CX674971

Overview
NameCX674971
Unique NameCX674971
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length750
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX674971 vs. ExPASy Swiss-Prot
Match: SYP31_ARATH (Syntaxin-31 OS=Arabidopsis thaliana GN=SYP31 PE=1 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 1.081e-59
Identity = 118/173 (68.21%), Postives = 134/173 (77.46%), Query Frame = -3
Query:  203 KFFSANALRDSPFRQHAQPVTEPPPWSSPVKASESSQPSALPP--GGVQVGNQLRRRPAVDNAPSHHMEMSMLQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFLTVFMFFVA 715
            + FS     DSP + +A+ V EPPPWSS      + Q   LPP   G   G+QLRRR A++NAPS  MEMS+LQQ VP+QENYSQSRAVALH+VES ITEL GIF  LATMV QQGELAIRIDDNMDESL NVEGAR+ALL+HL +ISSNRWLM+KIFAVII FL VF+FFVA
Sbjct:  164 QLFSTKNAVDSPPQNNAKSVPEPPPWSSSSNPFGNLQQPLLPPLNTGAPPGSQLRRRSAIENAPSQQMEMSLLQQTVPKQENYSQSRAVALHSVESRITELSGIFPQLATMVTQQGELAIRIDDNMDESLVNVEGARSALLQHLTRISSNRWLMMKIFAVIILFLIVFLFFVA 336          

HSP 2 Score: 28.1054 bits (61), Expect = 1.081e-59
Identity = 11/17 (64.71%), Postives = 15/17 (88.24%), Query Frame = -2
Query:  699 TENIKAHESRKQIFFCK 749
            +EN+KAHE+RKQ+F  K
Sbjct:  153 SENMKAHENRKQLFSTK 169          
BLAST of CX674971 vs. ExPASy Swiss-Prot
Match: SYP32_ARATH (Syntaxin-32 OS=Arabidopsis thaliana GN=SYP32 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.473e-35
Identity = 91/187 (48.66%), Postives = 120/187 (64.17%), Query Frame = -3
Query:  203 KLMKAGNKFFSANALRDS--PF-RQH------AQPVTEPPPWSSPVKASESSQPSALPPGGVQVGNQLRRRPAVDNAPSHHMEMSMLQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFLTVFMFFVA 736
            K+ ++  + FS+NA ++S  PF RQ       A   + P PW++   +S SSQ     PG  +    L++        S   +    QQ+VP Q+ Y Q RA ALH VESTI EL  IFT LATMV+QQGE+AIRID NM+++LANVEGA++ L R+LN ISSNRWLM+KIF V+I FL +F+FFVA
Sbjct:  170 KVHESRRQLFSSNASKESTNPFVRQRPLAAKAAASESVPLPWANG-SSSSSSQLVPWKPGEGESSPLLQQ--------SQQQQQQQQQQMVPLQDTYMQGRAEALHTVESTIHELSSIFTQLATMVSQQGEIAIRIDQNMEDTLANVEGAQSQLARYLNSISSNRWLMMKIFFVLIAFLMIFLFFVA 347          
BLAST of CX674971 vs. ExPASy Swiss-Prot
Match: STX5_BOVIN (Syntaxin-5 OS=Bos taurus GN=STX5 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.833e-20
Identity = 66/180 (36.67%), Postives = 97/180 (53.89%), Query Frame = -3
Query:  203 KLMKAGNKFFSANALRDSPFRQHAQPVTEPPPWSSPVKASESSQPSALPPGGVQVGNQLRRRP--AVDNAPSHHMEMSMLQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFLTVFMFFVA 736
            KL    N F S   +R    +Q  Q         +PV A   + P+ L  G V +G + R     A+D   S     S   Q++  Q++Y QSRA  + N+ESTI ELG IF  LA MV +Q E   RID+N+  +  +VE A + +L++   ++SNRWLM+KIF ++I F  +F+ F+A
Sbjct:  182 KLASMSNDFKSVLEVRTENLKQ--QRSRREQFSRAPVSALPLA-PNHLGGGAVVLGAESRASGDVAIDMMDSR---TSQQLQLIDEQDSYIQSRADTMQNIESTIVELGSIFQQLAHMVKEQEETIQRIDENVLGAQLDVEAAHSEILKYFQSVTSNRWLMVKIFLILIVFFIIFVVFLA 355          
BLAST of CX674971 vs. ExPASy Swiss-Prot
Match: STX5_DROME (Syntaxin-5 OS=Drosophila melanogaster GN=Syx5 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 5.006e-20
Identity = 46/93 (49.46%), Postives = 63/93 (67.74%), Query Frame = -3
Query:  203 ENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFLTVFMFFVA 481
            +NY Q RA  + N+ESTI ELGGIF  LA MV +Q E+  RID N+ ++  N+E A   +L++   +S NRWLMIKIF V+IFF   F+ F++
