CN186370

Overview
NameCN186370
Unique NameCN186370
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length766
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9208 contig Csv1_Contig9208:369..1134. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186370 vs. ExPASy Swiss-Prot
Match: SDL5A_SOYBN (Dynamin-related protein 5A OS=Glycine max PE=2 SV=1)

HSP 1 Score: 309.301 bits (791), Expect = 1.493e-83
Identity = 152/170 (89.41%), Postives = 163/170 (95.88%), Query Frame = -1
Query:  257 ISETPELKQYPALRAEVGNAAIESLERMRDTSKKATLQLVDMECSYLTVDFFRKLPQDVDKGGNPTHSIFDRYNDSYLRRIGTTVLSYVNMVCASLRNSIPKSIVYCQVREAKRSLLDHFFTEMGKLEQKRLSNLLNEDPAVMERRSALAKRLELYRSAQSEIDAVAWSK 766
            ISET +LKQYP LR EVG AA++SLERMRD SK+ATLQLVDMEC YLTVDFFRKLPQDVDKGGNPTHSIFDRYNDSYLRRIGTT+LSYVNMVCA+LRNSIPKSIVYCQVREAKRSLLDHFFTE+GK+E KRLS+LLNEDPA+MERRSALAKRLELYRSAQ+EIDAVAWSK
Sbjct:  441 ISETLDLKQYPGLRVEVGAAAVDSLERMRDESKRATLQLVDMECGYLTVDFFRKLPQDVDKGGNPTHSIFDRYNDSYLRRIGTTILSYVNMVCATLRNSIPKSIVYCQVREAKRSLLDHFFTELGKMETKRLSSLLNEDPAIMERRSALAKRLELYRSAQAEIDAVAWSK 610          
BLAST of CN186370 vs. ExPASy Swiss-Prot
Match: SDLCA_SOYBN (Dynamin-related protein 12A OS=Glycine max PE=1 SV=1)

HSP 1 Score: 301.212 bits (770), Expect = 4.066e-81
Identity = 148/170 (87.06%), Postives = 162/170 (95.29%), Query Frame = -1
Query:  257 ISETPELKQYPALRAEVGNAAIESLERMRDTSKKATLQLVDMECSYLTVDFFRKLPQDVDKGGNPTHSIFDRYNDSYLRRIGTTVLSYVNMVCASLRNSIPKSIVYCQVREAKRSLLDHFFTEMGKLEQKRLSNLLNEDPAVMERRSALAKRLELYRSAQSEIDAVAWSK 766
            +SET +LKQYP LR EVG A+++SLERMRD SK+ATLQLVDMEC YLTVDFFRKLPQDVDKGGNPTHSI DRYNDSYLRRIGTT+LSYVNMVCA+LR+SIPKSIVYCQVREAKRSLLDHFFTE+GK+E KRLS+LLNEDPA+MERRSALAKRLELYRSAQ+EIDAVAWSK
Sbjct:  441 MSETLDLKQYPGLRVEVGAASVDSLERMRDESKRATLQLVDMECGYLTVDFFRKLPQDVDKGGNPTHSICDRYNDSYLRRIGTTILSYVNMVCATLRHSIPKSIVYCQVREAKRSLLDHFFTELGKMEIKRLSSLLNEDPAIMERRSALAKRLELYRSAQAEIDAVAWSK 610          
BLAST of CN186370 vs. ExPASy Swiss-Prot
Match: DRP1A_ARATH (Dynamin-related protein 1A OS=Arabidopsis thaliana GN=DRP1A PE=1 SV=3)

HSP 1 Score: 298.901 bits (764), Expect = 2.018e-80
Identity = 146/170 (85.88%), Postives = 161/170 (94.71%), Query Frame = -1
Query:  257 ISETPELKQYPALRAEVGNAAIESLERMRDTSKKATLQLVDMECSYLTVDFFRKLPQDVDKGGNPTHSIFDRYNDSYLRRIGTTVLSYVNMVCASLRNSIPKSIVYCQVREAKRSLLDHFFTEMGKLEQKRLSNLLNEDPAVMERRSALAKRLELYRSAQSEIDAVAWSK 766
            ++ET ELKQYPALR EV NAAIESL++MR+ SKKATLQLVDMECSYLTVDFFRKLPQDV+KGGNPTHSIFDRYNDSYLRRIG+ VLSYVNMVCA LRNSIPKSIVYCQVREAKRSLLDHFF E+G ++ KRLS+LLNEDPA+MERRSA++KRLELYR+AQSEIDAVAWSK
Sbjct:  441 VNETVELKQYPALRVEVTNAAIESLDKMREGSKKATLQLVDMECSYLTVDFFRKLPQDVEKGGNPTHSIFDRYNDSYLRRIGSNVLSYVNMVCAGLRNSIPKSIVYCQVREAKRSLLDHFFAELGTMDMKRLSSLLNEDPAIMERRSAISKRLELYRAAQSEIDAVAWSK 610          
