CN186422

Overview
NameCN186422
Unique NameCN186422
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length714
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2539 contig Csv1_Contig2539:1..714. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186422 vs. ExPASy Swiss-Prot
Match: VPS2A_ARATH (Vacuolar protein sorting-associated protein 2 homolog 1 OS=Arabidopsis thaliana GN=VPS2.1 PE=2 SV=2)

HSP 1 Score: 189.119 bits (479), Expect = 1.965e-47
Identity = 99/121 (81.82%), Postives = 105/121 (86.78%), Query Frame = -3
Query:  155 VKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALHGDDXXXXXXELVNQVLDEIGIDINQELVNAPSSTVAAPAVKGKVAQAEATG-NDDGGIDSDLQARLDNLRR 514
            +KGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMV+EVMGDAIDDAL GD+      +LV+QVLDEIGIDINQELVNAPS  VA PA K KV QAEATG  D GGIDSDLQARLDNLR+
Sbjct:  104 MKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVSEVMGDAIDDALEGDEEEEETEDLVSQVLDEIGIDINQELVNAPSGAVAVPAAKNKVVQAEATGAEDSGGIDSDLQARLDNLRK 224          
BLAST of CN186422 vs. ExPASy Swiss-Prot
Match: CHM2A_DANRE (Charged multivesicular body protein 2a OS=Danio rerio GN=chmp2a PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.206e-24
Identity = 59/120 (49.17%), Postives = 81/120 (67.50%), Query Frame = -3
Query:  155 VKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALHGDDXXXXXXELVNQVLDEIGIDINQELVNAPSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLRR 514
            +KGVTKAM  MNRQ+ LP +QKIM EFERQ+E M+M  E+M DAIDDA+  +D       +V+QVLDE+G+ ++ EL N P++  +     GK A+ + T  D    D+DL+ RL+NLRR
Sbjct:  103 MKGVTKAMATMNRQLKLPQIQKIMMEFERQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDELGLTLSDELSNLPATGGSLSVAAGKKAEPQPTLAD---ADADLEERLNNLRR 219          
BLAST of CN186422 vs. ExPASy Swiss-Prot
Match: CHM2A_MOUSE (Charged multivesicular body protein 2a OS=Mus musculus GN=Chmp2a PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.799e-24
Identity = 61/120 (50.83%), Postives = 80/120 (66.67%), Query Frame = -3
Query:  155 VKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALHGDDXXXXXXELVNQVLDEIGIDINQELVNAPSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLRR 514
            +KGVTKAMG MNRQ+ LP +QKIM EFERQ E M+M  E+M DAIDDA+  ++       +V+QVLDE+G+ +  EL N P ST  + +V     +AEAT +     D+DL+ RL NLRR
Sbjct:  103 MKGVTKAMGTMNRQLKLPQIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELSNLP-STGGSLSVAAGGKKAEATASALADADADLEERLKNLRR 221          
BLAST of CN186422 vs. ExPASy Swiss-Prot
Match: CHM2A_HUMAN (Charged multivesicular body protein 2a OS=Homo sapiens GN=CHMP2A PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 8.880e-24
Identity = 62/121 (51.24%), Postives = 82/121 (67.77%), Query Frame = -3
Query:  155 VKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALHGDDXXXXXXELVNQVLDEIGIDINQELVNAPSSTVA-APAVKGKVAQAEATGNDDGGIDSDLQARLDNLRR 514
            +KGVTKAMG MNRQ+ LP +QKIM EFERQ E M+M  E+M DAIDDA+  ++       +V+QVLDE+G+ +  EL N PS+  + + A  GK A+A A+   D   D+DL+ RL NLRR
Sbjct:  103 MKGVTKAMGTMNRQLKLPQIQKIMMEFERQAEIMDMKEEMMNDAIDDAMGDEEDEEESDAVVSQVLDELGLSLTDELSNLPSTGGSLSVAAGGKKAEAAASALADA--DADLEERLKNLRR 221          
