CN186386

Overview
NameCN186386
Unique NameCN186386
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length746
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5296 contig Csv1_Contig5296:258..1006. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186386 vs. ExPASy Swiss-Prot
Match: ODBA_DICDI (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Dictyostelium discoideum GN=bkdA PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 2.003e-45
Identity = 85/158 (53.80%), Postives = 112/158 (70.89%), Query Frame = 1
Query:  271 VPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACAV 744
            +PC+ ++D  G + K       SKE  +KMY+ M+TL VMDS+LY+ QRQGR SFY+T+ GEEAI+IGSAAAL   D I  QYRE GV +WRG+T+    NQ   N+ D GKGRQMP+H+GS+K+N  TISSP+ TQLPQAVG +Y+ K+  +  C +
Sbjct:   64 IPCYTIMDQEGVVSKPDQDPNFSKEEVIKMYTTMLTLNVMDSILYDVQRQGRISFYMTSFGEEAIHIGSAAALEMSDTIFAQYRETGVFMWRGFTINDIINQCCTNEHDLGKGRQMPMHFGSRKINLQTISSPLTTQLPQAVGSSYAQKLAGEKNCTI 221          
BLAST of CN186386 vs. ExPASy Swiss-Prot
Match: ODBA_RAT (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial (Fragment) OS=Rattus norvegicus GN=Bckdha PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.934e-44
Identity = 82/171 (47.95%), Postives = 115/171 (67.25%), Query Frame = 1
Query:  205 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLK 717
            FPG    +  ++ FI  +    +P +RV+D  G++I  S+   + +E  +K+Y  M  L  MD +LYE+QRQGR SFY+T  GEE  ++GSAAAL   D +  QYRE GVL++R Y L+ F  Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K
Sbjct:   50 FPGASAEFVDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPQEEVLKLYRSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALERTDLVFGQYREAGVLMYRDYPLELFMAQCYGNVSDPGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAK 220          
BLAST of CN186386 vs. ExPASy Swiss-Prot
Match: ODBA_PANTR (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Pan troglodytes GN=BCKDHA PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 6.444e-44
Identity = 83/171 (48.54%), Postives = 115/171 (67.25%), Query Frame = 1
Query:  205 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLK 717
            FPG    +  ++ FI  +    +P +RV+D  G++I  S+   + KE  +K+Y  M  L  MD +LYE+QRQGR SFY+T  GEE  ++GSAAAL   D +  QYRE GVL++R Y L+ F  Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K
Sbjct:   54 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAK 224          
BLAST of CN186386 vs. ExPASy Swiss-Prot
Match: ODBA_MACFA (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Macaca fascicularis GN=BCKDHA PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 6.444e-44
Identity = 83/171 (48.54%), Postives = 115/171 (67.25%), Query Frame = 1
Query:  205 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLK 717
            FPG    +  ++ FI  +    +P +RV+D  G++I  S+   + KE  +K+Y  M  L  MD +LYE+QRQGR SFY+T  GEE  ++GSAAAL   D +  QYRE GVL++R Y L+ F  Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K
Sbjct:   54 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAK 224          
BLAST of CN186386 vs. ExPASy Swiss-Prot
Match: ODBA_HUMAN (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Homo sapiens GN=BCKDHA PE=1 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 6.444e-44
