CX674972

Overview
NameCX674972
Unique NameCX674972
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674972 vs. ExPASy Swiss-Prot
Match: SYP31_ARATH (Syntaxin-31 OS=Arabidopsis thaliana GN=SYP31 PE=1 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.523e-58
Identity = 116/173 (67.05%), Postives = 137/173 (79.19%), Query Frame = 1
Query:   82 MASPYRDRTAEFRSLSQTLKKIGGTTTAVDQPNNSFVSPKPPNPASSRSEFNKKASCIGLGIHEASQKIARLAKLAKRSSMFDDPIVEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRKQIFFCK 600
            M S +RDRT E  SLSQTLKKIG   + V Q  +   S K  +P S   EFNKKAS IGLGI E SQKI RLAKLAK+S++F+D  VEIQELT LI++DIT LNMALSDLQTLQN+E+ +GNYSQD+V H T VCDDLK++LMGATK+LQDVLTTR+EN+KAHE+RKQ+F  K
Sbjct:    1 MGSTFRDRTVELHSLSQTLKKIGAIPS-VHQDEDDPASSKRSSPGS---EFNKKASRIGLGIKETSQKITRLAKLAKQSTIFNDRTVEIQELTVLIRNDITGLNMALSDLQTLQNMELADGNYSQDQVGHYTAVCDDLKTRLMGATKQLQDVLTTRSENMKAHENRKQLFSTK 169          

HSP 2 Score: 32.3426 bits (72), Expect = 1.523e-58
Identity = 14/28 (50.00%), Postives = 18/28 (64.29%), Query Frame = 2
Query:  584 KFFSANALRDSPFRQHAQPVTEPPPWSS 667
            + FS     DSP + +A+ V EPPPWSS
Sbjct:  164 QLFSTKNAVDSPPQNNAKSVPEPPPWSS 191          
BLAST of CX674972 vs. ExPASy Swiss-Prot
Match: SYP32_ARATH (Syntaxin-32 OS=Arabidopsis thaliana GN=SYP32 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.406e-37
Identity = 90/172 (52.33%), Postives = 119/172 (69.19%), Query Frame = 1
Query:   88 SPYRDRTAEFRSLSQTLKK-IGGTTTAVDQP-NNSFVSPKPPNPASSRSEFNKKASCIGLGIHEASQKIARLAKLAKRSSMFDDPIVEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDR--VVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRKQIF 591
            S YRDR+ EF  + +TL++ I     A + P  N+           ++SEFNK+AS IGL I++ SQK+++LAKLAKR+S+FDDP  EIQELT +IK +I+ALN AL DLQ  ++ +  EGN S+DR    HS TV DDLK +LM  TKE +DVLT RTEN+K HESR+Q+F
Sbjct:    8 SSYRDRSDEFFKIVETLRRSIAPAPAANNVPYGNNRNDGARREDLINKSEFNKRASHIGLAINQTSQKLSKLAKLAKRTSVFDDPTQEIQELTVVIKQEISALNSALVDLQLFRSSQNDEGNNSRDRDKSTHSATVVDDLKYRLMDTTKEFKDVLTMRTENMKVHESRRQLF 179          
BLAST of CX674972 vs. ExPASy Swiss-Prot
Match: STX5_MOUSE (Syntaxin-5 OS=Mus musculus GN=Stx5 PE=2 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 1.616e-17
Identity = 68/197 (34.52%), Postives = 101/197 (51.27%), Query Frame = 1
Query:   22 ISRTTNSFPSCTVRSDTICLMASP-----YRDRTAEFRSLSQTLKKIGGTTTAVDQPNNSFVSPKPPNPASSR-SEFNKKASCIGLGIHEASQKIARLAKLAKRSSMFDDPIVEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDRV-VHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRKQIF 591
            IS +++S P  T     + L+ SP      RDRT EF+S  ++L+             N   + KP   A+ + SEF   A  IG  +     K+ +L  LAKR S+FDD  VEI+ELT +IK DI +LN  ++ LQ        +G+ S   +  HS T+   L+SKL   + + + VL  RTEN+K   +R++ F
