CX674992
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX674992 vs. ExPASy Swiss-Prot
Match: AB2D_ARATH (ABC transporter D family member 2, chloroplastic OS=Arabidopsis thaliana GN=ABCC2 PE=1 SV=1) HSP 1 Score: 264.233 bits (674), Expect = 5.602e-70 Identity = 145/261 (55.56%), Postives = 179/261 (68.58%), Query Frame = 3 Query: 3 GALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRG-VFFLPQRPYMVLGSLRQQLIYPTWTEEVKLASDAAKSA-GLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGH 779 G++ + +QK L+IE+LTL+TPT+ TLV +LS + +K+HLL+MGPSGSGKTSLLRAMAGLW G+GKITFY+ + SD N RG V FLPQRPYMVLGSLRQQL+YPTW+ V+ + + G P L E KP+TDDL++ LE V LG+I R LD+ +EWSSVLSLGEQQRLAFARLLLS+P++ LLDESTSALDEANEA LY+QI++AGITYIS+GH Sbjct: 419 GSIKSQPNQKRLEIEELTLQTPTNGTTLVHNLSADVYDKDHLLIMGPSGSGKTSLLRAMAGLWRSGKGKITFYLDPEVDFTQEKSDTQE----------------NSGKRGDVLFLPQRPYMVLGSLRQQLLYPTWSATVEETTPGGSNIDGSPPLLIREDGNE-------KPTTDDLMRTLEKVCLGHIADRFGGLDSIHEWSSVLSLGEQQRLAFARLLLSQPKLALLDESTSALDEANEAFLYQQIQSAGITYISIGH 656
BLAST of CX674992 vs. ExPASy Swiss-Prot
Match: Y182_SYNY3 (Uncharacterized ABC transporter ATP-binding protein sll0182 OS=Synechocystis sp. (strain PCC 6803) GN=sll0182 PE=3 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 3.916e-39 Identity = 101/246 (41.06%), Postives = 130/246 (52.85%), Query Frame = 3 Query: 42 IEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKLASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGH 779 +E++TL P S LVRDLSL + HLL+MGPSGSGK+SLLRA+AGLW G+G I +R E + FLPQRPYM+LG+LR+QLIYP SAQ + + D L++ L V L + R LD+ WSSVLSLGEQQR+A AR+ +++P+ +LDE+TSALD NEA LY + G T+ISVGH Sbjct: 455 LENVTLSPPNSSRILVRDLSLAVAPGNHLLIMGPSGSGKSSLLRAIAGLWDSGQGTI-----ERPEL-----------------------------ADLLFLPQRPYMILGTLREQLIYP-----------------------SAQSIAD---------DDFLLETLNKVNLPDLAERFGGLDSLENWSSVLSLGEQQRIALARVFINQPRYAILDEATSALDVNNEAELYHALTDLGTTFISVGH 634
BLAST of CX674992 vs. ExPASy Swiss-Prot
Match: ABCD4_HUMAN (ATP-binding cassette sub-family D member 4 OS=Homo sapiens GN=ABCD4 PE=2 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 5.305e-28 Identity = 81/248 (32.66%), Postives = 120/248 (48.39%), Query Frame = 3 Query: 42 IEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKLASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWS--SVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGH 779 +E +++ P+S L++DLSL I+E + LL+ G +G+GKTSLLR + GLW+ RG + + GV FLPQ+P+ G+LR+Q+IYP L+ V S + +++ LE L ++ R LD +W+ VLS GE QRL+FARL +P+ +LDE+TSAL E E+ LY + G+T+ISVGH Sbjct: 389 LERVSISAPSSDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQMLT-------------------------------DFGPHGVLFLPQKPFFTDGTLREQVIYP---------------------------LKEVYPDSGSADDERILRFLELAGLSNLVARTEGLDQQVDWNWYDVLSPGEMQRLSFARLFYLQPKYAVLDEATSALTEEVESELYRIGQQLGMTFISVGH 578
BLAST of CX674992 vs. ExPASy Swiss-Prot
Match: ABCD4_MOUSE (ATP-binding cassette sub-family D member 4 OS=Mus musculus GN=Abcd4 PE=2 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 2.016e-27 Identity = 82/261 (31.42%), Postives = 123/261 (47.13%), Query Frame = 3 Query: 3 GALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKLASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWS--SVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGH 779 G + E S ++ +++ P+S L++DLSL I E + LL+ G +G+GKTSLLR + GLW + M G + + GV FLPQ+P+ G+LR+Q+IYP L+ + S + +++ LE L ++ R LD +W+ VLS GE QRL+FARL +P+ +LDE+TSAL E E+ LY + G+T+ISVGH Sbjct: 376 GCPTTEPSDTAFLLDRVSILAPSSDKPLIKDLSLKICEGQSLLITGNTGTGKTSLLRVLGGLW-------------------------------EGMKGSVQMLADFGPHGVLFLPQKPFFTDGTLREQVIYP---------------------------LKEIYPDSGSADDERIVRFLELAGLSSLVARTGGLDQQVDWNWYDVLSPGEMQRLSFARLFYLQPKYAVLDEATSALTEEAESELYRIGQQLGMTFISVGH 578
