CN186387

Overview
NameCN186387
Unique NameCN186387
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length693
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2453 contig Csv1_Contig2453:162..855. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN186387 vs. ExPASy Swiss-Prot
Match: VATL_PHAAU (V-type proton ATPase 16 kDa proteolipid subunit OS=Phaseolus aureus PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.294e-45
Identity = 102/129 (79.07%), Postives = 102/129 (79.07%), Query Frame = -3 
Query:  305 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRAGQSRAD 691
            SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGY                GMAIGIVGDAGVRANAQQPKLFVGM           LYGLIVGIILSSRAGQSRAD
Sbjct:   36 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 164
[Close]
BLAST of CN186387 vs. ExPASy Swiss-Prot
Match: VATL_MESCR (V-type proton ATPase 16 kDa proteolipid subunit OS=Mesembryanthemum crystallinum GN=VMAC1 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.294e-45
Identity = 102/129 (79.07%), Postives = 102/129 (79.07%), Query Frame = -3 
Query:  305 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRAGQSRAD 691
            SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGY                GMAIGIVGDAGVRANAQQPKLFVGM           LYGLIVGIILSSRAGQSRAD
Sbjct:   37 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
[Close]
BLAST of CN186387 vs. ExPASy Swiss-Prot
Match: VATL_KALDA (V-type proton ATPase 16 kDa proteolipid subunit OS=Kalanchoe daigremontiana PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.294e-45
Identity = 102/129 (79.07%), Postives = 102/129 (79.07%), Query Frame = -3 
Query:  305 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRAGQSRAD 691
            SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGY                GMAIGIVGDAGVRANAQQPKLFVGM           LYGLIVGIILSSRAGQSRAD
Sbjct:   37 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
[Close]
BLAST of CN186387 vs. ExPASy Swiss-Prot
Match: VATL_BETVU (V-type proton ATPase 16 kDa proteolipid subunit OS=Beta vulgaris GN=VMAC1 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.294e-45
Identity = 102/129 (79.07%), Postives = 102/129 (79.07%), Query Frame = -3 
Query:  305 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRAGQSRAD 691
            SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGY                GMAIGIVGDAGVRANAQQPKLFVGM           LYGLIVGIILSSRAGQSRAD
Sbjct:   37 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
[Close]
BLAST of CN186387 vs. ExPASy Swiss-Prot
Match: VATL_GOSHI (V-type proton ATPase 16 kDa proteolipid subunit OS=Gossypium hirsutum GN=CVA16-2 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.675e-45
Identity = 101/129 (78.29%), Postives = 102/129 (79.07%), Query Frame = -3 
Query:  305 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRAGQSRAD 691
            SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGY                GMAIGIVGDAGVRANAQQPKLFVGM           LYGLIVGIILSSRAGQSRA+
Sbjct:   37 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 165
[Close]
BLAST of CN186387 vs. ExPASy Swiss-Prot
Match: VATL4_ARATH (V-type proton ATPase 16 kDa proteolipid subunit c4 OS=Arabidopsis thaliana GN=VHA-C4 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.675e-45
Identity = 101/129 (78.29%), Postives = 102/129 (79.07%), Query Frame = -3 
Query:  305 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRAGQSRAD 691
            SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGY                GMAIGIVGDAGVRANAQQPKLFVGM           LYGLIVGIILSSRAGQSRA+
Sbjct:   38 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 166
[Close]
BLAST of CN186387 vs. ExPASy Swiss-Prot
Match: VATL2_ARATH (V-type proton ATPase 16 kDa proteolipid subunit c2 OS=Arabidopsis thaliana GN=VHA-C2 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.675e-45
Identity = 101/129 (78.29%), Postives = 102/129 (79.07%), Query Frame = -3 
Query:  305 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRAGQSRAD 691
            SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGY                GMAIGIVGDAGVRANAQQPKLFVGM           LYGLIVGIILSSRAGQSRA+
Sbjct:   37 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 165
[Close]
BLAST of CN186387 vs. ExPASy Swiss-Prot
Match: VATL1_ARATH (V-type proton ATPase 16 kDa proteolipid subunit c1/c3/c5 OS=Arabidopsis thaliana GN=VHA-C1 PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.675e-45
Identity = 101/129 (78.29%), Postives = 102/129 (79.07%), Query Frame = -3 
Query:  305 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRAGQSRAD 691
            SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGY                GMAIGIVGDAGVRANAQQPKLFVGM           LYGLIVGIILSSRAGQSRA+
Sbjct:   36 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 164
[Close]
BLAST of CN186387 vs. ExPASy Swiss-Prot
Match: VATL_ORYSJ (V-type proton ATPase 16 kDa proteolipid subunit OS=Oryza sativa subsp. japonica GN=VATP-P1 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 8.717e-45
Identity = 101/129 (78.29%), Postives = 101/129 (78.29%), Query Frame = -3 
Query:  305 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRAGQSRAD 691
            SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAK YYLFDGY                GMAIGIVGDAGVRANAQQPKLFVGM           LYGLIVGIILSSRAGQSRAD
Sbjct:   37 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKPYYLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
[Close]
BLAST of CN186387 vs. ExPASy Swiss-Prot
Match: VATL_ORYSI (V-type proton ATPase 16 kDa proteolipid subunit OS=Oryza sativa subsp. indica GN=VATP-P1 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 8.717e-45
Identity = 101/129 (78.29%), Postives = 101/129 (78.29%), Query Frame = -3 
Query:  305 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXGMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXLYGLIVGIILSSRAGQSRAD 691
            SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAK YYLFDGY                GMAIGIVGDAGVRANAQQPKLFVGM           LYGLIVGIILSSRAGQSRAD
Sbjct:   37 SGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKPYYLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
The following BLAST results are available for this feature:
BLAST of CN186387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
VATL_PHAAU2.294e-4579.07V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_MESCR2.294e-4579.07V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_KALDA2.294e-4579.07V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_BETVU2.294e-4579.07V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_GOSHI6.675e-4578.29V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL4_ARATH6.675e-4578.29V-type proton ATPase 16 kDa proteolipid subunit c4... [more]
VATL2_ARATH6.675e-4578.29V-type proton ATPase 16 kDa proteolipid subunit c2... [more]
VATL1_ARATH6.675e-4578.29V-type proton ATPase 16 kDa proteolipid subunit c1... [more]
VATL_ORYSJ8.717e-4578.29V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_ORYSI8.717e-4578.29V-type proton ATPase 16 kDa proteolipid subunit OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002N04_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002N04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186387 ID=CN186387; Name=CN186387; organism=Citrus sinensis; type=EST; length=693bp
TTTTTTTTTTTTTTTTTAGATATAAGATAATACATGCACTAGATTCCCTT
ATAAAATTCCTTTCTGACAGTTTAAAGTTCTGCAAAACTGCATGGACAGC
TTTGCAAACTTTATTGTTTGAAGAAACTCAATCCTACTACCAGAAACATG
GAGTAACATACAAATGACTCGCAGAACGGCAACTTCCACAAGAAATTTTG
AGCAAGTGCTATCCACTTGAACCTGAGAATAATTTAAAAAAAATCTCGCT
CCCCCAGAGTGACAAGTTATAAAAGAATACTTAGCAATACAAATTCCCTT
CTTAATCTGCTCTGGACTGACCAGCACGTGAAGACAAGATGATACCAACA
ATAAGGCCATACAGTGCAAGGGCTTCAGCGAAAATGAGGATAAGGATCAT
CCCAACAAAGAGTTTTGGCTGCTGTGCATTGGCTCTGACACCAGCGTCAC
CAACGATTCCAATAGCCATTCCAGCAGAAAGCCCGGCAAGACCACAAGCC
AAACCGGAGGAGAGATGAGCATAGCCATCAAAAAGGTAATATGACTTGGC
CTTGGGGTTAATCCCAGTACTGATAATAACAGCAATAATCAAACCATATA
TACCCAAAACACCAGCCATAACAACTGGCACAATCGACTTCATCACCAGC
TCAGGCCTCATAACACCCATTGACGCCACACCAACACCACTCT
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