CN186402

Overview
NameCN186402
Unique NameCN186402
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length744
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186402 vs. ExPASy Swiss-Prot
Match: MGP_ARATH (Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP PE=1 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.155e-77
Identity = 130/166 (78.31%), Postives = 147/166 (88.55%), Query Frame = 2
Query:  158 KKKRSLPGTPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVKKRVYVCPEKSCVHHDPTRALGDLTGIKKHFCRKHGEXXXXXXXXXXXYAVQSDYKAHSKVCGTKEYKCDCGAVFSRRDSFITHRAFCDMLTKESAKVQS 655
            KKKR+LPG PDP+AEVIALSPKTL+ATNRF+CEIC KGFQRDQNLQLHRRGHNLPWKL+QR++KEV+KRVYVCPEKSCVHH PTRALGDLTGIKKHFCRKHGE           YAVQSD+KAHSK CGT+EY+CDCG +FSRRDSFITHRAFCD L +E+A++ +
Sbjct:   41 KKKRNLPGNPDPEAEVIALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKSCVHHHPTRALGDLTGIKKHFCRKHGEKKWKCEKCAKRYAVQSDWKAHSKTCGTREYRCDCGTIFSRRDSFITHRAFCDALAEETARLNA 206          
BLAST of CN186402 vs. ExPASy Swiss-Prot
Match: NUC_ARATH (Zinc finger protein NUTCRACKER OS=Arabidopsis thaliana GN=NUC PE=2 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 1.081e-75
Identity = 126/166 (75.90%), Postives = 145/166 (87.35%), Query Frame = 2
Query:  158 KKKRSLPGTPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVKKRVYVCPEKSCVHHDPTRALGDLTGIKKHFCRKHGEXXXXXXXXXXXYAVQSDYKAHSKVCGTKEYKCDCGAVFSRRDSFITHRAFCDMLTKESAKVQS 655
            KKKR+LPG PDP+AEVIALSP TL+ATNRF+CE+C KGFQRDQNLQLHRRGHNLPWKL+QR++KEV+KRVYVCPEK+CVHH  +RALGDLTGIKKHFCRKHGE           YAVQSD+KAHSK CGT+EY+CDCG +FSRRDSFITHRAFCD L +E+AK+ +
Sbjct:   37 KKKRNLPGNPDPEAEVIALSPTTLMATNRFLCEVCGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHSSRALGDLTGIKKHFCRKHGEKKWTCEKCAKRYAVQSDWKAHSKTCGTREYRCDCGTIFSRRDSFITHRAFCDALAEETAKINA 202          
BLAST of CN186402 vs. ExPASy Swiss-Prot
Match: JKD_ARATH (Zinc finger protein JACKDAW OS=Arabidopsis thaliana GN=JKD PE=1 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 5.365e-75
Identity = 132/182 (72.53%), Postives = 152/182 (83.52%), Query Frame = 2
Query:  128 NQNAPPKSTN-KKKRSLPGTPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEV-KKRVYVCPEKSCVHHDPTRALGDLTGIKKHFCRKHGEXXXXXXXXXXXYAVQSDYKAHSKVCGTKEYKCDCGAVFSRRDSFITHRAFCDMLTKESAKVQSEEPN 667
            N NA P S++ KKKR+ PGTPDPDA+VIALSP TL+ATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKL+QRS +EV KK+VY+CP K+CVHHD +RALGDLTGIKKH+ RKHGE           YAVQSD+KAH+K CGT+EYKCDCG +FSR+DSFITHRAFCD LT+E A++ S   N
Sbjct:   42 NPNAKPNSSSAKKKRNQPGTPDPDADVIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSKQEVIKKKVYICPIKTCVHHDASRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHAKTCGTREYKCDCGTLFSRKDSFITHRAFCDALTEEGARMSSLSNN 223          
BLAST of CN186402 vs. ExPASy Swiss-Prot
Match: STOP1_ARATH (Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Arabidopsis thaliana GN=STOP1 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.642e-15
