CN186372

Overview
NameCN186372
Unique NameCN186372
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length767
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5845 contig Csv1_Contig5845:135..901. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186372 vs. ExPASy Swiss-Prot
Match: ZIP4_ARATH (Zinc transporter 4, chloroplastic OS=Arabidopsis thaliana GN=ZIP4 PE=2 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 9.396e-70
Identity = 141/255 (55.29%), Postives = 168/255 (65.88%), Query Frame = 1
Query:    1 LKFVAIASILISGIVGVAIPLIGKHRRFLKTDGSLFVATKAFAAGVILATGFVHMLSGGSEALDNPCLPEFPWSKFPFPGFFAMVASLLTLLLDFVGTQYYERKQGLTRATEEQGRVRSVDEDSDSGIVPVLEIKDRNVKVFGEEEGGGMHIVGMXXXXXXXXXXXXXXXXXCEGHVKEAXXXXXXXXXXXXXXXFSDGDEESGVRHVVVSQVLEXXXXXXXXXXXXXXXXXXXPCTIRPLIAALSFHQFFEGFA 765
            LKFVAIASIL++G  GVAIPLIG++RRFL+T+G+LFVA KAFAAGVILATGFVHML+GG+EAL NPCLP+FPWSKFPFPGFFAMVA+L TLL+DF+GTQYYERKQ   +A  E     +     +  +VPV+  +  + KVFGEE+GGG+HIVG+                 C+GH                     + D E+G RHVVVSQ+LE                   PCTIRPLIAALSFHQFFEGFA
Sbjct:   27 LKFVAIASILLAGAAGVAIPLIGRNRRFLQTEGNLFVAAKAFAAGVILATGFVHMLAGGTEALSNPCLPDFPWSKFPFPGFFAMVAALATLLVDFMGTQYYERKQERNQAATE-----AAAGSEEIAVVPVVGERVTDNKVFGEEDGGGIHIVGIRAHAAHHRHSHSNSHGTCDGHA----------HGHSHGHMHGNSDVENGARHVVVSQILELGIVSHSIIIGLSLGVSQSPCTIRPLIAALSFHQFFEGFA 266          
BLAST of CN186372 vs. ExPASy Swiss-Prot
Match: IRT3_ARATH (Fe(2+) transport protein 3, chloroplastic OS=Arabidopsis thaliana GN=IRT3 PE=2 SV=2)

HSP 1 Score: 254.218 bits (648), Expect = 5.701e-67
Identity = 141/260 (54.23%), Postives = 167/260 (64.23%), Query Frame = 1
Query:    1 LKFVAIASILISGIVGVAIPLIGKHRRFLKTDGSLFVATKAFAAGVILATGFVHMLSGGSEALDNPCLPEFPWSKFPFPGFFAMVASLLTLLLDFVGTQYYERKQ--GLTRATEEQGRVRSVDEDSDSGIVPVLEIKDRNVKVFGEEEGGGMHIVGMXXXXXXXXXXXXXXXXXCEGHVK-EAXXXXXXXXXXXXXXXFSDG--DEESGVRHVVVSQVLEXXXXXXXXXXXXXXXXXXXPCTIRPLIAALSFHQFFEGFA 765
            LKFVAIASIL++G  GV IPLIG++RRFL+TDG+LFV  KAFAAGVILATGFVHML+GG+EAL NPCLP+FPWSKFPFPGFFAM+A+L+TL +DF+GTQYYERKQ    + + E  GR     E S   +VP++     + KVFGEE+ GG+HIVG+                 CEGH K +                   G  D  +G RH+VVSQVLE                   PCTIRPLIAALSFHQFFEGFA
Sbjct:   27 LKFVAIASILLAGAAGVTIPLIGRNRRFLQTDGNLFVTAKAFAAGVILATGFVHMLAGGTEALKNPCLPDFPWSKFPFPGFFAMIAALITLFVDFMGTQYYERKQEREASESVEPFGR-----EQSPGIVVPMIGEGTNDGKVFGEEDSGGIHIVGIHAHAAHHRHSHPPGHDSCEGHSKIDIGHAHAHGHGHGHGHGHVHGGLDAVNGARHIVVSQVLELGIVSHSIIIGLSLGVSQSPCTIRPLIAALSFHQFFEGFA 281          
BLAST of CN186372 vs. ExPASy Swiss-Prot
Match: ZIP9_ARATH (Zinc transporter 9 OS=Arabidopsis thaliana GN=ZIP9 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.927e-48
Identity = 121/254 (47.64%), Postives = 142/254 (55.91%), Query Frame = 1
