CN186399

Overview
NameCN186399
Unique NameCN186399
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186399 vs. ExPASy Swiss-Prot
Match: DHSA_ORYSJ (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Oryza sativa subsp. japonica GN=SDH1 PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 2.957e-61
Identity = 112/135 (82.96%), Postives = 119/135 (88.15%), Query Frame = -2
Query:  284 KIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXNACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGYWENEKVRLDYRPVHMNTLDDEIESFPPKARVY 688
            KIRLNMQRVMQNNAAVFRTQETLEEGC+LI KAWES+HDVK++DRSLIWN+D            NACITMHSAEARKESRGAHAREDFTKRDDE WMKH+LGYWENEKVRL YRPVHMNTLD E+ESFPPKARVY
Sbjct:  496 KIRLNMQRVMQNNAAVFRTQETLEEGCKLITKAWESYHDVKISDRSLIWNSDLIETIELENLLINACITMHSAEARKESRGAHAREDFTKRDDEQWMKHSLGYWENEKVRLAYRPVHMNTLDSEVESFPPKARVY 630          
BLAST of CN186399 vs. ExPASy Swiss-Prot
Match: DHSA1_ARATH (Succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial OS=Arabidopsis thaliana GN=SDH1-1 PE=1 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 6.816e-58
Identity = 107/134 (79.85%), Postives = 117/134 (87.31%), Query Frame = -2
Query:  284 IRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXNACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGYWENEKVRLDYRPVHMNTLDDEIESFPPKARVY 685
            IRLNMQR+MQNNAAVFRTQETLEEGCQLIDKAWESF DV++ DRS+IWN+D            NA ITMHSAEARKESRGAHAREDFTKR+D  WMKHTLGYWE+EKVRLDYRPVHM+TLDDEI++FPPKARVY
Sbjct:  501 IRLNMQRIMQNNAAVFRTQETLEEGCQLIDKAWESFGDVQVKDRSMIWNSDLIETLELENLLINASITMHSAEARKESRGAHAREDFTKREDGEWMKHTLGYWEDEKVRLDYRPVHMDTLDDEIDTFPPKARVY 634          
BLAST of CN186399 vs. ExPASy Swiss-Prot
Match: DHSA2_ARATH (Succinate dehydrogenase [ubiquinone] flavoprotein subunit 2, mitochondrial OS=Arabidopsis thaliana GN=SDH1-2 PE=1 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.163e-57
Identity = 105/135 (77.78%), Postives = 114/135 (84.44%), Query Frame = -2
Query:  284 KIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXNACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGYWENEKVRLDYRPVHMNTLDDEIESFPPKARVY 688
            KIRLNMQRVMQNNAAVFRTQETLEEGC LIDK W+SF DVK+TDRS+IWN+D            NACITMHSAEARKESRGAHAREDFTKRDD NWMKHTLGYWE   V+L+YRPVHM TLDDE+++FPPK RVY
Sbjct:  498 KIRLNMQRVMQNNAAVFRTQETLEEGCDLIDKTWDSFGDVKVTDRSMIWNSDLIETMELENLLVNACITMHSAEARKESRGAHAREDFTKRDDANWMKHTLGYWEEGNVKLEYRPVHMKTLDDEVDTFPPKPRVY 632          
BLAST of CN186399 vs. ExPASy Swiss-Prot
Match: DHSA_DICDI (Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Dictyostelium discoideum GN=sdhA PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.024e-34
Identity = 78/139 (56.12%), Postives = 95/139 (68.35%), Query Frame = -2
Query:  284 KIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESF-HDVKLTDRSLIWNTDXXXXXXXXXXXXNACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGYWE--NEKVRLDYRPVHMNTLD-DEIESFPPKARVY 688
            +IRL MQ++MQ NAAVFR  + L+EG +LIDK   S  +D+K TDR++IWNTD             A +TMHSAEARKESRGAHARED+ +RDD NWMKHTL Y +    KV L+YRPV   TLD  E+E+  P  RVY
Sbjct:  488 EIRLEMQKIMQRNAAVFRDGQVLKEGVELIDKCARSLINDLKTTDRTMIWNTDLIESLELQNLMTQAVLTMHSAEARKESRGAHAREDYKERDDANWMKHTLSYLDVNTGKVTLNYRPVVSETLDQSEMETIKPFKRVY 626          