BLAST of CX674992 vs. ExPASy Swiss-Prot
Match: AB1D_ARATH (ABC transporter D family member 1 OS=Arabidopsis thaliana GN=ABCC1 PE=1 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 5.865e-27 Identity = 88/253 (34.78%), Postives = 122/253 (48.22%), Query Frame = 3 Query: 24 SQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKLASDAAKSAGLVPFLTSAQKLENVGRKSSKPST--DDLIKA-LEDVKLGYILPR-LNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYIS 770 SQ LL ++ + TP K + LS I + LLV GP+GSGKTS+ R + +W G++T +D E+ S N G+FF+PQRPY LG+LR Q+IYP EE + A KL G S++ + D +K LE+V+L Y+L R + D T W +LSLGEQQRL ARL +P+ +LDE T+A E LY G+T+I+ Sbjct: 1093 SQDLLSFSEVDIITPAQKL-MASKLSCEIVSGKSLLVTGPNGSGKTSVFRVLRDIWPTVCGRLT------------KPSLDIKELGSGN--------------GMFFVPQRPYTCLGTLRDQIIYPLSKEEAE---------------KRAAKLYTSGESSTEAGSILDSHLKTILENVRLVYLLERDVGGWDATTNWEDILSLGEQQRLGMARLFFHRPKFGVLDECTNATSVDVEEQLYRVARDMGVTFIT 1303 HSP 2 Score: 112.849 bits (281), Expect = 2.086e-24 Identity = 80/248 (32.26%), Postives = 118/248 (47.58%), Query Frame = 3 Query: 36 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKLASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGH 779 ++ D+ + TPT LV DL+L + + +LL+ GP+GSGK+SL R + GLW G I VK +D + + +F++PQRPYM +G+LR QLIYP LTS Q+ E + + +++ L++V L Y+L R + W LSLGEQQRL ARL KP+ +LDE TSA+ E ++ A G + I++ H Sbjct: 448 VEFSDVKVVTPTGNV-LVEDLTLRVEQGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI---VKPGVGSDLN--------------------------KEIFYVPQRPYMAVGTLRDQLIYP---------------------LTSGQESELL-------TEIGMVELLKNVDLEYLLDRYQP-EKEVNWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFAAKVRAMGTSCITISH 636
BLAST of CX674992 vs. ExPASy Swiss-Prot
Match: ABCD3_MOUSE (ATP-binding cassette sub-family D member 3 OS=Mus musculus GN=Abcd3 PE=1 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 1.106e-25 Identity = 78/254 (30.71%), Postives = 117/254 (46.06%), Query Frame = 3 Query: 24 SQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRG-VFFLPQRPYMVLGSLRQQLIYPTWTEEVKLASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKA-LEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGH 779 + ++ + + L TP L++DLS + H+L+ GP+G GK+SL R + LW G++T + RG +F++PQRPYM LG+LR Q+IYP E+ K + +D ++K L++V+LG+IL R D+ +W VLS GE+QR+A ARL KPQ +LDE TSA+ E ++Y GIT +V H Sbjct: 436 TDNIIKFDHVPLATPNGDI-LIQDLSFEVRSGNHVLICGPNGRGKSSLFRVLGELWPLFGGRLT-----------------------------------KPERGKLFYVPQRPYMTLGTLRDQVIYPDGKEDQK----------------------------KRGISDQVLKEYLDNVQLGHILEREGGWDSVQDWMDVLSGGEKQRMAMARLFYHKPQFAILDECTSAVSVDVEDYIYSHCRKVGITLFTVSH 625
BLAST of CX674992 vs. ExPASy Swiss-Prot
Match: ABCD3_HUMAN (ATP-binding cassette sub-family D member 3 OS=Homo sapiens GN=ABCD3 PE=1 SV=1) HSP 1 Score: 114.775 bits (286), Expect = 5.490e-25 Identity = 77/255 (30.20%), Postives = 116/255 (45.49%), Query Frame = 3 Query: 24 SQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRG-VFFLPQRPYMVLGSLRQQLIYPTWTEEVKLASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLI--KALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGH 779 + ++ + + L TP L+RDL+ + ++L+ GP+G GK+SL R + LW G++T + RG +F++PQRPYM LG+LR Q+IYP E+ K + DL+ + L++V+LG+IL R D+ +W VLS GE+QR+A ARL KPQ +LDE TSA+ E ++Y GIT +V H Sbjct: 436 ADNIIKFDHVPLATPNGDV-LIRDLNFEVRSGANVLICGPNGCGKSSLFRVLGELWPLFGGRLT-----------------------------------KPERGKLFYVPQRPYMTLGTLRDQVIYPDGREDQK-----------------------------RKGISDLVLKEYLDNVQLGHILEREGGWDSVQDWMDVLSGGEKQRMAMARLFYHKPQFAILDECTSAVSVDVEGYIYSHCRKVGITLFTVSH 625
