CX674992

Overview
NameCX674992
Unique NameCX674992
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length780
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5465 contig Csv1_Contig5465:1..780. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX674992 vs. ExPASy Swiss-Prot
Match: AB2D_ARATH (ABC transporter D family member 2, chloroplastic OS=Arabidopsis thaliana GN=ABCC2 PE=1 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 5.602e-70
Identity = 145/261 (55.56%), Postives = 179/261 (68.58%), Query Frame = 3
Query:    3 GALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRG-VFFLPQRPYMVLGSLRQQLIYPTWTEEVKLASDAAKSA-GLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGH 779
            G++  + +QK L+IE+LTL+TPT+  TLV +LS  + +K+HLL+MGPSGSGKTSLLRAMAGLW  G+GKITFY+    +     SD                   N   RG V FLPQRPYMVLGSLRQQL+YPTW+  V+  +    +  G  P L      E       KP+TDDL++ LE V LG+I  R   LD+ +EWSSVLSLGEQQRLAFARLLLS+P++ LLDESTSALDEANEA LY+QI++AGITYIS+GH
Sbjct:  419 GSIKSQPNQKRLEIEELTLQTPTNGTTLVHNLSADVYDKDHLLIMGPSGSGKTSLLRAMAGLWRSGKGKITFYLDPEVDFTQEKSDTQE----------------NSGKRGDVLFLPQRPYMVLGSLRQQLLYPTWSATVEETTPGGSNIDGSPPLLIREDGNE-------KPTTDDLMRTLEKVCLGHIADRFGGLDSIHEWSSVLSLGEQQRLAFARLLLSQPKLALLDESTSALDEANEAFLYQQIQSAGITYISIGH 656          
BLAST of CX674992 vs. ExPASy Swiss-Prot
Match: Y182_SYNY3 (Uncharacterized ABC transporter ATP-binding protein sll0182 OS=Synechocystis sp. (strain PCC 6803) GN=sll0182 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.916e-39
Identity = 101/246 (41.06%), Postives = 130/246 (52.85%), Query Frame = 3
Query:   42 IEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKLASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGH 779
            +E++TL  P S   LVRDLSL +    HLL+MGPSGSGK+SLLRA+AGLW  G+G I     +R E                                + FLPQRPYM+LG+LR+QLIYP                       SAQ + +          D L++ L  V L  +  R   LD+   WSSVLSLGEQQR+A AR+ +++P+  +LDE+TSALD  NEA LY  +   G T+ISVGH
Sbjct:  455 LENVTLSPPNSSRILVRDLSLAVAPGNHLLIMGPSGSGKSSLLRAIAGLWDSGQGTI-----ERPEL-----------------------------ADLLFLPQRPYMILGTLREQLIYP-----------------------SAQSIAD---------DDFLLETLNKVNLPDLAERFGGLDSLENWSSVLSLGEQQRIALARVFINQPRYAILDEATSALDVNNEAELYHALTDLGTTFISVGH 634          
BLAST of CX674992 vs. ExPASy Swiss-Prot
Match: ABCD4_HUMAN (ATP-binding cassette sub-family D member 4 OS=Homo sapiens GN=ABCD4 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.305e-28
Identity = 81/248 (32.66%), Postives = 120/248 (48.39%), Query Frame = 3
Query:   42 IEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKLASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWS--SVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGH 779
            +E +++  P+S   L++DLSL I+E + LL+ G +G+GKTSLLR + GLW+  RG +                                   +    GV FLPQ+P+   G+LR+Q+IYP                           L+ V   S     + +++ LE   L  ++ R   LD   +W+   VLS GE QRL+FARL   +P+  +LDE+TSAL E  E+ LY   +  G+T+ISVGH
Sbjct:  389 LERVSISAPSSDKPLIKDLSLKISEGQSLLITGNTGTGKTSLLRVLGGLWTSTRGSVQMLT-------------------------------DFGPHGVLFLPQKPFFTDGTLREQVIYP---------------------------LKEVYPDSGSADDERILRFLELAGLSNLVARTEGLDQQVDWNWYDVLSPGEMQRLSFARLFYLQPKYAVLDEATSALTEEVESELYRIGQQLGMTFISVGH 578          
BLAST of CX674992 vs. ExPASy Swiss-Prot