Identity = 83/171 (48.54%), Postives = 115/171 (67.25%), Query Frame = 1
Query:  205 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLK 717
            FPG    +  ++ FI  +    +P +RV+D  G++I  S+   + KE  +K+Y  M  L  MD +LYE+QRQGR SFY+T  GEE  ++GSAAAL   D +  QYRE GVL++R Y L+ F  Q + N +D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K
Sbjct:   54 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAK 224          
BLAST of CN186386 vs. ExPASy Swiss-Prot
Match: ODBA_MOUSE (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Mus musculus GN=Bckdha PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.875e-43
Identity = 81/171 (47.37%), Postives = 114/171 (66.67%), Query Frame = 1
Query:  205 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLK 717
            FPG    +  ++ FI  +    +P +RV+D  G++I  S+   + +E  +K Y  M  L  MD +LYE+QR+GR SFY+T  GEE  ++GSAAAL   D +  QYRE GVL++R Y L+ F +Q + N  D GKGRQMP+HYG K+ +++TISSP+ATQ+PQAVG AY+ K
Sbjct:   51 FPGASAEFVDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPQEEVLKFYRSMTLLNTMDRILYESQREGRISFYMTNYGEEGTHVGSAAALERTDLVFGQYREAGVLMYRDYPLELFMSQCYGNVNDPGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAK 221          
BLAST of CN186386 vs. ExPASy Swiss-Prot
Match: ODBA_BOVIN (2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Bos taurus GN=BCKDHA PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.455e-43
Identity = 81/171 (47.37%), Postives = 114/171 (66.67%), Query Frame = 1
Query:  205 FPGGKVGYTSEMRFIPESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLK 717
            FPG    +  ++ FI  +    +P +RV+D  G++I  S+   + +E  +K Y  M  L  MD +LYE+QRQGR SFY+T  GEE  ++GSAAAL   D +  QYRE GVL++R Y L+ F  Q + N +D GKGRQMP+HYG ++ +++TISSP+ATQ+PQAVG AY+ K
Sbjct:   64 FPGASAEFIDKLEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPQEKVLKFYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGSAAALDDTDLVFGQYREAGVLMYRDYPLELFMAQCYGNVSDLGKGRQMPVHYGCRERHFVTISSPLATQIPQAVGAAYAAK 234          
BLAST of CN186386 vs. ExPASy Swiss-Prot
Match: ODBA_PSEAE (2-oxoisovalerate dehydrogenase subunit alpha OS=Pseudomonas aeruginosa GN=bkdA1 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 9.055e-22
Identity = 63/165 (38.18%), Postives = 94/165 (56.97%), Query Frame = 1
Query:  253 ESSEKRVPCFRVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAV--GVAYSLKMEKKDACA 741
            E+S+      RVLDD+G  + G    Q+S E  ++    M+  ++ D+ +  AQRQ + SFY+  +GEEAI      AL   D   P YR+ G+L+ R Y L     Q+ +N+AD  KGRQ+PI Y SK+  + +IS  +ATQ  QAV  G+A ++K + + A A
Sbjct:   46 ETSDLAYSLVRVLDDDGHAV-GPWNPQLSNEQLLRGMRAMLKTRLFDARMLTAQRQKKLSFYMQCLGEEAIATAHTLALRDGDMCFPTYRQQGILITREYPLVDMICQLLSNEADPLKGRQLPIMYSSKEAGFFSISGNLATQFIQAVGWGMASAIKGDTRIASA 209          
BLAST of CN186386 vs. ExPASy Swiss-Prot
Match: ODBA_BACSU (2-oxoisovalerate dehydrogenase subunit alpha OS=Bacillus subtilis GN=bfmBAA PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.441e-21
Identity = 56/138 (40.58%), Postives = 83/138 (60.14%), Query Frame = 1
Query:  334 VSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSAD-DFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKG-RQMPIHYGSKKLNYITISSPIATQLPQAVGVAYSLKMEKKDACA 741