Sbjct:   32 ISSSSDSTPLPT----PVALVPSPPDTMSCRDRTQEFQSACKSLQS----------RQNGIQTSKPALHAARQCSEFTLMARRIGKDLSNTFAKLEKLTILAKRKSLFDDKAVEIEELTYIIKQDINSLNKQIAQLQDFVR---AKGSQSGRHLQTHSNTIVVSLQSKLASMSNDFKSVLEVRTENLKQQRNRREQF 211          
BLAST of CX674972 vs. ExPASy Swiss-Prot
Match: STX5_BOVIN (Syntaxin-5 OS=Bos taurus GN=STX5 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.616e-17
Identity = 62/167 (37.13%), Postives = 86/167 (51.50%), Query Frame = 1
Query:   97 RDRTAEFRSLSQTLKKIGGTTTAVDQPNNSFVSPKPPNPA-SSRSEFNKKASCIGLGIHEASQKIARLAKLAKRSSMFDDPIVEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDRV-VHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRKQIF 591
            RDRT EF S  ++L+             N   + KP   A   RSEF   A  IG  +     K+ +L  LAKR S+FDD  VEI+ELT +IK DI +LN  ++ LQ        +G+ S   +  HS T+   L+SKL   + + + VL  RTEN+K   SR++ F
Sbjct:   58 RDRTQEFLSACKSLQS----------RQNGIQANKPALRAVRQRSEFTLMAKRIGKDLSNTFAKLEKLTILAKRKSLFDDKAVEIEELTYIIKQDINSLNKQIAQLQDFVR---AKGSQSGRHLQTHSNTIVVSLQSKLASMSNDFKSVLEVRTENLKQQRSRREQF 211          
BLAST of CX674972 vs. ExPASy Swiss-Prot
Match: STX5_HUMAN (Syntaxin-5 OS=Homo sapiens GN=STX5 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 2.110e-17
Identity = 62/167 (37.13%), Postives = 86/167 (51.50%), Query Frame = 1
Query:   97 RDRTAEFRSLSQTLKKIGGTTTAVDQPNNSFVSPKPPNPA-SSRSEFNKKASCIGLGIHEASQKIARLAKLAKRSSMFDDPIVEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDRV-VHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRKQIF 591
            RDRT EF S  ++L+             N   + KP   A   RSEF   A  IG  +     K+ +L  LAKR S+FDD  VEI+ELT +IK DI +LN  ++ LQ        +G+ S   +  HS T+   L+SKL   + + + VL  RTEN+K   SR++ F
Sbjct:   58 RDRTQEFLSACKSLQT----------RQNGIQTNKPALRAVRQRSEFTLMAKRIGKDLSNTFAKLEKLTILAKRKSLFDDKAVEIEELTYIIKQDINSLNKQIAQLQDFVR---AKGSQSGRHLQTHSNTIVVSLQSKLASMSNDFKSVLEVRTENLKQQRSRREQF 211          
BLAST of CX674972 vs. ExPASy Swiss-Prot
Match: SED5_SCHPO (Integral membrane protein sed5 OS=Schizosaccharomyces pombe GN=sed5 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.599e-17
Identity = 60/168 (35.71%), Postives = 97/168 (57.74%), Query Frame = 1
Query:   94 YRDRTAEFRSLSQTLKKIGGTTTAVDQPNNSFVSPKPPNPASSRSEFNKKASCIGLGIHEASQKIARLAKLAKRSSMFDDPIVEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDRVV--HSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRKQIF 591
            ++DRTAEF++     +    TTTA     N  V   P      +SEF + A  I   I++  +K+ +L++LAKR ++FDD  VEIQELT  IK  +++LN   SD+ +LQ  ++V+GN ++   +  HS  V   L++ L   +   +D+L  RT+N+KA ++R + F
Sbjct:    3 FQDRTAEFQACVTKTRSRLRTTTA-----NQAVGG-PDQTKHQKSEFTRIAQKIANQINQTGEKLQKLSQLAKRKTLFDDRPVEIQELTFQIKQSLSSLN---SDIASLQ--QVVKGNRNKPAQMNQHSENVVVSLQNSLANTSMTFKDILEIRTQNMKASQNRTEKF 159          