Match: ABCD4_MOUSE (ATP-binding cassette sub-family D member 4 OS=Mus musculus GN=Abcd4 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.016e-27
Identity = 82/261 (31.42%), Postives = 123/261 (47.13%), Query Frame = 3
Query:    3 GALSPEKSQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKLASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWS--SVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGH 779
            G  + E S     ++ +++  P+S   L++DLSL I E + LL+ G +G+GKTSLLR + GLW                               + M G +    +    GV FLPQ+P+   G+LR+Q+IYP                           L+ +   S     + +++ LE   L  ++ R   LD   +W+   VLS GE QRL+FARL   +P+  +LDE+TSAL E  E+ LY   +  G+T+ISVGH
Sbjct:  376 GCPTTEPSDTAFLLDRVSILAPSSDKPLIKDLSLKICEGQSLLITGNTGTGKTSLLRVLGGLW-------------------------------EGMKGSVQMLADFGPHGVLFLPQKPFFTDGTLREQVIYP---------------------------LKEIYPDSGSADDERIVRFLELAGLSSLVARTGGLDQQVDWNWYDVLSPGEMQRLSFARLFYLQPKYAVLDEATSALTEEAESELYRIGQQLGMTFISVGH 578          
BLAST of CX674992 vs. ExPASy Swiss-Prot
Match: AB1D_ARATH (ABC transporter D family member 1 OS=Arabidopsis thaliana GN=ABCC1 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.865e-27
Identity = 88/253 (34.78%), Postives = 122/253 (48.22%), Query Frame = 3
Query:   24 SQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKLASDAAKSAGLVPFLTSAQKLENVGRKSSKPST--DDLIKA-LEDVKLGYILPR-LNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYIS 770
            SQ LL   ++ + TP  K  +   LS  I   + LLV GP+GSGKTS+ R +  +W    G++T               +D  E+ S N              G+FF+PQRPY  LG+LR Q+IYP   EE +                 A KL   G  S++  +  D  +K  LE+V+L Y+L R +   D T  W  +LSLGEQQRL  ARL   +P+  +LDE T+A     E  LY      G+T+I+
Sbjct: 1093 SQDLLSFSEVDIITPAQKL-MASKLSCEIVSGKSLLVTGPNGSGKTSVFRVLRDIWPTVCGRLT------------KPSLDIKELGSGN--------------GMFFVPQRPYTCLGTLRDQIIYPLSKEEAE---------------KRAAKLYTSGESSTEAGSILDSHLKTILENVRLVYLLERDVGGWDATTNWEDILSLGEQQRLGMARLFFHRPKFGVLDECTNATSVDVEEQLYRVARDMGVTFIT 1303          

HSP 2 Score: 112.849 bits (281), Expect = 2.086e-24
Identity = 80/248 (32.26%), Postives = 118/248 (47.58%), Query Frame = 3
Query:   36 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKLASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGH 779
            ++  D+ + TPT    LV DL+L + +  +LL+ GP+GSGK+SL R + GLW    G I   VK    +D +                          + +F++PQRPYM +G+LR QLIYP                     LTS Q+ E +       +   +++ L++V L Y+L R    +    W   LSLGEQQRL  ARL   KP+  +LDE TSA+    E     ++ A G + I++ H
Sbjct:  448 VEFSDVKVVTPTGNV-LVEDLTLRVEQGSNLLITGPNGSGKSSLFRVLGGLWPLVSGHI---VKPGVGSDLN--------------------------KEIFYVPQRPYMAVGTLRDQLIYP---------------------LTSGQESELL-------TEIGMVELLKNVDLEYLLDRYQP-EKEVNWGDELSLGEQQRLGMARLFYHKPKFAILDECTSAVTTDMEERFAAKVRAMGTSCITISH 636          
BLAST of CX674992 vs. ExPASy Swiss-Prot
Match: ABCD3_MOUSE (ATP-binding cassette sub-family D member 3 OS=Mus musculus GN=Abcd3 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.106e-25
Identity = 78/254 (30.71%), Postives = 117/254 (46.06%), Query Frame = 3
Query:   24 SQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRG-VFFLPQRPYMVLGSLRQQLIYPTWTEEVKLASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKA-LEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGH 779
            +  ++  + + L TP     L++DLS  +    H+L+ GP+G GK+SL R +  LW    G++T                                   +  RG +F++PQRPYM LG+LR Q+IYP   E+ K                             +  +D ++K  L++V+LG+IL R    D+  +W  VLS GE+QR+A ARL   KPQ  +LDE TSA+    E ++Y      GIT  +V H