            ++ + AV MY  M+  + +D  ++   R G+  F ++  G+EA  +G+A AL  + D++LP YR+ GV+L  G T +      FA  AD   G RQMP H+G KK   +T SSP+ TQ+P AVG+A + +MEKKD  A
Sbjct:   11 LTDQEAVDMYRTMLLARKIDERMWLLNRSGKIPFVISCQGQEAAQVGAAFALDREMDYVLPYYRDMGVVLAFGMTAKDLMMSGFAKAADPNSGGRQMPGHFGQKKNRIVTGSSPVTTQVPHAVGIALAGRMEKKDIAA 148          
BLAST of CN186386 vs. ExPASy Swiss-Prot
Match: ODBA_PSEPU (2-oxoisovalerate dehydrogenase subunit alpha OS=Pseudomonas putida GN=bkdA1 PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.230e-20
Identity = 57/155 (36.77%), Postives = 91/155 (58.71%), Query Frame = 1
Query:  283 RVLDDNGELIKGSDFQQVSKEVAVKMYSHMVTLQVMDSVLYEAQRQGRFSFYLTTIGEEAINIGSAAALSADDFILPQYREPGVLLWRGYTLQQFANQVFANKADDGKGRQMPIHYGSKKLNYITISSPIATQLPQAVG--VAYSLKMEKKDACA 741
            RVLD+ G+  +G   + +  ++  +    M+  ++ DS +  AQRQ + SFY+ ++GEEAI  G A AL+  D   P YR+  +L+ R  +L +   Q+ +N+ D  KGRQ+PI Y  ++  + TIS  +ATQ  QAVG  +A ++K + K A A
Sbjct:   56 RVLDEQGDA-QGPWAEDIDPQILRQGMRAMLKTRIFDSRMVVAQRQKKMSFYMQSLGEEAIGSGQALALNRTDMCFPTYRQQSILMARDVSLVEMICQLLSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASA 209          
The following BLAST results are available for this feature:
BLAST of CN186386 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
ODBA_DICDI2.003e-4553.802-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_RAT4.934e-4447.952-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_PANTR6.444e-4448.542-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_MACFA6.444e-4448.542-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_HUMAN6.444e-4448.542-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_MOUSE1.875e-4347.372-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_BOVIN5.455e-4347.372-oxoisovalerate dehydrogenase subunit alpha, mito... [more]
ODBA_PSEAE9.055e-2238.182-oxoisovalerate dehydrogenase subunit alpha OS=Ps... [more]
ODBA_BACSU3.441e-2140.582-oxoisovalerate dehydrogenase subunit alpha OS=Ba... [more]
ODBA_PSEPU2.230e-2036.772-oxoisovalerate dehydrogenase subunit alpha OS=Ps... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002N03_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002N03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186386 ID=CN186386; Name=CN186386; organism=Citrus sinensis; type=EST; length=746bp
GAGGAAAGAGTCGGTTTGCTGAGGATATTAAGTGGCCAGAGTTGTTCATC
CCCATCAACCATATTCCCACTTCAGCAATATAATTCACCATCACTTCCAA
GCAAAACCCTTTTCTCGCCGGGGCGTTCCGAGTCCACCGTTGCTGCCAAT
CAGCTGGATTCTTTGTCTTCCAGTGACAGCGATGATGATCATCAGGTCTT
GGATTTTCCCGGAGGCAAAGTTGGATATACTTCTGAAATGAGGTTCATTC
CTGAGTCTTCAGAGAAAAGAGTGCCTTGTTTTCGAGTTCTTGATGACAAT
GGAGAGCTAATCAAGGGCAGTGATTTTCAACAGGTGAGCAAGGAAGTTGC
TGTAAAGATGTATAGCCATATGGTCACACTGCAGGTAATGGACTCTGTAT
TGTACGAAGCACAAAGGCAAGGGAGATTTTCTTTCTACCTTACAACAATT
GGTGAAGAAGCAATCAACATAGGATCAGCAGCTGCACTCAGCGCCGATGA
TTTTATCTTGCCTCAGTACCGAGAGCCTGGAGTACTCTTATGGCGTGGCT
ACACATTGCAACAATTTGCAAACCAGGTGTTTGCAAACAAGGCTGATGAT
GGGAAAGGCAGACAGATGCCAATTCATTATGGGTCTAAAAAGCTTAACTA
CATCACCATATCGTCACCTATCGCTACACAACTTCCTCAAGCTGTTGGTG
TGGCTTATTCTCTTAAAATGGAGAAAAAGGATGCCTGTGCAGTTGC
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