Sbjct:  375 DNYVQQRAETMQNIESTIVELGGIFQQLAHMVKEQEEIVERIDTNVADAELNIEAAHGEILKYFQSVSKNRWLMIKIFGVLIFFFLFFVVFMS 467          
BLAST of CX674971 vs. ExPASy Swiss-Prot
Match: STX5_RAT (Syntaxin-5 OS=Rattus norvegicus GN=Stx5 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 6.538e-20
Identity = 64/180 (35.56%), Postives = 97/180 (53.89%), Query Frame = -3
Query:  203 KLMKAGNKFFSANALRDSPFRQHAQPVTEPPPWSSPVKASESSQPSALPPGGVQVGNQLR--RRPAVDNAPSHHMEMSMLQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFLTVFMFFVA 736
            KL    N F S   +R    +Q      +     +PV A   + P+ L  G + +G + R  R  A+D         S   Q++  Q++Y QSRA  + N+ESTI ELG IF  LA MV +Q E   RID+N+  +  +VE A + +L++   ++SNRWLM+KIF ++I F  +F+ F+A
Sbjct:  182 KLASMSNDFKSVLEVRTENLKQQRNRREQFS--RAPVSALPLA-PNNLGGGPIVLGGESRASRDVAIDMMDPR---TSQQLQLIDEQDSYIQSRADTMQNIESTIVELGSIFQQLAHMVKEQEETIQRIDENVLGAQLDVEAAHSEILKYFQSVTSNRWLMVKIFLILIVFFIIFVVFLA 355          
BLAST of CX674971 vs. ExPASy Swiss-Prot
Match: STX5_HUMAN (Syntaxin-5 OS=Homo sapiens GN=STX5 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 6.538e-20
Identity = 65/180 (36.11%), Postives = 97/180 (53.89%), Query Frame = -3
Query:  203 KLMKAGNKFFSANALRDSPFRQHAQPVTEPPPWSSPVKASESSQPSALPPGGVQVG--NQLRRRPAVDNAPSHHMEMSMLQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFLTVFMFFVA 736
            KL    N F S   +R    +Q  Q         +PV A   + P+ L  G V +G  +   +  A+D   S     S   Q++  Q++Y QSRA  + N+ESTI ELG IF  LA MV +Q E   RID+N+  +  +VE A + +L++   ++SNRWLM+KIF ++I F  +F+ F+A
Sbjct:  182 KLASMSNDFKSVLEVRTENLKQ--QRSRREQFSRAPVSALPLA-PNHLGGGAVVLGAESHASKDVAIDMMDSR---TSQQLQLIDEQDSYIQSRADTMQNIESTIVELGSIFQQLAHMVKEQEETIQRIDENVLGAQLDVEAAHSEILKYFQSVTSNRWLMVKIFLILIVFFIIFVVFLA 355          
BLAST of CX674971 vs. ExPASy Swiss-Prot
Match: STX5_MOUSE (Syntaxin-5 OS=Mus musculus GN=Stx5 PE=2 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 1.456e-19
Identity = 64/180 (35.56%), Postives = 97/180 (53.89%), Query Frame = -3
Query:  203 KLMKAGNKFFSANALRDSPFRQHAQPVTEPPPWSSPVKASESSQPSALPPGGVQVGNQLR--RRPAVDNAPSHHMEMSMLQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFLTVFMFFVA 736
            KL    N F S   +R    +Q      +     +PV A   + P+ L  G + +G + R  R  A+D         S   Q++  Q++Y QSRA  + N+ESTI ELG IF  LA MV +Q E   RID+N+  +  +VE A + +L++   ++SNRWLM+KIF ++I F  +F+ F+A
Sbjct:  182 KLASMSNDFKSVLEVRTENLKQQRNRREQFS--RAPVSALPLA-PNNLGGGPIILGAESRASRDVAIDMMDPR---TSQQLQLIDEQDSYIQSRADTMQNIESTIVELGSIFQQLAHMVKEQEETIQRIDENVLGAQLDVEAAHSEILKYFQSVTSNRWLMVKIFLILIVFFIIFVVFLA 355          
BLAST of CX674971 vs. ExPASy Swiss-Prot
Match: STX3_CAEEL (Putative syntaxin-3 OS=Caenorhabditis elegans GN=syn-3 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.228e-19
Identity = 51/149 (34.23%), Postives = 93/149 (62.42%), Query Frame = -3
Query:  206 ASESSQPSALPPG--GVQVGNQLRRRPAVDNAPSHHMEMSML-----QQVVPRQEN---YSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFLTVFMFFV 622
            +S ++ P  LP    G  V ++L +      + S  ++M  L     QQ + ++++   Y+Q+R+  +  +E +I+ELG IF+ LA++V++QGE+  RID N++++  N++ A + L+R+L  IS NRWLMI++F V++ F  VF+ F+
Sbjct:  264 SSGAAVPMGLPSSSSGANVRSKLLQDDEQHGSSSIALDMGALSNMQSQQTMQQRDSSLEYAQARSNTMATIEGSISELGQIFSQLASLVSEQGEMITRIDSNVEDTALNIDMAHSELVRYLQNISKNRWLMIQVFGVLMVFFVVFVLFL 412          
BLAST of CX674971 vs. ExPASy Swiss-Prot