Sbjct:  436 TDNIIKFDHVPLATPNGDI-LIQDLSFEVRSGNHVLICGPNGRGKSSLFRVLGELWPLFGGRLT-----------------------------------KPERGKLFYVPQRPYMTLGTLRDQVIYPDGKEDQK----------------------------KRGISDQVLKEYLDNVQLGHILEREGGWDSVQDWMDVLSGGEKQRMAMARLFYHKPQFAILDECTSAVSVDVEDYIYSHCRKVGITLFTVSH 625          
BLAST of CX674992 vs. ExPASy Swiss-Prot
Match: ABCD3_HUMAN (ATP-binding cassette sub-family D member 3 OS=Homo sapiens GN=ABCD3 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.490e-25
Identity = 77/255 (30.20%), Postives = 116/255 (45.49%), Query Frame = 3
Query:   24 SQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRG-VFFLPQRPYMVLGSLRQQLIYPTWTEEVKLASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLI--KALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGH 779
            +  ++  + + L TP     L+RDL+  +    ++L+ GP+G GK+SL R +  LW    G++T                                   +  RG +F++PQRPYM LG+LR Q+IYP   E+ K                             +    DL+  + L++V+LG+IL R    D+  +W  VLS GE+QR+A ARL   KPQ  +LDE TSA+    E ++Y      GIT  +V H
Sbjct:  436 ADNIIKFDHVPLATPNGDV-LIRDLNFEVRSGANVLICGPNGCGKSSLFRVLGELWPLFGGRLT-----------------------------------KPERGKLFYVPQRPYMTLGTLRDQVIYPDGREDQK-----------------------------RKGISDLVLKEYLDNVQLGHILEREGGWDSVQDWMDVLSGGEKQRMAMARLFYHKPQFAILDECTSAVSVDVEGYIYSHCRKVGITLFTVSH 625          
BLAST of CX674992 vs. ExPASy Swiss-Prot
Match: ABCD3_RAT (ATP-binding cassette sub-family D member 3 OS=Rattus norvegicus GN=Abcd3 PE=1 SV=3)

HSP 1 Score: 114.39 bits (285), Expect = 7.170e-25
Identity = 78/254 (30.71%), Postives = 116/254 (45.67%), Query Frame = 3
Query:   24 SQKLLDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRG-VFFLPQRPYMVLGSLRQQLIYPTWTEEVKLASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKA-LEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGH 779
            +  ++  + + L TP     L++DLS  +    ++L+ GP+G GK+SL R +  LW    G +T                                   +  RG +F++PQRPYM LG+LR Q+IYP   E+ K                             K  +D ++K  L++V+LG+IL R    D+  +W  VLS GE+QR+A ARL   KPQ  +LDE TSA+    E ++Y      GIT  +V H
Sbjct:  436 ADNIIKFDHVPLATPNGDI-LIQDLSFEVRSGANVLICGPNGCGKSSLFRVLGELWPLFGGHLT-----------------------------------KPERGKLFYVPQRPYMTLGTLRDQVIYPDGKEDQK----------------------------KKGISDQVLKGYLDNVQLGHILEREGGWDSVQDWMDVLSGGEKQRMAMARLFYHKPQFAILDECTSAVSVDVEDYIYSHCRKVGITLFTVSH 625          
BLAST of CX674992 vs. ExPASy Swiss-Prot
Match: ABCD1_DICDI (ABC transporter D family member 1 OS=Dictyostelium discoideum GN=abcD1 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.495e-22
Identity = 75/255 (29.41%), Postives = 118/255 (46.27%), Query Frame = 3
Query:   36 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKLASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSL-------DTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGH 779
            + ++D+T  TP     L   +S+ +    +LL+MGPSGSGK+SL+R + GLW   +G I     DR E                  NG++           FFLPQ+PY++ G+L +Q++YP                                +K  +     + +  +  ++ Y+L R   +       D T+ W + LS GEQQ +A  RL+  KP+  L+DESTS++ ++ E  +Y   +  GIT ISVGH
