CN186388

Overview
NameCN186388
Unique NameCN186388
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11173 contig Csv1_Contig11173:698..1454. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186388 vs. ExPASy Swiss-Prot
Match: ODPB_PEA (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 7.749e-85
Identity = 161/176 (91.48%), Postives = 166/176 (94.32%), Query Frame = -1
Query:  230 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYRSVPMAAAA 757
            IRDPDPVVFLENELLYGESFPVSAEVLDSSF LPIGKAKIEREGKDVTITAFSK+VG +LKAAEIL KEGISAEVINLRSIRPLDR TINASVRKTNRLVTVEEGFPQHGVGAEIC SVIEESFGYLDA VERI GADVPMPYA NLER+ VP VEDIVRAAKRAC+RSVP+AAAA
Sbjct:  184 IRDPDPVVFLENELLYGESFPVSAEVLDSSFWLPIGKAKIEREGKDVTITAFSKMVGFALKAAEILEKEGISAEVINLRSIRPLDRPTINASVRKTNRLVTVEEGFPQHGVGAEICTSVIEESFGYLDATVERIGGADVPMPYAGNLERLVVPHVEDIVRAAKRACHRSVPLAAAA 359          
BLAST of CN186388 vs. ExPASy Swiss-Prot
Match: ODPB_ARATH (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Arabidopsis thaliana GN=PDH2 PE=1 SV=2)

HSP 1 Score: 300.056 bits (767), Expect = 8.866e-81
Identity = 150/169 (88.76%), Postives = 161/169 (95.27%), Query Frame = -1
Query:  251 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYRS 757
            IRDPDPVVFLENELLYGESFP+S E LDSSFCLPIGKAKIEREGKDVTI  FSK+VG +LKAAE LA+EGISAEVINLRSIRPLDR+TINASVRKT+RLVTVEEGFPQHGV AEICASV+EESF YLDAPVERIAGADVPMPYAANLER+A+PQ+EDIVRA+KRACYRS
Sbjct:  194 IRDPDPVVFLENELLYGESFPISEEALDSSFCLPIGKAKIEREGKDVTIVTFSKMVGFALKAAEKLAEEGISAEVINLRSIRPLDRATINASVRKTSRLVTVEEGFPQHGVCAEICASVVEESFSYLDAPVERIAGADVPMPYAANLERLALPQIEDIVRASKRACYRS 362          
BLAST of CN186388 vs. ExPASy Swiss-Prot
Match: ODPB_DICDI (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Dictyostelium discoideum GN=pdhB PE=1 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.176e-54
Identity = 107/169 (63.31%), Postives = 134/169 (79.29%), Query Frame = -1
Query:  251 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYRS 757
            IRD +PVV+LE+ELLY   F +S +  D  + +PIGKAK+EREGKDVTI  FS+IV   ++AAEILAKEGISAEVINLR+IRP+D  TI  S++KTN+LVTVEEG+ Q G+GAEI A ++E +F YLDAP+ERI GADVPMPYA+NLE  A+ Q ++IV AAKR   R+
Sbjct:  187 IRDDNPVVYLESELLYNYKFDLSDQEQDKEYLVPIGKAKVEREGKDVTIVGFSRIVSNCMEAAEILAKEGISAEVINLRTIRPIDAETIVNSLKKTNKLVTVEEGWAQSGIGAEISALMMEHAFDYLDAPIERICGADVPMPYASNLENAAMVQTQNIVNAAKRVTQRN 355          
BLAST of CN186388 vs. ExPASy Swiss-Prot
Match: ODPB_MOUSE (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Mus musculus GN=Pdhb PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.604e-48
Identity = 99/165 (60.00%), Postives = 123/165 (74.55%), Query Frame = -1
Query:  266 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKR 757
            IRD +PVV LENEL+YG +F + AE     F +PIGKAKIER+G  +T+ A S+ VG  L+AA +L+KEGI  EVINLR+IRP+D   I ASV KTN LVTVE G+PQ GVGAEICA ++E  +F +LDAP  R+ GADVPMPYA  LE  +VPQV+DI+ A K+
Sbjct:  191 IRDNNPVVMLENELMYGVAFELPAEAQSKDFLIPIGKAKIERQGTHITVVAHSRPVGHCLEAAAVLSKEGIECEVINLRTIRPMDIEAIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKVLEDNSVPQVKDIIFAVKK 355          
BLAST of CN186388 vs. ExPASy Swiss-Prot
Match: ODPB_YEAST (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Saccharomyces cerevisiae GN=PDB1 PE=1 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 7.576e-48