BLAST of CN186370 vs. ExPASy Swiss-Prot
Match: DRP1B_ARATH (Dynamin-related protein 1B OS=Arabidopsis thaliana GN=DRP1B PE=2 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 2.921e-71
Identity = 131/170 (77.06%), Postives = 151/170 (88.82%), Query Frame = -1
Query:  257 ISETPELKQYPALRAEVGNAAIESLERMRDTSKKATLQLVDMECSYLTVDFFRKLPQDVDKGGNPTHSIFDRYNDSYLRRIGTTVLSYVNMVCASLRNSIPKSIVYCQVREAKRSLLDHFFTEMGKLEQKRLSNLLNEDPAVMERRSALAKRLELYRSAQSEIDAVAWSK 766
            + ET ELKQYP LR EV  AA++SL+RMRD S+KATL LVDME  YLTV+FFRKLPQD +KGGNPTHSIFDRYND+YLRRIG+ VLSYVNMVCA LRNSIPKSIVYCQVREAKRSLLD FFTE+G+ E  +LS LL+EDPAV +RR+++AKRLELYRSAQ++I+AVAWSK
Sbjct:  441 MGETSELKQYPTLRVEVSGAAVDSLDRMRDESRKATLLLVDMESGYLTVEFFRKLPQDSEKGGNPTHSIFDRYNDAYLRRIGSNVLSYVNMVCAGLRNSIPKSIVYCQVREAKRSLLDIFFTELGQKEMSKLSKLLDEDPAVQQRRTSIAKRLELYRSAQTDIEAVAWSK 610          
BLAST of CN186370 vs. ExPASy Swiss-Prot
Match: DRP1C_ARATH (Dynamin-related protein 1C OS=Arabidopsis thaliana GN=DRP1C PE=1 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 2.037e-48
Identity = 96/172 (55.81%), Postives = 134/172 (77.91%), Query Frame = -1
Query:  263 ISETPELKQYPALRAEVGNAAIESLERMRDTSKKATLQLVDMECSYLTVDFFRKLPQDVDKGG-NPTHSIF---DRYNDSYLRRIGTTVLSYVNMVCASLRNSIPKSIVYCQVREAKRSLLDHFFTEMGKLEQKRLSNLLNEDPAVMERRSALAKRLELYRSAQSEIDAVAW 766
            ISET ELK++P L +++  AA E+LER RD S+K  L+LVDME SYLTV+FFRKL  + +K   NP ++     D Y+D++ R+IG+ V +Y+NMVC +LRNS+PK++VYCQVREAKRSLL+ F+ ++G+ E+++L  +L+EDP +MERR  LAKRLELY+ A+ +IDAVAW
Sbjct:  442 ISETEELKRFPTLASDIAAAANEALERFRDESRKTVLRLVDMESSYLTVEFFRKLHLEPEKEKPNPRNAPAPNADPYSDNHFRKIGSNVSAYINMVCDTLRNSLPKAVVYCQVREAKRSLLNFFYAQVGRKEKEKLGAMLDEDPQLMERRGTLAKRLELYKQARDDIDAVAW 613          
BLAST of CN186370 vs. ExPASy Swiss-Prot
Match: DRP1E_ARATH (Dynamin-related protein 1E OS=Arabidopsis thaliana GN=DRP1E PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.017e-47
Identity = 92/176 (52.27%), Postives = 132/176 (75.00%), Query Frame = -1
Query:  263 ISETPELKQYPALRAEVGNAAIESLERMRDTSKKATLQLVDMECSYLTVDFFRKLPQDVDKG--------GNPTHSIFDRYNDSYLRRIGTTVLSYVNMVCASLRNSIPKSIVYCQVREAKRSLLDHFFTEMGKLEQKRLSNLLNEDPAVMERRSALAKRLELYRSAQSEIDAVAW 766
            ISET ELK++P+L+ E+  AA  SLE+ R+ SKK+ ++LVDME +YLT +FFRKLPQ++++          +P+ +  D+Y D + RRI + V +YVNMV  +LRN+IPK+ VYCQVR+AK +LL++F++++ K E K+L  LL+EDPA+M+RR   AKRLELY+ A+ EIDAVAW
Sbjct:  447 ISETEELKRFPSLQVELAAAANSSLEKFREESKKSVIRLVDMESAYLTAEFFRKLPQEIERPVTNSKNQTASPSSATLDQYGDGHFRRIASNVSAYVNMVSDTLRNTIPKACVYCQVRQAKLALLNYFYSQISKREGKQLGQLLDEDPALMDRRLECAKRLELYKKARDEIDAVAW 622          
BLAST of CN186370 vs. ExPASy Swiss-Prot