BLAST of CX674972 vs. ExPASy Swiss-Prot
Match: STX5_RAT (Syntaxin-5 OS=Rattus norvegicus GN=Stx5 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 8.019e-17
Identity = 67/205 (32.68%), Postives = 101/205 (49.27%), Query Frame = 1
Query:   22 ISRTTNSFPSCTVRSDT--------ICLMASP-----YRDRTAEFRSLSQTLKKIGGTTTAVDQPNNSFVSPKPPNPASSR-SEFNKKASCIGLGIHEASQKIARLAKLAKRSSMFDDPIVEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDRV-VHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRKQIF 591
            +S+T    P+  + S +        + L+ SP      RDRT EF S  ++L+             N   + KP   A+ + SEF   A  IG  +     K+ +L  LAKR S+FDD  VEI+ELT +IK DI +LN  ++ LQ        +G+ S   +  HS T+   L+SKL   + + + VL  RTEN+K   +R++ F
Sbjct:   20 LSKTQVLSPATAINSSSDIAPLPTPVALVPSPPDTMSCRDRTQEFLSACKSLQS----------RQNGIQTNKPALHATRQCSEFTLMARRIGKDLSNTFAKLEKLTILAKRKSLFDDKAVEIEELTYIIKQDINSLNKQIAQLQDFVR---AKGSQSGRHLQTHSNTIVVSLQSKLASMSNDFKSVLEVRTENLKQQRNRREQF 211          
BLAST of CX674972 vs. ExPASy Swiss-Prot
Match: STX5_DROME (Syntaxin-5 OS=Drosophila melanogaster GN=Syx5 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 5.198e-16
Identity = 63/182 (34.62%), Postives = 93/182 (51.10%), Query Frame = 1
Query:   46 PSCTVRSDTICLMASPYRDRTAEFRSLSQTLKKIGGTTTAVDQPNNSFVSPKPPNPASSRSEFNKKASCIGLGIHEASQKIARLAKLAKRSSMFDDPIVEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRKQIF 591
            P  T     I +MA+  RDRT EF +  ++L+     T AV+        P+      S SEF   A  IG  I     K+ +L  LAK+ S+FDD   EIQELT +IK D+ ALN  ++ LQ +   +    N  +  V HS+ +   L+SKL   + + + +L  RTEN+K  ++R+  F
Sbjct:  146 PQETEPEPEIFVMAA--RDRTGEFANAIRSLQA-RNITRAVN-----IRDPRKAKQVQSYSEFMMVARFIGKNIASTYAKLEKLTMLAKKKSLFDDRPQEIQELTYIIKGDLNALNQQIARLQDISKDQRRHTN-GKHLVSHSSNMVLALQSKLASMSTDFKQILEVRTENLKQQKTRRDQF 318          
BLAST of CX674972 vs. ExPASy Swiss-Prot
Match: STX3_CAEEL (Putative syntaxin-3 OS=Caenorhabditis elegans GN=syn-3 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 50/171 (29.24%), Postives = 83/171 (48.54%), Query Frame = 1
Query:   79 LMASPYRDRTAEFRSLSQTLKKIGGTTTAVDQPNNSFVSPKPPNPASSRSEFNKKASCIGLGIHEASQKIARLAKLAKRSSMFDDPIVEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQDRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRKQIF 591
            ++  P RDRT+EFR+ +++ +          QP +  +        S   +FN+ A  IG  + +   K+ +LA+ AK+ S +++   +I  L++++K DIT LN  +  LQ         GN       H   V   L+SKL    K+ Q VL   TE +KA ++R+  F
Sbjct:  104 IITMPSRDRTSEFRATAKSYEMKAAANGIRPQPKHEML--------SESVQFNQLAKRIGKELSQTCAKMEKLAEYAKKKSCYEER-SQIDHLSSIVKSDITGLNKQIGQLQEFSKRR--AGNMKNQNSGHIQLVVVGLQSKLANVGKDYQSVLEISTETMKAEKNRRDKF 263          
BLAST of CX674972 vs. ExPASy Swiss-Prot
