CN186350

Overview
NameCN186350
Unique NameCN186350
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6243 contig Csv1_Contig6243:210..1069. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPR2_ARATH (ATP-dependent Clp protease proteolytic subunit-related protein 2, chloroplastic OS=Arabidopsis thaliana GN=CLPR2 PE=1 SV=1)

HSP 1 Score: 363.229 bits (931), Expect = 1.042e-99
Identity = 170/221 (76.92%), Postives = 198/221 (89.59%), Query Frame = -1
Query:  192 KPIRGRIAMMPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIRPPRIKEDMPRKDAGTGLG 854
            K  R R+ MMPIGTP+V YR   EG+WQWVD+WNALYRERVIFIGQNIDEEFSNQILATMLYLD++DDS+R+YMY+NGPGGD+TP+LAIYDTM+SLKSPVGTHCVG AY+LAGFLLA GEKG+R AMPLSRIAL SPAGAARGQADDI+NEA EL R+RDY+F EL++ TGQP E++ KDLSR+KRF ++EA+EYGLID+I+RPPRIKED PR+D   GLG
Sbjct:   59 KASRSRVKMMPIGTPRVPYRNREEGTWQWVDIWNALYRERVIFIGQNIDEEFSNQILATMLYLDTLDDSRRIYMYLNGPGGDLTPSLAIYDTMKSLKSPVGTHCVGLAYNLAGFLLAAGEKGHRFAMPLSRIALQSPAGAARGQADDIQNEAKELSRIRDYLFNELAKNTGQPAERVFKDLSRVKRFNAEEAIEYGLIDKIVRPPRIKEDAPRQDESAGLG 279          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP2_THEEB (ATP-dependent Clp protease proteolytic subunit 2 OS=Thermosynechococcus elongatus (strain BP-1) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 5.984e-55
Identity = 107/193 (55.44%), Postives = 134/193 (69.43%), Query Frame = -1
Query:  249 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 827
            MPIG PKV YR PGE   QW+D++N LYRER+IF+G+ +D+E +NQI+A MLYLDS D  K + +YIN PGG VT  +AIYDTMQ +KS V T CVG A  +  FLLA G KG R A+P SRI +  P+G  RGQA DI  EA E+LRVR  + +  +  TGQP EKI +D+ R     ++EA  YGLIDR+I
Sbjct:    1 MPIGVPKVPYRLPGEPYTQWIDIYNRLYRERIIFLGKEVDDEIANQIVAVMLYLDSEDPGKDIMLYINSPGGSVTAGMAIYDTMQHIKSDVVTICVGLAASMGSFLLAAGTKGKRLALPHSRIMIHQPSGGTRGQATDIEIEAREILRVRRQLNELYAYHTGQPLEKIERDMDRDFFMSAEEAKNYGLIDRVI 193          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP3_ANASP (Probable ATP-dependent Clp protease proteolytic subunit 3 OS=Anabaena sp. (strain PCC 7120) GN=clpP3 PE=3 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 3.879e-54
Identity = 105/193 (54.40%), Postives = 133/193 (68.91%), Query Frame = -1
Query:  249 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 827
            MPIG PKV YR PG     W+ +++ LYRER+IF+G+++D+E +NQI+A MLYLDS D  K +Y+YIN PGG VT  LAIYDTMQ +KS V T CVG A  +  FLLA G KG R A+P SRI +  P+G  RGQA DI  EA E+LR+R  + +  +  T QP  KI KD+ R     +QEA+EYGLIDR+I
Sbjct:    1 MPIGVPKVPYRMPGGQFTDWISIYDRLYRERIIFLGRDVDDEIANQIIAVMLYLDSEDPGKDIYLYINSPGGMVTSGLAIYDTMQHIKSDVVTICVGLAASMGSFLLAAGTKGKRMALPHSRIMIHQPSGGTRGQATDIEIEAREILRIRHQLNQIYANNTSQPLAKIEKDMDRDFFMSAQEAMEYGLIDRVI 193          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP2_ANAVT (ATP-dependent Clp protease proteolytic subunit 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.474e-53
