CN186417

Overview
NameCN186417
Unique NameCN186417
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length557
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3414 contig Csv1_Contig3414:26..582. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186417 vs. ExPASy Swiss-Prot
Match: RL34_PEA (60S ribosomal protein L34 OS=Pisum sativum GN=RPL34 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 7.895e-47
Identity = 90/95 (94.74%), Postives = 92/95 (96.84%), Query Frame = -1
Query:  246 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNHRTVNRTYGGVLSGGAVRERIIRAF 530
            MVQRLTYR+RHSYATKSNQHRVVKTPGGKLVYQ+TKKRASGPKCPVTGKRIQGIPHLRP EYKRSRLSRN RTVNR YGGVLSGGAVRERIIRAF
Sbjct:    1 MVQRLTYRRRHSYATKSNQHRVVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPTEYKRSRLSRNRRTVNRAYGGVLSGGAVRERIIRAF 95          
BLAST of CN186417 vs. ExPASy Swiss-Prot
Match: RL34_TOBAC (60S ribosomal protein L34 OS=Nicotiana tabacum GN=RPL34 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.031e-46
Identity = 90/95 (94.74%), Postives = 91/95 (95.79%), Query Frame = -1
Query:  246 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNHRTVNRTYGGVLSGGAVRERIIRAF 530
            MVQRLTYRKRHSYATKSNQHRVVKTPGGKL+YQSTKKRASGPKCPVTGKRIQGIPHLRP EYKRSRLSRN RTVNR YGGVLSG AVRERIIRAF
Sbjct:    1 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLIYQSTKKRASGPKCPVTGKRIQGIPHLRPTEYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAF 95          
BLAST of CN186417 vs. ExPASy Swiss-Prot
Match: RL341_ARATH (60S ribosomal protein L34-1 OS=Arabidopsis thaliana GN=RPL34A PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 2.540e-45
Identity = 87/95 (91.58%), Postives = 90/95 (94.74%), Query Frame = -1
Query:  246 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNHRTVNRTYGGVLSGGAVRERIIRAF 530
            MVQRL YR RHSYATKSNQHR+VKTPGGKLVYQ+TKKRASGPKCPVTGKRIQGIPHLRP+EYKRSRLSRN RTVNR YGGVLSG AVRERIIRAF
Sbjct:    1 MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPSEYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAF 95          
BLAST of CN186417 vs. ExPASy Swiss-Prot
Match: RL342_ARATH (60S ribosomal protein L34-2 OS=Arabidopsis thaliana GN=RPL34B PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 9.651e-45
Identity = 86/95 (90.53%), Postives = 88/95 (92.63%), Query Frame = -1
Query:  246 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNHRTVNRTYGGVLSGGAVRERIIRAF 530
            MVQRL YR RHSYATKSNQHR+VKTPGGKL YQ+TKKRASGPKCPVTGKRIQGIPHLRP EYKRSRLSRN RTVNR YGGVLSG AVRERIIRAF
Sbjct:    1 MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPTEYKRSRLSRNRRTVNRAYGGVLSGSAVRERIIRAF 95          
BLAST of CN186417 vs. ExPASy Swiss-Prot
Match: RL343_ARATH (60S ribosomal protein L34-3 OS=Arabidopsis thaliana GN=RPL34C PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 8.170e-44
Identity = 84/95 (88.42%), Postives = 88/95 (92.63%), Query Frame = -1
Query:  246 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNHRTVNRTYGGVLSGGAVRERIIRAF 530
            MVQRL YR RHSYATKSNQHR+VKTPGGKL YQ+T KRASGPKCPVTGKRIQGIPHLRPAEYKRSRL+RN RTVNR YGGVLSG AVRERI+RAF
Sbjct:    1 MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLARNERTVNRAYGGVLSGVAVRERIVRAF 95          
BLAST of CN186417 vs. ExPASy Swiss-Prot
Match: RL34A_SCHPO (60S ribosomal protein L34-A OS=Schizosaccharomyces pombe GN=rpl34a PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.558e-21
Identity = 50/95 (52.63%), Postives = 67/95 (70.53%), Query Frame = -1
Query:  246 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNHRTVNRTYGGVLSGGAVRERIIRAF 530
            M QR+TYR+R +Y T+SN+ R++KTPG  + Y   KK  + P+C  TG  +QGIP LRP E+  +RLS N +TV R YGG LS  AV++RI+RAF
Sbjct:    1 MAQRVTYRRRLAYNTRSNRTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPREF--ARLSHNKKTVQRAYGGCLSANAVKDRIVRAF 93          
BLAST of CN186417 vs. ExPASy Swiss-Prot
Match: RL34B_SCHPO (60S ribosomal protein L34-B OS=Schizosaccharomyces pombe GN=rpl34b PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.719e-21