Sbjct:  492 ITLDDVTYFTPKGNQ-LYSKISINVKRGNNLLIMGPSGSGKSSLIRIINGLWPFFKGSI-----DRPE------------------NGDM-----------FFLPQQPYLIFGTLEEQILYP------------------------------FSKKQKRIPKSIMRELFQRFEIDYLLDRERFIKKSAQVNDLTHNWLNQLSPGEQQLIAIIRLIYHKPKFALMDESTSSIPQSLEERVYYVAKELGITIISVGH 681          
BLAST of CX674992 vs. ExPASy Swiss-Prot
Match: ABCD3_DICDI (ABC transporter D family member 3 OS=Dictyostelium discoideum GN=abcD3 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 3.330e-22
Identity = 72/248 (29.03%), Postives = 117/248 (47.18%), Query Frame = 3
Query:   36 LDIEDLTLKTPTSKATLVRDLSLVINEKEHLLVMGPSGSGKTSLLRAMAGLWSDGRGKITFYVKDREETDAHTSDVDSLEVNSQNMNGELTRSMNRNSRGVFFLPQRPYMVLGSLRQQLIYPTWTEEVKLASDAAKSAGLVPFLTSAQKLENVGRKSSKPSTDDLIKALEDVKLGYILPRLNSLDTTYEWSSVLSLGEQQRLAFARLLLSKPQIVLLDESTSALDEANEAHLYEQIEAAGITYISVGH 779
            + ++D+T  TP     L   +S+ I +  +LL+MGPSGSGK+SL+R + GLW   +G I     +R E +                              +FFLPQ+PY++ G+L +Q++YP   ++ ++     +       +      E   +KS++ +                       D T+ W + LS GEQQ +A  RL+  KP+  L+DESTS++ ++ E  +Y   +  GIT ISVGH
Sbjct:  507 ITLDDVTYFTPKG-TQLYEKISICIKKGNNLLIMGPSGSGKSSLIRIINGLWPFFKGSI-----NRPENE-----------------------------DMFFLPQQPYLIFGTLEEQILYPFSKKQKRIPKSIMRELFQRFDIDYLLDRERFIKKSAQVN-----------------------DLTHNWLNQLSPGEQQLIAIIRLIYHKPKFALMDESTSSIPQSLEERVYSVAKELGITIISVGH 696          
The following BLAST results are available for this feature:
BLAST of CX674992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
AB2D_ARATH5.602e-7055.56ABC transporter D family member 2, chloroplastic O... [more]
Y182_SYNY33.916e-3941.06Uncharacterized ABC transporter ATP-binding protei... [more]
ABCD4_HUMAN5.305e-2832.66ATP-binding cassette sub-family D member 4 OS=Homo... [more]
ABCD4_MOUSE2.016e-2731.42ATP-binding cassette sub-family D member 4 OS=Mus ... [more]
AB1D_ARATH5.865e-2734.78ABC transporter D family member 1 OS=Arabidopsis t... [more]
ABCD3_MOUSE1.106e-2530.71ATP-binding cassette sub-family D member 3 OS=Mus ... [more]
ABCD3_HUMAN5.490e-2530.20ATP-binding cassette sub-family D member 3 OS=Homo... [more]
ABCD3_RAT7.170e-2530.71ATP-binding cassette sub-family D member 3 OS=Ratt... [more]
ABCD1_DICDI1.495e-2229.41ABC transporter D family member 1 OS=Dictyostelium... [more]
ABCD3_DICDI3.330e-2229.03ABC transporter D family member 3 OS=Dictyostelium... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS10_9H11_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-9H11-O21-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674992 ID=CX674992; Name=CX674992; organism=Citrus sinensis; type=EST; length=780bp
ATGGAGCCTTGTCTCCAGAAAAGAGTCAGAAATTACTGGACATCGAGGAT
TTGACATTGAAGACACCAACAAGTAAAGCCACATTGGTCAGGGACTTATC
ATTGGTGATCAATGAAAAAGAGCATCTGCTGGTAATGGGACCTAGTGGGA
GTGGTAAAACTTCTTTGTTAAGGGCTATGGCTGGTCTTTGGAGTGATGGA
AGAGGAAAAATTACATTCTATGTGAAAGACAGGGAAGAAACTGACGCACA
TACTTCAGATGTGGACTCTCTTGAAGTAAATTCTCAAAATATGAATGGGG
AGCTTACAAGATCCATGAATAGAAACTCAAGAGGAGTATTTTTTCTTCCT
CAGAGACCATATATGGTTTTAGGTAGTCTTCGTCAACAATTGATTTATCC
TACGTGGACTGAAGAAGTGAAACTGGCGTCTGATGCTGCGAAATCCGCTG
GTTTAGTGCCATTCTTGACATCAGCACAAAAATTGGAAAATGTGGGAAGA
AAGTCTAGCAAGCCCTCAACAGATGATCTAATTAAGGCTCTAGAGGATGT
CAAACTTGGCTATATCTTGCCTCGTCTCAATAGCTTGGACACAACATATG
AGTGGTCCAGTGTTCTGTCCCTTGGGGAGCAGCAGCGCCTTGCTTTTGCA
CGTTTGTTGCTTTCAAAACCACAGATAGTTCTATTGGATGAGTCTACCAG
TGCTTTAGACGAAGCCAACGAGGCTCATTTATATGAGCAAATTGAAGCAG
CAGGCATAACATATATTAGTGTCGGCCATC
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