CX069674

Overview
NameCX069674
Unique NameCX069674
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length437
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX069674_ssr380 microsatellite CX069674_ssr380:380..391. BLAST: Citrus ESTs to TAIR9
Homology
[Close]
BLAST of CX069674 vs. ExPASy Swiss-Prot
Match: NU6C_CITSI (NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic OS=Citrus sinensis GN=ndhG PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.820e-11
Identity = 32/32 (100.00%), Postives = 32/32 (100.00%), Query Frame = 1 
Query:    1 TTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 96
            TTRANQIIEQDLISNSQQIGIHLSTDFFLPFE
Sbjct:  128 TTRANQIIEQDLISNSQQIGIHLSTDFFLPFE 159
The following BLAST results are available for this feature:
BLAST of CX069674 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
NU6C_CITSI4.820e-11100.00NAD(P)H-quinone oxidoreductase subunit 6, chloropl... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_12A12_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-12A12-B24-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX069674 ID=CX069674; Name=CX069674; organism=Citrus sinensis; type=EST; length=437bp
ACTACACGAGCCAACCAGATTATTGAACAAGATTTGATAAGTAATAGTCA
ACAAATTGGAATTCATTTATCAACAGACTTTTTTCTTCCATTTGAACTCG
TTTCAATAATTCTTTTAGTTGCTTTAATAGGTGCAATTGCCGTGGCGCGT
CAATAACAAATCTTTATAACTAGGAACAGCAATCCCAATTCGACTTTTTA
TGTGTTATCACATTCATTATGTGTTATCACATTCATTTCCCTTAAATTCT
TGTAAAGTCTAGTTGAATACTATTCACAGATCAATAGAAAATCAAAATAG
AATTTTTTTTATTCGATCTATTACCAAATGGATTCTTTTGTTCCGTACCT
GGTATATTCTAAGCAACCAAATCACTTGCATTATTATTATTGTTCAGATT
GAAATGAATCGAAATTGGTACGGAGTTGGTTAATGAT
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