Identity = 49/95 (51.58%), Postives = 66/95 (69.47%), Query Frame = -1
Query:  246 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNHRTVNRTYGGVLSGGAVRERIIRAF 530
            M QR+TYR+R +Y T+SN+ R++KTPG  + Y   KK  + P+C  TG  +QGIP LRP E+  +RLS N + V R YGG LS  AV++RI+RAF
Sbjct:    1 MAQRVTYRRRLAYNTRSNKTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPREF--ARLSHNQKKVQRAYGGCLSANAVKDRIVRAF 93          
BLAST of CN186417 vs. ExPASy Swiss-Prot
Match: RL34_AEDTR (60S ribosomal protein L34 OS=Aedes triseriatus GN=RpL34 PE=2 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 1.658e-20
Identity = 53/95 (55.79%), Postives = 67/95 (70.53%), Query Frame = -1
Query:  246 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNHRTVNRTYGGVLSGGAVRERIIRAF 530
            MVQRLT R+R SY TKSN+ RVV+TPGG+LVY   KK+ + PKC    +++ GI   RP+E  R R+ R  +TV RT+GGVL    +RERIIRAF
Sbjct:    1 MVQRLTLRRRLSYNTKSNKRRVVRTPGGRLVYLYVKKQRTVPKCGQCKEKLSGIKPSRPSE--RPRMCRRLKTVTRTFGGVLCHRCLRERIIRAF 93          
BLAST of CN186417 vs. ExPASy Swiss-Prot
Match: RL34_AEDAL (60S ribosomal protein L34 OS=Aedes albopictus GN=RpL34 PE=2 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 1.658e-20
Identity = 53/95 (55.79%), Postives = 67/95 (70.53%), Query Frame = -1
Query:  246 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNHRTVNRTYGGVLSGGAVRERIIRAF 530
            MVQRLT R+R SY TKSN+ RVV+TPGG+LVY   KK+ + PKC    +++ GI   RP+E  R R+ R  +TV RT+GGVL    +RERIIRAF
Sbjct:    1 MVQRLTLRRRLSYNTKSNKRRVVRTPGGRLVYLYVKKQRTVPKCGQCKEKLSGIKPSRPSE--RPRMCRRLKTVTRTFGGVLCHRCLRERIIRAF 93          
BLAST of CN186417 vs. ExPASy Swiss-Prot
Match: RL34_DICDI (60S ribosomal protein L34 OS=Dictyostelium discoideum GN=rpl34 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.828e-20
Identity = 51/95 (53.68%), Postives = 62/95 (65.26%), Query Frame = -1
Query:  246 MVQRLTYRKRHSYATKSNQHRVVKTPGGKLVYQSTKKRASGPKCPVTGKRIQGIPHLRPAEYKRSRLSRNHRTVNRTYGGVLSGGAVRERIIRAF 530
            MVQRLTYR+R SY T SN  ++VKTPGG+LVYQ   K    P+C   G  + GIP LRP +YK   L ++ RTV+R YGG      VR RI+RAF
Sbjct:    1 MVQRLTYRRRLSYRTTSNATKIVKTPGGRLVYQYIGKTGKVPRCGECGVNLAGIPALRPYQYK--NLPKSRRTVSRAYGGSKCAKCVRNRIVRAF 93          
The following BLAST results are available for this feature:
BLAST of CN186417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
RL34_PEA7.895e-4794.7460S ribosomal protein L34 OS=Pisum sativum GN=RPL3... [more]
RL34_TOBAC1.031e-4694.7460S ribosomal protein L34 OS=Nicotiana tabacum GN=... [more]
RL341_ARATH2.540e-4591.5860S ribosomal protein L34-1 OS=Arabidopsis thalian... [more]
RL342_ARATH9.651e-4590.5360S ribosomal protein L34-2 OS=Arabidopsis thalian... [more]
RL343_ARATH8.170e-4488.4260S ribosomal protein L34-3 OS=Arabidopsis thalian... [more]
RL34A_SCHPO2.558e-2152.6360S ribosomal protein L34-A OS=Schizosaccharomyces... [more]
RL34B_SCHPO9.719e-2151.5860S ribosomal protein L34-B OS=Schizosaccharomyces... [more]
RL34_AEDTR1.658e-2055.7960S ribosomal protein L34 OS=Aedes triseriatus GN=... [more]
RL34_AEDAL1.658e-2055.7960S ribosomal protein L34 OS=Aedes albopictus GN=R... [more]
RL34_DICDI2.828e-2053.6860S ribosomal protein L34 OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002N20_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002N20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186417 ID=CN186417; Name=CN186417; organism=Citrus sinensis; type=EST; length=557bp
GAGGATTGATTTCTCTTCAAAATTTAAGTAATCAATATCAAACAGACTAA
ATAATATAAAAGAACGTTCAACTCTCTCAGTACCACATCATTGATCATAA
CCACACCAAAATTTCTCTATCCCACGTTCTACAGTTGAAAAAGGATTAGC
TTTTATCTTCCCATTTTCTAGCTCTTTAAGGCCTGCTTTTCCTTTGCTTT
CTGGATCTTCAAAACTTTCTTCACAATCTTCTGTTCTTCCACCAAGAATG
CTCGAATTATCCTCTCCCTGACAGCCCCACCAGACAATACTCCACCATAA
GTACGATTCACAGTCCTGTGGTTTCTTGACAATCTAGACCTCTTGTACTC
AGCAGGTCTCAAGTGAGGAATCCCTTGAATTCTCTTGCCAGTAACAGGAC
ACTTAGGCCCACTAGCTCTCTTCTTGGTGCTCTGGTACACCAATTTTCCA
CCAGGGGTTTTAACAACCCGGTGCTGGTTTGATTTGGTGGCATAGCTGTG
CCGTTTGCGGTATGTTAGCCGCTGAACCATTTTTTTTTTTTTTTTTTTTT
TTTTTTT
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