BLAST of CX674992 vs. ExPASy Swiss-Prot
Match: ABCD3_RAT (ATP-binding cassette sub-family D member 3 OS=Rattus norvegicus GN=Abcd3 PE=1 SV=3) HSP 1 Score: 114.39 bits (285), Expect = 7.170e-25 Identity = 78/254 (30.71%), Postives = 116/254 (45.67%), Query Frame = 3 Query: 24 SQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRG-VFFLPQRPYMVLGSLRQQLIYPTWTEEVKLASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKA-LEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGH 779 + ++ + + L TP L++DLS + ++L+ GP+G GK+SL R + LW G +T + RG +F++PQRPYM LG+LR Q+IYP E+ K K +D ++K L++V+LG+IL R D+ +W VLS GE+QR+A ARL KPQ +LDE TSA+ E ++Y GIT +V H Sbjct: 436 ADNIIKFDHVPLATPNGDI-LIQDLSFEVRSGANVLICGPNGCGKSSLFRVLGELWPLFGGHLT-----------------------------------KPERGKLFYVPQRPYMTLGTLRDQVIYPDGKEDQK----------------------------KKGISDQVLKGYLDNVQLGHILEREGGWDSVQDWMDVLSGGEKQRMAMARLFYHKPQFAILDECTSAVSVDVEDYIYSHCRKVGITLFTVSH 625
BLAST of CX674992 vs. ExPASy Swiss-Prot
Match: ABCD1_DICDI (ABC transporter D family member 1 OS=Dictyostelium discoideum GN=abcD1 PE=3 SV=1) HSP 1 Score: 106.686 bits (265), Expect = 1.495e-22 Identity = 75/255 (29.41%), Postives = 118/255 (46.27%), Query Frame = 3 Query: 36 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKLASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSL-------DTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGH 779 + ++D+T TP L +S+ + +LL+MGPSGSGK+SL+R + GLW +G I DR E NG++ FFLPQ+PY++ G+L +Q++YP +K + + + + ++ Y+L R + D T+ W + LS GEQQ +A RL+ KP+ L+DESTS++ ++ E +Y + GIT ISVGH Sbjct: 492 ITLDDVTYFTPKGNQ-LYSKISINVKRGNNLLIMGPSGSGKSSLIRIINGLWPFFKGSI-----DRPE------------------NGDM-----------FFLPQQPYLIFGTLEEQILYP------------------------------FSKKQKRIPKSIMRELFQRFEIDYLLDRERFIKKSAQVNDLTHNWLNQLSPGEQQLIAIIRLIYHKPKFALMDESTSSIPQSLEERVYYVAKELGITIISVGH 681
BLAST of CX674992 vs. ExPASy Swiss-Prot
Match: ABCD3_DICDI (ABC transporter D family member 3 OS=Dictyostelium discoideum GN=abcD3 PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 3.330e-22 Identity = 72/248 (29.03%), Postives = 117/248 (47.18%), Query Frame = 3 Query: 36 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKLASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGH 779 + ++D+T TP L +S+ I + +LL+MGPSGSGK+SL+R + GLW +G I +R E + +FFLPQ+PY++ G+L +Q++YP ++ ++ + + E +KS++ + D T+ W + LS GEQQ +A RL+ KP+ L+DESTS++ ++ E +Y + GIT ISVGH Sbjct: 507 ITLDDVTYFTPKG-TQLYEKISICIKKGNNLLIMGPSGSGKSSLIRIINGLWPFFKGSI-----NRPENE-----------------------------DMFFLPQQPYLIFGTLEEQILYPFSKKQKRIPKSIMRELFQRFDIDYLLDRERFIKKSAQVN-----------------------DLTHNWLNQLSPGEQQLIAIIRLIYHKPKFALMDESTSSIPQSLEERVYSVAKELGITIISVGH 696 The following BLAST results are available for this feature:
BLAST of CX674992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 22
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Sequences
The
following sequences are available for this feature:
EST sequence >CX674992 ID=CX674992; Name=CX674992; organism=Citrus sinensis; type=EST; length=780bpback to top |