Query:   16 IASILISGIVGVAIPLIGKHRRFLKTDGSLFVATKAFAAGVILATGFVHMLSGGSEALDNPCLPEFPWSKFPFPGFFAMVASLLTLLLDFVGTQYYERKQG--LTRATEEQGRVRSV--DEDSDSGIVPVLEIKDRNVKVFGEEEGGGMHIVGMXXXXXXXXXXXXXXXXXCEGHVKEAXXXXXXXXXXXXXXXFSDGDEESGVRHVVVSQVLEXXXXXXXXXXXXXXXXXXXPCTIRPLIAALSFHQFFEGFA 765
            +ASILISG  GV+IPL+G     L  +G L    KAFAAGVILATGFVHMLSGGS+AL +PCLPEFPW  FPFP FFAMVA+LLTLL DF+ T YYERKQ   + ++ E  G   SV  D   +SG      ++D       +E+GG +HIVGM                  EG    +                 D   +SGVRHVVVSQ+LE                   PCTIRPL+ ALSFHQFFEGFA
Sbjct:    1 MASILISGAAGVSIPLVGT---LLPLNGGLMRGAKAFAAGVILATGFVHMLSGGSKALSDPCLPEFPWKMFPFPEFFAMVAALLTLLADFMITGYYERKQEKMMNQSVESLGTQVSVMSDPGLESGF-----LRD-------QEDGGALHIVGM---RAHAEHHRHSLSMGAEGFEALSKRSGVSGHGHGHSHGHGDVGLDSGVRHVVVSQILEMGIVSHSIIIGISLGVSHSPCTIRPLLLALSFHQFFEGFA 236          
BLAST of CN186372 vs. ExPASy Swiss-Prot
Match: ZIP1_ARATH (Zinc transporter 1 OS=Arabidopsis thaliana GN=ZIP1 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.570e-24
Identity = 87/253 (34.39%), Postives = 113/253 (44.66%), Query Frame = 1
Query:    1 LKFVAIASILISGIVGVAIPLIGKHRRFLKTDGSLFVATKAFAAGVILATGFVHMLSGGSEALDNPCLPEFPWSKFPFPGFFAMVASLLTLLLDFVGTQYYERKQGLTRATEEQGRVRSVDEDSDSGIVPVLEIKDRNVKVFGEEEGGGMHIVGMXXXXXXXXXXXXXXXXXCEGHVKEAXXXXXXXXXXXXXXXFSDGDEESGVRHVVVSQVLEXXXXXXXXXXXXXXXXXXXPCTIRPLIAALSFHQFFEG 759
            LK  +IA +L++G VGV++PLIGK    L+ +  +F   KAFAAGVIL TGFVH+L    E L +PCL +    KFPF GF AM++++ TL++D   T YY+R+      +   G                   K  NV V  EE  G +HI                      GH                    + G  E   R +V SQVLE                     TI+PL+AALSFHQFFEG
Sbjct:   50 LKLGSIALLLVAGGVGVSLPLIGKRIPALQPENDIFFMVKAFAAGVILCTGFVHILPDAFERLSSPCLEDTTAGKFPFAGFVAMLSAMGTLMIDTFATGYYKRQ----HFSNNHGS------------------KQVNVVVDEEEHAGHVHI----------------HTHASHGH--------------------THGSTELIRRRIV-SQVLEIGIVVHSVIIGISLGASQSIDTIKPLMAALSFHQFFEG 243          
BLAST of CN186372 vs. ExPASy Swiss-Prot
Match: ZIP8_ARATH (Probable zinc transporter 8 OS=Arabidopsis thaliana GN=ZIP8 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.968e-24
Identity = 50/104 (48.08%), Postives = 71/104 (68.27%), Query Frame = 1
Query:    1 LKFVAIASILISGIVGVAIPLIGKHRRFLKTDGSLFVATKAFAAGVILATGFVHMLSGGSEALDNPCLPEFPWSKFPFPGFFAMVASLLTLLLDFVGTQYYERK 312
            LK VAI +IL++ ++GVA PL  ++  FL  DG +F+  K FA+G+IL TGF+H+L    E L +PCL + PW KFPF GF AM++ L+TL +D + T  Y +K
Sbjct:   50 LKIVAIVAILVTSMIGVAAPLFSRYVTFLHPDGKIFMIIKCFASGIILGTGFMHVLPDSFEMLSSPCLEDNPWHKFPFTGFVAMLSGLVTLAIDSIATSLYTKK 153          
BLAST of CN186372 vs. ExPASy Swiss-Prot
Match: IRT2_ARATH (Fe(2+) transport protein 2 OS=Arabidopsis thaliana GN=IRT2 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.598e-23
Identity = 72/253 (28.46%), Postives = 108/253 (42.69%), Query Frame = 1
Query:    1 LKFVAIASILISGIVGVAIPLIGKHRRFLKTDGSLFVATKAFAAGVILATGFVHMLSGGSEALDNPCLPEFPWSKFPFPGFFAMVASLLTLLLDFVGTQYYERKQGLTRATEEQGRVRSVDEDSDSGIVPVLEIKDRNVKVFGEEEGGGMHIVGMXXXXXXXXXXXXXXXXXCEGHVKEAXXXXXXXXXXXXXXXFSDGDEESGVRHVVVSQVLEXXXXXXXXXXXXXXXXXXXPCTIRPLIAALSFHQFFEG 759