Identity = 103/165 (62.42%), Postives = 122/165 (73.94%), Query Frame = -1
Query:  269 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKE-GISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAK 757
            IRDP+PVVFLENELLYGESF +S E L   F LP  KAKIEREG D++I  +++ V  SL+AAEIL K+ G+SAEVINLRSIRPLD   I  +V+KTN L+TVE  FP  GVGAEI A V+E E+F YLDAP++R+ GADVP PYA  LE  A P    IV+A K
Sbjct:  197 IRDPNPVVFLENELLYGESFEISEEALSPEFTLPY-KAKIEREGTDISIVTYTRNVQFSLEAAEILQKKYGVSAEVINLRSIRPLDTEAIIKTVKKTNHLITVESTFPSFGVGAEIVAQVMESEAFDYLDAPIQRVTGADVPTPYAKELEDFAFPDTPTIVKAVK 360          
BLAST of CN186388 vs. ExPASy Swiss-Prot
Match: ODPB_BOVIN (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Bos taurus GN=PDHB PE=1 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 7.576e-48
Identity = 100/165 (60.61%), Postives = 122/165 (73.94%), Query Frame = -1
Query:  266 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKR 757
            IRD +PVV LENEL+YG  F + +E     F +PIGKAKIER+G  VTI A S+ VG  L+AA +L+KEGI  EVINLR+IRP+D  TI  SV KTN LVTVE G+PQ GVGAEICA ++E  +F +LDAP  R+ GADVPMPYA  LE  +VPQV+DI+ A K+
Sbjct:  191 IRDNNPVVVLENELMYGVPFELPSEAQSKDFLIPIGKAKIERQGTHVTIVAHSRPVGHCLEAATVLSKEGIECEVINLRTIRPMDIETIEGSVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSVPQVKDIIFAIKK 355          
BLAST of CN186388 vs. ExPASy Swiss-Prot
Match: ODPB_RAT (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Rattus norvegicus GN=Pdhb PE=1 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 9.894e-48
Identity = 97/165 (58.79%), Postives = 122/165 (73.94%), Query Frame = -1
Query:  266 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKR 757
            IRD +PVV LENEL+YG +F +  E     F +PIGKAKIER+G  +T+ A S+ VG  L+AA +L+KEGI  EVINLR+IRP+D   I ASV KTN LVTVE G+PQ GVGAEICA ++E  +F +LDAP  R+ GADVPMPYA  LE  ++PQV+DI+ A K+
Sbjct:  191 IRDDNPVVMLENELMYGVAFELPTEAQSKDFLIPIGKAKIERQGTHITVVAHSRPVGHCLEAAAVLSKEGIECEVINLRTIRPMDIEAIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSIPQVKDIIFAIKK 355          
BLAST of CN186388 vs. ExPASy Swiss-Prot
Match: ODPB_SCHPO (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Schizosaccharomyces pombe GN=pdb1 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.204e-47
Identity = 97/169 (57.40%), Postives = 128/169 (75.74%), Query Frame = -1
Query:  257 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEIL-AKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACY 757
            IRDP+PVV LENE+LYG++FP+S E L   F LP G AK+ER GKD+TI   S  V  +L+AA+ L A  G+ AEVINLRSIRPLD +TI ASV+KTNR+VTV++ + QHG+G+EI A ++E ++F YLDAPVER++ ADVPMPY+  +E  +VP  + +V AAK+  Y
Sbjct:  196 IRDPNPVVVLENEILYGKTFPISKEALSEDFVLPFGLAKVERPGKDITIVGESISVVTALEAADKLKADYGVEAEVINLRSIRPLDINTIAASVKKTNRIVTVDQAYSQHGIGSEIAAQIMESDAFDYLDAPVERVSMADVPMPYSHPVEAASVPNADVVVAAAKKCLY 364          
BLAST of CN186388 vs. ExPASy Swiss-Prot
Match: ODPB_RHIME (Pyruvate dehydrogenase E1 component subunit beta OS=Rhizobium meliloti GN=pdhB PE=3 SV=2)

HSP 1 Score: 188.348 bits (477), Expect = 3.760e-47
Identity = 95/168 (56.55%), Postives = 124/168 (73.81%), Query Frame = -1
Query:  254 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKRACYR 757
