATTACTGTTGACAAGGATATGAGCCACCCTCAGATG
CCAAAACGAATTGAAAATGCAAAAATTGCCATCTTGACCTGCCCCTTTGA
GCCCCCTAAGCCAAAAACAAAGCATAAGGTGGACATTGATACCGTGGAAA
AGTTCCAGACTTTACGTCAGCAAGAGCAAAAATACTTTGATGACATGGTT
CAAAAGTGCAAGGATGTTGGTGCTACCTTGGTCATCTGTCAATGGGGTTT
CGATGATGAGGCTAATCACTTATTAATGCACAGGAACCTGCCTGCTGTCC
GCTGGGTTGGTGGTGTAGAATTGGAGCTGATTGCCATAGCCACAGGTGGA
AGAATTGTTCCAAGGTTTCAGGAGTTGACACCAGAAAAACTTGGAAAGGC
TGGTTTGGTTCGAGAAAAGTCTTTTGGTACTACACAAGATAGAATGCTGT
ACATTGAACACTGTGCAAATTCTAGGGCTGTAACCATTTTTATCCGTGGA
GGTAGGATCATGTTCCCTTGTTATATTATTAAATTCAAAATAATCTTTGT
TGGTTTATTATGTAGGGAAATGTTATGGGCTAATGGAAGTGCTGAAGAAG
AAAATAAATAGCCTTGAGAGAAGGATCCTTAAGTATTTAGATGGTCTCAC
TCAGAGTGATGGTGTTTTA