Match: DRP1D_ARATH (Dynamin-related protein 1D OS=Arabidopsis thaliana GN=DRP1D PE=2 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 5.373e-41
Identity = 86/170 (50.59%), Postives = 124/170 (72.94%), Query Frame = -1
Query:  263 ISETPELKQYPALRAEVGNAAIESLERMRDTSKKATLQLVDMECSYLTVDFFRKLPQDVDKGG--NPTHSIFDRYNDSYLRRIGTTVLSYVNMVCASLRNSIPKSIVYCQVREAKRSLLDHFFTEMGKLEQKRLSNLLNEDPAVMERRSALAKRLELYRSAQSEIDAVAW 766
            I+ET ELK++P+L+ E+  AA  SL++ R+ S K+ L+LVDME SYLTVDFFRKL  +       +PT +I D+Y D + R+I + V +Y+ MV  +L N+IPK++V+CQVR+AK SLL++F+ ++ + + KRL  LL+E+PA+MERR   AKRLELY+ A+ EIDA  W
Sbjct:  442 IAETEELKRFPSLQIELVAAANSSLDKFREESMKSVLRLVDMESSYLTVDFFRKLHVESQNMSLSSPTSAI-DQYGDGHFRKIASNVAAYIKMVAETLVNTIPKAVVHCQVRQAKLSLLNYFYAQISQSQGKRLGQLLDENPALMERRMQCAKRLELYKKARDEIDAAVW 610          
The following BLAST results are available for this feature:
BLAST of CN186370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
SDL5A_SOYBN1.493e-8389.41Dynamin-related protein 5A OS=Glycine max PE=2 SV=... [more]
SDLCA_SOYBN4.066e-8187.06Dynamin-related protein 12A OS=Glycine max PE=1 SV... [more]
DRP1A_ARATH2.018e-8085.88Dynamin-related protein 1A OS=Arabidopsis thaliana... [more]
DRP1B_ARATH2.921e-7177.06Dynamin-related protein 1B OS=Arabidopsis thaliana... [more]
DRP1C_ARATH2.037e-4855.81Dynamin-related protein 1C OS=Arabidopsis thaliana... [more]
DRP1E_ARATH5.017e-4752.27Dynamin-related protein 1E OS=Arabidopsis thaliana... [more]
DRP1D_ARATH5.373e-4150.59Dynamin-related protein 1D OS=Arabidopsis thaliana... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0002M17_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002M17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186370 ID=CN186370; Name=CN186370; organism=Citrus sinensis; type=EST; length=766bp
TTTTTTTTTTTTTAAAGCCGAAAAATTCGTATATTATAGGCAACACATAA
GAGTAGCATATGAAAACAACATAACATTTAATAATATCACACAATAAAAT
ATGCCTAATCACACCTTGACTACTAGTTAGGGTATAGAAATATAATGAAA
TATCCCGCCGCTTTCTCCCCTGCATGGCTAGTCATAATTGAAAGAATGAC
AGTCACCATCAAGCCAAAATTCGTGAGCTGAAATGGACTGGTAAAATGTT
GAACTACTTTGACCAAGCAACTGCATCAATTTCTGATTGTGCACTCCTGT
ATAACTCCAACCTTTTTGCAAGGGCAGATCGTCGCTCCATGACTGCCGGA
TCTTCATTCAACAGGTTTGACAATCGTTTTTGCTCCAATTTACCCATTTC
AGTGAAGAAATGATCAAGTAGGCTTCGTTTGGCCTCACGAACTTGACAAT
AAACGATGGACTTAGGAATTGAGTTCCGCAGACTTGCACAGACCATATTG
ACATAAGACAAGACCGTGGTTCCAATTCTCCTTAGATACGAATCATTGTA
TCTGTCAAAAATTGAATGTGTAGGATTGCCACCCTTGTCAACATCCTGAG
GAAGCTTCCGGAAGAAATCAACTGTCAGATAACTGCACTCCATATCAACA
AGCTGAAGTGTAGCTTTTTTGCTTGTGTCCCTCATTCTCTCAAGAGACTC
GATAGCTGCATTTCCAACTTCTGCTCGGAGAGCAGGATACTGCTTTAATT
CAGGGGTTTCACTGAT
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