            LK VAI +IL + ++GV  PL  ++  FL+ DG+ F+  K F++G+IL TGF+H+L    E L + CL + PW KFPF GF AM++ L+TL +D + T  Y  K  +    +E+                           +G ++   +H+VG                    GH                    +  D+   +R+ V++ VLE                    CTI+ LI AL FH  FEG
Sbjct:   46 LKIVAIVAILTTSLIGVTSPLFSRYISFLRPDGNGFMIVKCFSSGIILGTGFMHVLPDSFEMLSSKCLSDNPWHKFPFAGFVAMMSGLVTLAIDSITTSLYTGKNSVGPVPDEE---------------------------YGIDQEKAIHMVG---------------HNHSHGH----------------GVVLATKDDGQLLRYQVIAMVLEVGILFHSVVIGLSLGATNDSCTIKGLIIALCFHHLFEG 240          
BLAST of CN186372 vs. ExPASy Swiss-Prot
Match: ZIP5_ARATH (Zinc transporter 5 OS=Arabidopsis thaliana GN=ZIP5 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.920e-22
Identity = 84/253 (33.20%), Postives = 109/253 (43.08%), Query Frame = 1
Query:    4 KFVAIASILISGIVGVAIPLIGKHRRFLKTDGSLFVATKAFAAGVILATGFVHMLSGGSEALDNPCLPEFPWSKFPFPGFFAMVASLLTLLLDFVGTQYYERKQGLTRATEEQGRVRSVDEDSDSGIVPVLEIKDRNVKVFGEEEGGGMHIVGMXXXXXXXXXXXXXXXXXCEGHVKEAXXXXXXXXXXXXXXXFSDGDEESGV-RHVVVSQVLEXXXXXXXXXXXXXXXXXXXPCTIRPLIAALSFHQFFEG 759
            K  AI S+L +G++GV  PL+GK    LK + + F  TKAFAAGVILATGF+H+L  G E L +PCL    W +FPF GF AMVA++LTL +D   T Y+ +    T      G      E+ D+G                   GGG   +G+                   GH                      G+ +  + R  VV+QVLE                   P T + L AAL FHQ FEG
Sbjct:   49 KIAAIPSVLAAGVIGVMFPLLGKFFPSLKPETTFFFVTKAFAAGVILATGFMHVLPEGYEKLTSPCLKGEAW-EFPFTGFIAMVAAILTLSVDSFATSYFHKAHFKTSKRIGDG------EEQDAG-----------------GGGGGGDELGL--------------HVHAHGHT-------------HGIVGVESGESQVQLHRTRVVAQVLEVGIIVHSVVIGISLGASQSPDTAKALFAALMFHQCFEG 250          
BLAST of CN186372 vs. ExPASy Swiss-Prot
Match: IRT1_ARATH (Fe(2+) transport protein 1 OS=Arabidopsis thaliana GN=IRT1 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 7.295e-22
Identity = 49/107 (45.79%), Postives = 69/107 (64.49%), Query Frame = 1
Query:    1 LKFVAIASILISGIVGVAIPLIGKHRRFLKTDGSLFVATKAFAAGVILATGFVHMLSGGSEALDNPCLPEFPWSKFPFPGFFAMVASLLTLLLDFVGTQYYERKQGL 321
            LK +AI  ILI+ ++GV  PL  ++  FL+ DG++F   K FA+G+IL TGF+H+L    E L + CL E PW KFPF GF AM++ L+TL +D + T  Y  K  +
Sbjct:   43 LKVIAIFVILIASMIGVGAPLFSRNVSFLQPDGNIFTIIKCFASGIILGTGFMHVLPDSFEMLSSICLEENPWHKFPFSGFLAMLSGLITLAIDSMATSLYTSKNAV 149          
BLAST of CN186372 vs. ExPASy Swiss-Prot
Match: ZIP3_ARATH (Zinc transporter 3 OS=Arabidopsis thaliana GN=ZIP3 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.003e-20
Identity = 55/124 (44.35%), Postives = 76/124 (61.29%), Query Frame = 1
Query:    4 KFVAIASILISGIVGVAIPLIGKHRRFLKTDGSLFVATKAFAAGVILATGFVHMLSGGSEALDNPCLPEFPWSKFPFPGFFAMVASLLTLLLDFVGTQ--YYERKQGLTRATEEQGRVRSVDED 369
            K  AI ++LI+GI+GV  PL+GK    L+ +   F  TKAFAAGVILATGF+H+L    E L++PCL    W +FPF GF AM+A++LTL +D   T   Y    +   R ++ +    SVD +