Match: SED5_YEAST (Integral membrane protein SED5 OS=Saccharomyces cerevisiae GN=SED5 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 58/175 (33.14%), Postives = 85/175 (48.57%), Query Frame = 1
Query:   97 RDRTAEFRSLSQTLKKIGGT------TTAVDQPNNSFVSPKPPNPASSRSEFNKKASCIGLGIHEASQKIARLAKLAKRSSMFDDPIVEIQELTALIKDDITALNMALSDLQTLQNLEIVEGNYSQ------DRVVHSTTVCDDLKSKLMGATKELQDVLTTRTENIKAHESRKQ 585
            +DRT+EF+    + KK              ++ + +F +    N   S SEF KKAS I   I   +Q +++LA LAKR  MF+D  VEI EL+ LIK  I A+  +L  L  L+  + V GN S         V HS  V + L +++   +   +DVL  R     A++ R Q
Sbjct:    4 KDRTSEFQQSVLSYKKRNKNFREQQRERLQEKESENFANNTTGN-GKSVSEFQKKASGIAHEISSTAQLLSKLAVLAKRKPMFNDNPVEIAELSFLIKRKIYAIEQSLVQLSQLKKTD-VNGNTSNQSSKQPSAVQHSKNVVNLLNTQMKNISGSFKDVLEERQRLEMANKDRWQ 176          
The following BLAST results are available for this feature:
BLAST of CX674972 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
SYP31_ARATH1.523e-5867.05Syntaxin-31 OS=Arabidopsis thaliana GN=SYP31 PE=1 ... [more]
SYP32_ARATH1.406e-3752.33Syntaxin-32 OS=Arabidopsis thaliana GN=SYP32 PE=2 ... [more]
STX5_MOUSE1.616e-1734.52Syntaxin-5 OS=Mus musculus GN=Stx5 PE=2 SV=3[more]
STX5_BOVIN1.616e-1737.13Syntaxin-5 OS=Bos taurus GN=STX5 PE=2 SV=1[more]
STX5_HUMAN2.110e-1737.13Syntaxin-5 OS=Homo sapiens GN=STX5 PE=1 SV=2[more]
SED5_SCHPO3.599e-1735.71Integral membrane protein sed5 OS=Schizosaccharomy... [more]
STX5_RAT8.019e-1732.68Syntaxin-5 OS=Rattus norvegicus GN=Stx5 PE=1 SV=2[more]
STX5_DROME5.198e-1634.62Syntaxin-5 OS=Drosophila melanogaster GN=Syx5 PE=2... [more]
STX3_CAEEL2.414e-1329.24Putative syntaxin-3 OS=Caenorhabditis elegans GN=s... [more]
SED5_YEAST6.575e-1133.14Integral membrane protein SED5 OS=Saccharomyces ce... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_9G10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-9G10-M19-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674972 ID=CX674972; Name=CX674972; organism=Citrus sinensis; type=EST; length=707bp
GGTATCTTTACTTAATTTTATATTTCTCGCACAACGAATTCATTCCCATC
GTGCACCGTCCGATCAGACACCATTTGCCTAATGGCGTCCCCGTACAGAG
ATCGGACGGCTGAGTTCCGATCTCTGTCCCAAACTCTGAAGAAGATCGGA
GGCACCACGACAGCCGTAGATCAACCAAACAACTCCTTCGTTTCCCCGAA
ACCTCCGAATCCAGCCTCTTCTAGATCCGAATTCAACAAGAAGGCTTCTT
GCATCGGGTTGGGCATCCATGAAGCCTCCCAAAAAATCGCTAGACTTGCC
AAATTGGCAAAAAGGTCATCGATGTTTGATGATCCAATTGTGGAGATACA
GGAGTTGACTGCTTTGATAAAGGATGACATTACAGCTCTCAACATGGCTC
TTTCAGATTTGCAAACCCTTCAAAACTTGGAGATTGTGGAGGGAAATTAT
TCTCAGGACAGAGTTGTGCATTCGACTACTGTCTGTGATGACTTGAAGAG
CAAGCTCATGGGTGCTACTAAAGAACTTCAAGATGTTTTAACCACAAGAA
CTGAGAATATAAAAGCTCATGAAAGCAGGAAACAAATTTTTTTCTGCAAA
TGCATTGAGAGATAGCCCATTTAGACAGCATGCACAACCTGTTACTGAGC
CCCCACCTTGGTCAAGTCCAGTAAAAGCATCTGAGAGTTCACAACCATCA
GCATTGC
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