CN186375

Overview
NameCN186375
Unique NameCN186375
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length815
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1828 contig Csv1_Contig1828:300..1114. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN186375 vs. ExPASy Swiss-Prot
Match: TSJT1_TOBAC (Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.189e-19
Identity = 40/74 (54.05%), Postives = 58/74 (78.38%), Query Frame = -3 
Query:  574 EDIYCLFMGSLNNLCSLIRQYGLSKGTDEAMFVIEAYRTLRDRGPYPADQVVKDLDGSFAFVVYDSKAGTVFTA 795
            +D++C+F G+L+N   L + YGLS+   EAM ++EAY+ LRDR PYP DQV+K+L+G FAF+++DSKA T+F A
Sbjct:   75 DDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAPYPPDQVIKELEGKFAFILFDSKASTLFLA 148
The following BLAST results are available for this feature:
BLAST of CN186375 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TSJT1_TOBAC2.189e-1954.05Stem-specific protein TSJT1 OS=Nicotiana tabacum G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0002M20_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002M20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186375 ID=CN186375; Name=CN186375; organism=Citrus sinensis; type=EST; length=815bp
GACACTTCATTCCATTACACAAGTCAAATTAATTAGAACCCAAACATGAT
TAACCATATATACACAATTGCGGATTGCCCACATAACAAGAAAAACACTC
TATCAAAGAAAAAGGTCAAAAGAACCTCGAAGAGTGAGTAACAACTTTAT
TTTTAACTTAATAGAAGGAAAAATGAAAGGTAGTAGTTTCAGCTTTTGAG
TTGGAAGTAGGCAAATTCACAGCAAGATCAATCAAATTGATCCTTAATTG
ATAAATTAATGTGAGTCCCATTGATTAGTCCAGTCTGCTTCACTTCCCAC
ACGTGGAATGCTGTTGATCCTAGTGTATTTATCAACCTTGAAATTGGCTC
CACACATGACACCTTCACTATCTACTCTTGGCATTGCCCTTATCTTGTTC
ATTGGATGCTCAAAGCTCATCAATCCTCCTTCACTGTGGAACATGCACCC
CTGTGGGAAGGGAGCAAATGACTTGGCACATCCCTCTTTGATGACCTCCA
AGTCATCAGATATGACCACAGATCCATCGGCTGCAATTCCCCAGTACAGC
TTCACTCCCCCATCAGAACCCAGAGCAGTGAAGACCGTGCCGGCCTTGCT
ATCGTAGACCACAAAAGCAAAGCTCCCATCAAGATCCTTGACAACCTGGT
CAGCTGGGTAAGGACCCCGGTCTCTGAGCGTACGATACGCCTCTATCACA
AACATGGCCTCATCGGTTCCCTTTGACAACCCATATTGCCTGATCAGCGA
ACACAAGTTGTTCAAGGACCCCATGAACAGACAGTATATGTCCTCAAACC
CGCAAAACAACCTTC
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