BLAST of CN186422 vs. ExPASy Swiss-Prot
Match: CHM2A_XENLA (Charged multivesicular body protein 2a OS=Xenopus laevis GN=chmp2a PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.518e-23
Identity = 58/120 (48.33%), Postives = 78/120 (65.00%), Query Frame = -3
Query:  155 VKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALHGDDXXXXXXELVNQVLDEIGIDINQELVNAPSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLRR 514
            +KGVTKAM  MNRQ+ LP +QKIM EFE+Q+E M+M  E+M DAIDDA+  +D       +V+QVLDE+G+ +  EL N PS+  +      K  +A A   D    D+DL+ RL+NLRR
Sbjct:  103 MKGVTKAMATMNRQLKLPQIQKIMMEFEKQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDELGLTLTDELSNLPSTGGSLSVAGAKKGEATAALAD---ADADLEERLNNLRR 219          
BLAST of CN186422 vs. ExPASy Swiss-Prot
Match: CHM2A_XENTR (Charged multivesicular body protein 2a OS=Xenopus tropicalis GN=chmp2a PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.282e-22
Identity = 61/123 (49.59%), Postives = 80/123 (65.04%), Query Frame = -3
Query:  155 VKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALHGDDXXXXXXELVNQVLDEIGIDINQELVNAPS---STVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLRR 514
            +KGVTKAM  MNRQ+ LP +QKIM EFE+Q+E M+M  E+M DAIDDA+  +D       +V+QVLDE+G+ +  EL N PS   S   A A KG+ + A A        D+DL+ RL+NLRR
Sbjct:  103 MKGVTKAMATMNRQLKLPQIQKIMMEFEKQSEIMDMKEEMMNDAIDDAMGDEDDEEESDAVVSQVLDELGLTLTDELSNLPSTGGSLSVAGAKKGEPSAALADA------DADLEERLNNLRR 219          
BLAST of CN186422 vs. ExPASy Swiss-Prot
Match: CHM2A_CHICK (Charged multivesicular body protein 2a OS=Gallus gallus GN=CHMP2A PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.364e-22
Identity = 57/120 (47.50%), Postives = 77/120 (64.17%), Query Frame = -3
Query:  155 VKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALHGDDXXXXXXELVNQVLDEIGIDINQELVNAPSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLRR 514
            +KGVTKAM  MNRQ+ LP +QKIM EFE+Q   M+M  E+M DAIDDA+  +D       +V+QVLDE+G+++  EL   P    +  A +G+ A+A A   D    D+DL+ RL NLRR
Sbjct:  103 MKGVTKAMATMNRQLKLPQIQKIMMEFEKQAGIMDMKEELMNDAIDDAMGDEDDEEESDAVVSQVLDELGLNLTDELATLPPPGGSLAAGEGRAAEAAAALAD---ADADLEERLKNLRR 219          
BLAST of CN186422 vs. ExPASy Swiss-Prot
Match: CM2A2_DICDI (Charged multivesicular body protein 2a homolog 2 OS=Dictyostelium discoideum GN=chmp2a2 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.467e-18
Identity = 48/94 (51.06%), Postives = 65/94 (69.15%), Query Frame = -3
Query:  233 VKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALHGDDXXXXXXELVNQVLDEIGIDINQELVNAPSSTVAAPAVKGKV 514
            +KGVTKAM  MNRQMNLP   KIM EFE+Q++KM+M  E+M D +D  +  D       E++NQVLDEIGID+  +LV+AP++   + A K +V
Sbjct:  102 MKGVTKAMITMNRQMNLPQFTKIMMEFEQQSDKMDMKEEMMNDTMDQVMEQDGEEEQSQEILNQVLDEIGIDLASQLVDAPTTVGTSVASKHQV 195          
BLAST of CN186422 vs. ExPASy Swiss-Prot
Match: VPS2C_ARATH (Vacuolar protein sorting-associated protein 2 homolog 3 OS=Arabidopsis thaliana GN=VPS2.3 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.767e-17
Identity = 51/119 (42.86%), Postives = 73/119 (61.34%), Query Frame = -3