BLAST of CN186399 vs. ExPASy Swiss-Prot
Match: DHSA_RICBR (Succinate dehydrogenase flavoprotein subunit OS=Rickettsia bellii (strain RML369-C) GN=sdhA PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.608e-33
Identity = 69/135 (51.11%), Postives = 94/135 (69.63%), Query Frame = -2
Query:  284 IRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXNACITMHSAEARKESRGAHAREDFTKRDDENWMKHTL-GYWENEKVRLDYRPVHMNTLDDEIESFPPKARVY 685
            +RL MQR MQ++A+VFRTQE L+EG ++I +    + D+K+ D+SLIWN+D             A +T++SA ARKESRGAHARED+  R+D+ WM+HTL G  E  KV LDY+PV + TL DE+++ PP  RVY
Sbjct:  462 LRLKMQRTMQSHASVFRTQEVLDEGAEMISEIRSGYKDIKVNDKSLIWNSDLVEALELDNLLDQALVTVYSAAARKESRGAHAREDYPDRNDKEWMQHTLSGVDEAGKVVLDYKPVTLTTLSDEVKAIPPAKRVY 596          
BLAST of CN186399 vs. ExPASy Swiss-Prot
Match: DHSA_RICCN (Succinate dehydrogenase flavoprotein subunit OS=Rickettsia conorii GN=sdhA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 7.589e-33
Identity = 70/136 (51.47%), Postives = 93/136 (68.38%), Query Frame = -2
Query:  284 KIRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXNACITMHSAEARKESRGAHAREDFTKRDDENWMKHTL-GYWENEKVRLDYRPVHMNTLDDEIESFPPKARVY 688
            ++RL MQR MQ++A+VFRTQE L+EG  +I +    + D+K+ D+SLIWN+D             A +T++SA ARKESRGAHARED+  R+DE+WMKHTL    E  KV LDY+PV + TL DE+ + PP  RVY
Sbjct:  461 ELRLKMQRTMQSHASVFRTQEVLDEGAGMISEIRSGYKDIKINDKSLIWNSDLVEALELDNLLDQALVTVYSAAARKESRGAHAREDYPDRNDEDWMKHTLSSIDEAGKVVLDYKPVTLTTLTDEVTAVPPVKRVY 596          
BLAST of CN186399 vs. ExPASy Swiss-Prot
Match: DHSA_RICFE (Succinate dehydrogenase flavoprotein subunit OS=Rickettsia felis GN=sdhA PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.919e-32
Identity = 68/135 (50.37%), Postives = 91/135 (67.41%), Query Frame = -2
Query:  284 IRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXNACITMHSAEARKESRGAHAREDFTKRDDENWMKHTL-GYWENEKVRLDYRPVHMNTLDDEIESFPPKARVY 685
            +RL MQR MQ++A+VFRTQE L+EG  +I +    + D+K+ D+SLIWN+D             A +T++SA ARKESRGAHARED+  R+D +WMKHTL    E  K+ +DY+PV + TL DEI + PP  RVY
Sbjct:  462 LRLKMQRTMQSHASVFRTQEVLDEGAGMISEIRNGYKDIKINDKSLIWNSDLVEALELDNLLDQALVTVYSAAARKESRGAHAREDYPDRNDGDWMKHTLSSIDEAGKIVIDYKPVTLTTLTDEISAIPPAKRVY 596          
BLAST of CN186399 vs. ExPASy Swiss-Prot
Match: DHSA_RICTY (Succinate dehydrogenase flavoprotein subunit OS=Rickettsia typhi GN=sdhA PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.103e-31
Identity = 64/135 (47.41%), Postives = 92/135 (68.15%), Query Frame = -2
Query:  284 IRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXNACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGYWENE-KVRLDYRPVHMNTLDDEIESFPPKARVY 685
            +RL MQR MQ++ +VFRTQE L+EG ++I +    + D+K+ D+SLIWN+D             A +T++SA ARKESRGAHARED+  R+D +W+KHTL   ++  ++ LDY+PV + TL DEI + PP  R+Y
Sbjct:  462 LRLQMQRTMQSHVSVFRTQELLDEGARMISEIRNRYKDIKINDKSLIWNSDLVEALELDNLLDQALVTVYSAAARKESRGAHAREDYPDRNDIDWIKHTLSSIDDSGQIILDYKPVTLTTLTDEISTIPPVKRIY 596          
BLAST of CN186399 vs. ExPASy Swiss-Prot
Match: DHSA_RICPR (Succinate dehydrogenase flavoprotein subunit OS=Rickettsia prowazekii GN=sdhA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.026e-29
Identity = 65/135 (48.15%), Postives = 89/135 (65.93%), Query Frame = -2