Sbjct:   54 KIAAIPTVLIAGIIGVLFPLLGKVFPSLRPETCFFFVTKAFAAGVILATGFMHVLPEAYEMLNSPCLTSEAW-EFPFTGFIAMIAAILTLSVDTFATSSFYKSHCKASKRVSDGETGESSVDSE 176          
BLAST of CN186372 vs. ExPASy Swiss-Prot
Match: ZIP12_ARATH (Probable zinc transporter 12 OS=Arabidopsis thaliana GN=ZIP12 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.389e-19
Identity = 50/105 (47.62%), Postives = 68/105 (64.76%), Query Frame = 1
Query:    4 KFVAIASILISGIVGVAIPLIGKHRRFLKTDGSLFVATKAFAAGVILATGFVHMLSGGSEALDNPCL-PEFPWSKFPFPGFFAMVASLLTLLLDFVGTQYYERKQ 315
            K +A  SILI+G+ GV +P+ G     LKT+ + F+  KAFAAGVILATGFVH+L   +E+L + CL  E PW  FP  G  AM AS+LT+L++   + Y  R +
Sbjct:   50 KIIAFFSILIAGVFGVCLPIFG-----LKTESNFFMYVKAFAAGVILATGFVHILPDATESLTSSCLGEEPPWGDFPMTGLVAMAASILTMLIESFASGYLNRSR 149          
The following BLAST results are available for this feature:
BLAST of CN186372 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
ZIP4_ARATH9.396e-7055.29Zinc transporter 4, chloroplastic OS=Arabidopsis t... [more]
IRT3_ARATH5.701e-6754.23Fe(2+) transport protein 3, chloroplastic OS=Arabi... [more]
ZIP9_ARATH5.927e-4847.64Zinc transporter 9 OS=Arabidopsis thaliana GN=ZIP9... [more]
ZIP1_ARATH4.570e-2434.39Zinc transporter 1 OS=Arabidopsis thaliana GN=ZIP1... [more]
ZIP8_ARATH5.968e-2448.08Probable zinc transporter 8 OS=Arabidopsis thalian... [more]
IRT2_ARATH6.598e-2328.46Fe(2+) transport protein 2 OS=Arabidopsis thaliana... [more]
ZIP5_ARATH1.920e-2233.20Zinc transporter 5 OS=Arabidopsis thaliana GN=ZIP5... [more]
IRT1_ARATH7.295e-2245.79Fe(2+) transport protein 1 OS=Arabidopsis thaliana... [more]
ZIP3_ARATH4.003e-2044.35Zinc transporter 3 OS=Arabidopsis thaliana GN=ZIP3... [more]
ZIP12_ARATH3.389e-1947.62Probable zinc transporter 12 OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002M18_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002M18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186372 ID=CN186372; Name=CN186372; organism=Citrus sinensis; type=EST; length=767bp
CTCAAATTCGTCGCTATAGCCTCCATCCTCATTTCCGGAATCGTCGGCGT
CGCCATTCCGTTAATTGGGAAGCACCGCCGGTTCTTAAAAACCGACGGCA
GTCTGTTCGTCGCTACTAAAGCGTTTGCGGCCGGTGTCATTTTGGCTACG
GGTTTTGTTCACATGTTATCTGGAGGATCCGAGGCGTTGGATAACCCGTG
TTTGCCCGAATTCCCGTGGTCCAAGTTCCCGTTCCCTGGGTTTTTCGCCA
TGGTGGCTTCGCTTCTGACGCTGCTTCTGGACTTCGTGGGGACACAATAT
TACGAGAGGAAACAGGGCCTGACCCGGGCTACCGAGGAGCAGGGTCGGGT
CCGGTCAGTGGATGAGGACTCGGATTCGGGTATTGTCCCGGTTCTGGAAA
TTAAGGACCGGAACGTGAAGGTCTTCGGTGAGGAGGAAGGTGGAGGCATG
CACATTGTGGGGATGCATGCACACGCGGCTCACCATAGACATAATCATCC
TCATGGGCAACACGCATGTGAGGGGCACGTGAAGGAGGCTGGCCATGAAC
ACGGGCAGGGGCTCGGGCATGGGCATTCTCACGGGTTTAGTGATGGGGAT
GAGGAAAGCGGGGTTCGGCACGTCGTCGTTTCCCAGGTTTTGGAACTTGG
AATTGTTTCACACTCGATTATCATTGGGATATCGCTTGGAGTTTCACACA
GTCCATGTACAATAAGACCCTTGATAGCAGCGTTATCCTTCCATCAATTC
TTTGAAGGATTTGCACT
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