            IRDP+PV+FLENE+LYG+SF V    LD  F LPIGKA+I R GKD T+ +F   +  ++KAA  L  +GI  E+I+LR+IRP+D  T+  SV+KT RLVTVEEG+PQ  VG EI   V++++F YLDAP+  IAG DVPMPYAANLE++A+P V ++V A K  CY+
Sbjct:  296 IRDPNPVIFLENEILYGQSFEVPK--LDD-FVLPIGKARIHRTGKDATLVSFGIGMTYAIKAAAELEAQGIDVEIIDLRTIRPMDLPTVIESVKKTGRLVTVEEGYPQSSVGTEIATRVMQQAFDYLDAPILTIAGKDVPMPYAANLEKLALPNVAEVVDAVKAVCYK 460          
BLAST of CN186388 vs. ExPASy Swiss-Prot
Match: ODPB_PONAB (Pyruvate dehydrogenase E1 component subunit beta, mitochondrial OS=Pongo abelii GN=PDHB PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.910e-47
Identity = 95/165 (57.58%), Postives = 121/165 (73.33%), Query Frame = -1
Query:  266 IRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKIVGLSLKAAEILAKEGISAEVINLRSIRPLDRSTINASVRKTNRLVTVEEGFPQHGVGAEICASVIE-ESFGYLDAPVERIAGADVPMPYAANLERMAVPQVEDIVRAAKR 757
            IRD +PVV LENEL+YG  F    E     F +PIGKAKIER+G  +T+ + S+ VG  L+AA +L+KEG+  EVIN+R+IRP+D  TI ASV KTN LVTVE G+PQ GVGAEICA ++E  +F +LDAP  R+ GADVPMPYA  LE  ++PQV+DI+ A K+
Sbjct:  191 IRDNNPVVVLENELMYGVPFEFPPEAQSKDFLIPIGKAKIERQGTHITVVSHSRPVGHCLEAAAVLSKEGVECEVINMRTIRPMDMETIEASVMKTNHLVTVEGGWPQFGVGAEICARIMEGPAFNFLDAPAVRVTGADVPMPYAKILEDNSIPQVKDIIFAIKK 355          
The following BLAST results are available for this feature:
BLAST of CN186388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
ODPB_PEA7.749e-8591.48Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_ARATH8.866e-8188.76Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_DICDI3.176e-5463.31Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_MOUSE2.604e-4860.00Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_YEAST7.576e-4862.42Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_BOVIN7.576e-4860.61Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_RAT9.894e-4858.79Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_SCHPO2.204e-4757.40Pyruvate dehydrogenase E1 component subunit beta, ... [more]
ODPB_RHIME3.760e-4756.55Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_PONAB4.910e-4757.58Pyruvate dehydrogenase E1 component subunit beta, ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002N04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002N04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186388 ID=CN186388; Name=CN186388; organism=Citrus sinensis; type=EST; length=757bp
AGTAAAACTTGTAGCAGTACATTGATAATCAAACAATAAACCTCTGGTTT
CTTGTTGATTTTCCACATTAACAAGAGAAAACTAAGCCACAAAATTTCCT
GCTGTCATCAACAATCTCCAATTATTTCATGATCAATTCCCCCAAAAAAG
TGTTGAGAACGGGGAAAATGTACAATCCCTCTATTGTTCCAGGATCTGAC
AAAGCTTCAGGGCAGAATCAGTTCATTTATGCTGCAGCAGCCATTGGCAC
AGATCTGTAGCATGCTCTCTTGGCAGCTCGGACAATATCTTCAACCTGTG
GGACAGCCATTCTCTCAAGATTGGCTGCATATGGCATTGGAACATCAGCT
CCAGCAATTCTCTCAACTGGTGCATCAAGATAACCGAAGCTTTCCTCAAT
AACGGATGCACAGATTTCGGCACCAACTCCATGCTGAGGGAACCCTTCTT
CGACTGTTACCAGTCTGTTAGTTTTCCTGACAGAAGCATTGATTGTGGAT
CTATCTAGTGGCCTAATTGACCGCAGATTGATAACCTCAGCACTTATTCC
TTCCTTTGCAAGTATCTCAGCCGCCTTGAGTGAAAGGCCCACAATTTTTG
AGAAAGCTGTAATAGTTACATCCTTTCCTTCTCTCTCAATTTTAGCTTTC
CCAATTGGAAGGCAAAAACTGGAATCAAGAACTTCAGCTGATACCGGGAA
TGACTCACCATATAACAACTCATTTTCAAGAAAAACAACAGGATCCGGAT
CCCTTAT
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