Query:  284 IRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXNACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGYWENE-KVRLDYRPVHMNTLDDEIESFPPKARVY 685
            +RL MQR MQ++ +VFRTQ+ L+EG  +I +    + D+K+ D+SLIWN+D             A +T+ SA ARKESRGAHARED+  R+D +W+KHTL   ++  KV LDY+PV + TL D I + PP  RVY
Sbjct:  462 LRLKMQRTMQSHVSVFRTQKLLDEGVGMISEIRNRYKDIKINDKSLIWNSDLVEALELDNLLDQALVTVCSAAARKESRGAHAREDYPDRNDRDWIKHTLSSIDDSGKVVLDYKPVTLTTLTDAISAIPPVKRVY 596          
BLAST of CN186399 vs. ExPASy Swiss-Prot
Match: DHSA_PARDE (Succinate dehydrogenase flavoprotein subunit OS=Paracoccus denitrificans GN=sdhA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.934e-28
Identity = 70/140 (50.00%), Postives = 87/140 (62.14%), Query Frame = -2
Query:  284 IRLNMQRVMQNNAAVFRTQETLEEGCQLIDKAWESFHDVKLTDRSLIWNTDXXXXXXXXXXXXNACITMHSAEARKESRGAHAREDFTKRDDENWMKHTLGYWENEKVRLDYRPVHMN--TLDDE----IESFPPKARVY 685
            +RL MQR MQ +AAVFRT +TL EG   +        D+K+TDRSLIWN+D            NA  T+ +AEARKESRGAHA ED+ +RDD NW KH+L + E   V+L YRPVH+   T  DE    ++   PKARVY
Sbjct:  461 LRLEMQRTMQADAAVFRTDKTLAEGVDKMRVIAGKLSDLKVTDRSLIWNSDLMETLELTNLMPNALATIVAAEARKESRGAHAHEDYPERDDANWRKHSLAWIEGNDVKLAYRPVHLEPLTRQDEGGIDLKKIAPKARVY 600          
The following BLAST results are available for this feature:
BLAST of CN186399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
DHSA_ORYSJ2.957e-6182.96Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA1_ARATH6.816e-5879.85Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA2_ARATH1.163e-5777.78Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_DICDI4.024e-3456.12Succinate dehydrogenase [ubiquinone] flavoprotein ... [more]
DHSA_RICBR2.608e-3351.11Succinate dehydrogenase flavoprotein subunit OS=Ri... [more]
DHSA_RICCN7.589e-3351.47Succinate dehydrogenase flavoprotein subunit OS=Ri... [more]
DHSA_RICFE4.919e-3250.37Succinate dehydrogenase flavoprotein subunit OS=Ri... [more]
DHSA_RICTY7.103e-3147.41Succinate dehydrogenase flavoprotein subunit OS=Ri... [more]
DHSA_RICPR1.026e-2948.15Succinate dehydrogenase flavoprotein subunit OS=Ri... [more]
DHSA_PARDE1.934e-2850.00Succinate dehydrogenase flavoprotein subunit OS=Pa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002N10_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002N10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186399 ID=CN186399; Name=CN186399; organism=Citrus sinensis; type=EST; length=689bp
TTTTTTTTTCGCTAAGCCAAAATATATTATTATTAATTTAACAATGAGTT
TAAACACCTATCCAGCCGTCCAACAACCATAAAGCTTATTACCCGCGCTT
AAGCATGAACAAAATGCAAACTCTGGTTGAAATTGATAGAACCTTGCAAT
ATTAGAAGTTTAATTCTGATCAATGCAATAATTATTTTGCCAAAATGCTG
TAGCTACAACAATTTATTGAATTCCCCCCTCTCTTCCTTCCTTTCTCCAG
TTTTTCTTATTTTTGGGGAGAGCAGATAGATCAATATACACGAGCTTTAG
GTGGGAAGGACTCAATTTCATCGTCCAGCGTATTCATGTGAACTGGTCTG
TAATCCAATCGTACCTTCTCATTCTCCCAATATCCCAGAGTGTGCTTCAT
CCAGTTCTCATCATCTCTTTTCGTAAAATCTTCACGTGCATGAGCTCCTC
TACTCTCTTTCCTGGCTTCAGCAGAATGCATGGTGATGCATGCATTTATC
AAAAGGTTTTCCAACTCTATAGTTTCTATCAAGTCAGTGTTCCATATCAA
ACTACGATCTGTCAACTTAACATCATGGAAACTCTCCCATGCCTTGTCAA
TTAATTGACAACCTTCCTCCAATGTTTCCTGTGTTCGGAAGACAGCGGCA
TTATTTTGCATCACGCGTTGCATATTCAACCGAATTTTT
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