Identity = 49/157 (31.21%), Postives = 70/157 (44.59%), Query Frame = 2
Query:  185 PDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVKKRV----------YVCPEKSC---VHHDPTRALGDLTGIKKHFCRKH-GEXXXXXXXXXXXYAVQSDYKAHSKVCGTKEYKCDCGAVFSRRDSFITHRA 613
            P    E++ L  + +LA +   C IC KGF+RD NL++H RGH   +K      K  K+ V          Y CP   C     H   + L  +  +K H+ R H  +           ++V +D K H K CG  ++ C CG  FSR+D    H A
Sbjct:  224 PPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKESVPGSEPMLIKRYSCPFLGCKRNKEHKKFQPLKTILCVKNHYKRTHCDKSFTCSRCHTKKFSVIADLKTHEKHCGKNKWLCSCGTTFSRKDKLFGHIA 380          
BLAST of CN186402 vs. ExPASy Swiss-Prot
Match: TT1_ARATH (Protein TRANSPARENT TESTA 1 OS=Arabidopsis thaliana GN=TT1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.101e-11
Identity = 41/135 (30.37%), Postives = 61/135 (45.19%), Query Frame = 2
Query:  227 LLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVKKRV------YVCPE--KSCVHHDPTRALGDLTGIKKHFCRKHGEXXXXXXXXXXXYAVQSDYKAHSKVCGTKEYKCDCGAVFSRRDSFITH 607
            L+    F C +C K F R  NLQ+H  GH   ++    S K  + R       Y C E  ++ + H  ++ L D   ++ H+ RKHG             AV+ D++ H K CG K + C CG+ F  + S   H
Sbjct:  139 LIGFTHFSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAMLGIPCYCCVEGCRNHIDHPRSKPLKDFRTLQTHYKRKHGHKPFSCRLCGKLLAVKGDWRTHEKNCG-KRWVCVCGSDFKHKRSLKDH 272          
The following BLAST results are available for this feature:
BLAST of CN186402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
MGP_ARATH1.155e-7778.31Zinc finger protein MAGPIE OS=Arabidopsis thaliana... [more]
NUC_ARATH1.081e-7575.90Zinc finger protein NUTCRACKER OS=Arabidopsis thal... [more]
JKD_ARATH5.365e-7572.53Zinc finger protein JACKDAW OS=Arabidopsis thalian... [more]
STOP1_ARATH1.642e-1531.21Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Ara... [more]
TT1_ARATH1.101e-1130.37Protein TRANSPARENT TESTA 1 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0002N12_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002N12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186402 ID=CN186402; Name=CN186402; organism=Citrus sinensis; type=EST; length=744bp
AGGAGAAACCCTAAACAAAGTCTTATCGTTTTTCAGTTAAAATATCAGCT
CTCTGATTTTTCTCATGCCGGTAGACTTGGAAAATTCCTCTACAGCTTCC
GGTGAAGCTAGCGTCTCTTCTACTGGTAACCAAAACGCACCTCCCAAATC
CACCAACAAGAAAAAGCGTAGCCTCCCTGGAACACCAGATCCAGATGCAG
AGGTGATCGCTCTGTCTCCTAAGACCCTCTTGGCTACCAACCGATTCGTG
TGTGAAATCTGCAACAAAGGGTTTCAAAGAGACCAGAATTTGCAGCTTCA
TCGACGAGGCCATAACTTGCCTTGGAAATTGAGGCAGAGATCGAACAAAG
AAGTGAAGAAGAGAGTTTATGTTTGTCCAGAAAAGTCTTGTGTTCATCAC
GATCCCACTAGAGCTTTAGGTGATCTTACTGGTATCAAGAAGCACTTTTG
TAGAAAGCACGGGGAAAAGAAGTGGAAATGTGACAAGTGTTCTAAGAAAT
ATGCTGTGCAGTCTGATTATAAAGCACACTCCAAAGTTTGTGGCACTAAA
GAGTACAAATGCGATTGTGGGGCTGTATTTTCCAGGAGGGATAGCTTCAT
AACTCACAGAGCTTTCTGTGATATGCTGACAAAGGAGAGCGCCAAAGTTC
AGAGTGAAGAACCAAATCTAATTGAGGGAATGGTGAAGCCGAACACAGAA
TCCGACCCGAAAGTTCAGCCCGTTGATTCTTCTACTTCGACACC
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