Match: SED5_SCHPO (Integral membrane protein sed5 OS=Schizosaccharomyces pombe GN=sed5 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.968e-16
Identity = 42/109 (38.53%), Postives = 73/109 (66.97%), Query Frame = -3
Query:  215 DNAPSHHMEMSMLQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFLTVFM 541
            D A + + +M++L+    + + YSQ R  ++ N+ESTITELGGIF+ LA MV++Q E   RID + D+ ++N+  A+  +++   ++SSNR L+ KIF ++I F  +++
Sbjct:  201 DGANTRYEQMALLES---QTDTYSQQRMSSIQNIESTITELGGIFSQLAQMVSEQRETVQRIDMHTDDIVSNIGSAQREIVKFYERMSSNRALLFKIFGIVIIFFLLWV 306          
BLAST of CX674971 vs. ExPASy Swiss-Prot
Match: SED5_YEAST (Integral membrane protein SED5 OS=Saccharomyces cerevisiae GN=SED5 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.769e-16
Identity = 39/106 (36.79%), Postives = 66/106 (62.26%), Query Frame = -3
Query:  215 PSHHMEMSMLQQVVPRQENYSQSRAVALHNVESTITELGGIFTHLATMVAQQGELAIRIDDNMDESLANVEGARNALLRHLNQISSNRWLMIKIFAVIIFFLTVFM 532
            P +  ++ ++++       Y Q R  A+  +ESTI E+G +F  LA+MV +QGE+  RID N+D+   N+ GA+  LL++ ++I SNRWL  K+F +I  F  +++
Sbjct:  232 PQNDSQLMLMEEGQLSNNVYLQERNRAVETIESTIQEVGNLFQQLASMVQEQGEVIQRIDANVDDIDLNISGAQRELLKYFDRIKSNRWLAAKVFFIIFVFFVIWV 337          
The following BLAST results are available for this feature:
BLAST of CX674971 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
SYP31_ARATH1.081e-5968.21Syntaxin-31 OS=Arabidopsis thaliana GN=SYP31 PE=1 ... [more]
SYP32_ARATH2.473e-3548.66Syntaxin-32 OS=Arabidopsis thaliana GN=SYP32 PE=2 ... [more]
STX5_BOVIN3.833e-2036.67Syntaxin-5 OS=Bos taurus GN=STX5 PE=2 SV=1[more]
STX5_DROME5.006e-2049.46Syntaxin-5 OS=Drosophila melanogaster GN=Syx5 PE=2... [more]
STX5_RAT6.538e-2035.56Syntaxin-5 OS=Rattus norvegicus GN=Stx5 PE=1 SV=2[more]
STX5_HUMAN6.538e-2036.11Syntaxin-5 OS=Homo sapiens GN=STX5 PE=1 SV=2[more]
STX5_MOUSE1.456e-1935.56Syntaxin-5 OS=Mus musculus GN=Stx5 PE=2 SV=3[more]
STX3_CAEEL7.228e-1934.23Putative syntaxin-3 OS=Caenorhabditis elegans GN=s... [more]
SED5_SCHPO1.968e-1638.53Integral membrane protein sed5 OS=Schizosaccharomy... [more]
SED5_YEAST9.769e-1636.79Integral membrane protein SED5 OS=Saccharomyces ce... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS10_9G10_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Citrus sinensis cDNA clone UCRCS10-9G10-M19-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX674971 ID=CX674971; Name=CX674971; organism=Citrus sinensis; type=EST; length=750bp
TTTTTTTTTTTTTTTTTGATGTCTAATTATGCTTTCTTTAAGTATATCTA
GTTTCCTAAAAATTTTACTAGTTACAGCAAAAAAAGTTGCAGATCGAATT
TACAGAATGAAGAAGCATATTTGACTAGCTATAAATGGATTGTGAAAAAT
AGATACTCGCACAGCAGCAACAAAATTATTGAATGCTCGGTATTCCAATT
CATGCCACAAAAAACATAAAGACCGTCAGAAAAAATATTATGACGGCAAA
AATCTTGATCATAAGCCATCGATTTGATGAAATTTGGTTTAGATGCCTCA
ACAGAGCATTACGAGCACCTTCAACATTAGCCAATGACTCGTCCATGTTA
TCATCAATCCTGATGGCTAGTTCGCCTTGCTGTGCTACCATTGTGGCCAG
ATGTGTGAAGATCCCACCGAGTTCTGTAATTGTAGATTCAACATTATGAA
GAGCCACTGCCCTACTTTGTGAGTAATTCTCTTGCCGTGGAACTACCTGC
TGTAACATCGACATTTCCATGTGGTGTGAAGGAGCATTGTCCACAGCTGG
CCTTCGTCTCAGTTGGTTTCCAACTTGGACTCCACCTGGCGGCAATGCTG
ATGGTTGTGAACTCTCAGATGCTTTTACTGGACTTGACCAAGGTGGGGGC
TCAGTAACAGGTTGTGCATGCTGTCTAAATGGGCTATCTCTCAATGCATT
TGCAGAAAAAAATTTGTTTCCTGCTTTCATGAGCTTTTATATTCTCAGTT
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