Query:  158 VKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALHGDDXXXXXXELVNQVLDEIGIDINQELVNAPSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLR 514
            ++G TKAM  M++ M+     K+M+EF++Q+ +M+M TE+M D+IDDAL  D+      +L NQVLDEIGIDI  +L +AP         KGK+   +A      GID +L+ RL  LR
Sbjct:  102 MQGATKAMAAMSKNMDPAKQAKVMREFQKQSAQMDMTTEMMSDSIDDALDNDEAEDETEDLTNQVLDEIGIDIASQLSSAP---------KGKIGGKKAEDVGSSGID-ELEKRLAALR 210          
BLAST of CN186422 vs. ExPASy Swiss-Prot
Match: VPS2B_ARATH (Vacuolar protein sorting-associated protein 2 homolog 2 OS=Arabidopsis thaliana GN=VPS2.2 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.518e-15
Identity = 42/120 (35.00%), Postives = 69/120 (57.50%), Query Frame = -3
Query:  155 VKGVTKAMGQMNRQMNLPSLQKIMQEFERQNEKMEMVTEVMGDAIDDALHGDDXXXXXXELVNQVLDEIGIDINQELVNAPSSTVAAPAVKGKVAQAEATGNDDGGIDSDLQARLDNLRR 514
            +KG TKAM  MN+QM      K++++F++Q+ +++M  E+M +AID+ L  D+      +L NQVLDEIG+ +  +L +AP   +A        + A    N +     +L+ RL +LRR
Sbjct:  102 MKGATKAMVAMNKQMAPTKQAKVIKDFQKQSAQLDMTIEMMSEAIDETLDKDEAEEETEDLTNQVLDEIGVGVASQLSSAPKGRIATKTAAPPASTAATNKNSESSEVDELEKRLASLRR 221          
The following BLAST results are available for this feature:
BLAST of CN186422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
VPS2A_ARATH1.965e-4781.82Vacuolar protein sorting-associated protein 2 homo... [more]
CHM2A_DANRE5.206e-2449.17Charged multivesicular body protein 2a OS=Danio re... [more]
CHM2A_MOUSE6.799e-2450.83Charged multivesicular body protein 2a OS=Mus musc... [more]
CHM2A_HUMAN8.880e-2451.24Charged multivesicular body protein 2a OS=Homo sap... [more]
CHM2A_XENLA7.518e-2348.33Charged multivesicular body protein 2a OS=Xenopus ... [more]
CHM2A_XENTR1.282e-2249.59Charged multivesicular body protein 2a OS=Xenopus ... [more]
CHM2A_CHICK6.364e-2247.50Charged multivesicular body protein 2a OS=Gallus g... [more]
CM2A2_DICDI1.467e-1851.06Charged multivesicular body protein 2a homolog 2 O... [more]
VPS2C_ARATH2.767e-1742.86Vacuolar protein sorting-associated protein 2 homo... [more]
VPS2B_ARATH1.518e-1535.00Vacuolar protein sorting-associated protein 2 homo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002N23_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002N23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186422 ID=CN186422; Name=CN186422; organism=Citrus sinensis; type=EST; length=714bp
AGTCTGAAAAGCAATACATTGAAATCTCGAATTGTCTCACATCCACATTG
ATAAACGCTGGCAGAATTTCACAAATATATTACATCGCTCAAATGAACCC
TAACTTTCTATAGTAGAGCCGATGTCCATATTATACACAAGACAAGTATT
GGGTTCTCCTCAAATTGTCTAACCTGGCTTGCAAGTCACTATCTATCCCA
CCATCATCGTTTCCTGTTGCTTCTGCTTGTGCGACTTTACCCTTTACAGC
TGGTGCGGCCACAGTAGATGATGGTGCATTCACAAGCTCTTGATTGATGT
CAATTCCAATCTCATCAAGAACCTGGTTCACGAGTTCTTCTGTTTCTTCC
TCTTCATCATCACCGTGCAAAGCATCGTCAATTGCATCACCCATGACCTC
AGTCACCATTTCCATCTTCTCATTCTGCCTCTCAAATTCTTGCATAATCT
TCTGCAGTGAAGGCAAGTTCATCTGTCTATTCATCTGGCCCATTGCCTTT
GTCACACCTTTCACAAATCACCAAGAGCAAGAAAGCGAGGGAGAGAATAG
AAGTATCGTTGGGTGGAGTAGTGGTGGTAATAACCGCGGAAAGCAGAAAT
GGCAGCAGCAGAAGAGGGACAAGTCATCGGGTGCCACACCGTTGAGGCCT
GGAACGAGCAGCTCCAGAAGAGCAATGAAACCAAACAGCTGGTTGTTGTT
GATTTCACTGCTTC
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