Identity = 105/193 (54.40%), Postives = 132/193 (68.39%), Query Frame = -1
Query:  249 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 827
            MPIG PKV YR PG     W+ +++ LYRER+IF+G+++D+E +NQI+A MLYLDS D  K +Y+YIN PGG VT  LAIYDTMQ +KS V T CVG A  +  FLLA G KG R A+P SRI +  P+G  RGQA DI  EA E+LR+R  + +  +  T QP  KI KD+ R     +QEA EYGLIDR+I
Sbjct:    1 MPIGVPKVPYRMPGGQFTDWISIYDRLYRERIIFLGRDVDDEIANQIIAVMLYLDSEDPGKDIYLYINSPGGMVTSGLAIYDTMQHIKSDVVTICVGLAASMGSFLLAAGTKGKRLALPHSRIMIHQPSGGTRGQATDIEIEAREILRIRHQLNQIYANNTNQPLAKIEKDMDRDFFMSAQEAKEYGLIDRVI 193          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_OLTVI (ATP-dependent Clp protease proteolytic subunit OS=Oltmannsiellopsis viridis GN=clpP PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 6.193e-52
Identity = 94/192 (48.96%), Postives = 142/192 (73.96%), Query Frame = -1
Query:  252 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 827
            MPIG PKV +R PGE S QWVDL+N LYRERV+F+ Q++D+E +NQ++  MLYL++ + SK +Y+YIN PGG VT  +A+YDTM  +K+ V T CVG A  +A F+LAGG +G R A+P SRI +  P G +RGQA ++ +E++E++R+R  + K  +++TGQP  +I++DL R +   ++EA +YG++D++
Sbjct:    1 MPIGVPKVPFRLPGEPSAQWVDLYNRLYRERVLFLCQDLDDELANQLIGIMLYLNAEEKSKDLYIYINSPGGSVTCGIAVYDTMNYIKADVTTICVGTAASMASFVLAGGTQGKRIALPHSRIMIHQPEGGSRGQASEVLSESEEVMRIRRQVGKIYAQRTGQPLRRISRDLDRDQFLSAREAKDYGIVDQV 192          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_CHLVU (ATP-dependent Clp protease proteolytic subunit OS=Chlorella vulgaris GN=clpP PE=3 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.602e-50
Identity = 91/192 (47.40%), Postives = 138/192 (71.88%), Query Frame = -1
Query:  252 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 827
            MPIG PKV +R PGE S QWVDL+N LYRERV+F+ Q +D+E +NQ++  MLYL++ + +K +Y+YIN PGG VT  +A+YD M  +KS V T CVG A  +A F+LAGG++G R A+P SRI +  P G ++GQA ++ +E+ E++R+R  + +  S +TGQ   ++++D+ R +   ++EA EYGL+D++
Sbjct:    1 MPIGVPKVPFRLPGEPSAQWVDLYNRLYRERVLFLCQELDDELANQLIGIMLYLNAEEQNKGLYIYINSPGGSVTCGIAVYDAMNYIKSEVTTICVGTAASMASFILAGGDRGKRIALPHSRIMVHQPEGGSQGQASEVLSESQEVMRIRRQVGRIYSERTGQTLSRVSRDMDRDQFLSAREAKEYGLVDQV 192          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP_PSEAK (ATP-dependent Clp protease proteolytic subunit OS=Pseudendoclonium akinetum GN=clpP PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.291e-49
Identity = 93/192 (48.44%), Postives = 137/192 (71.35%), Query Frame = -1
Query:  252 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRI 827
            MPIG PKV YR  G    +WVDL+N LYRERV+F+ Q++D+E +NQ++  MLYL++ D SK +Y+YIN PGG VT  + ++D M  +KS V T CVG A  +A F+LAGG KG R A+P SRI +  P G ++GQA  + +E++E+LR+RD + +  S +TGQ  E+I++D++R +   ++EA +YGL+D+I
Sbjct:    1 MPIGVPKVPYRLAGNEVAEWVDLYNRLYRERVLFLCQDLDDELANQLIGIMLYLNAEDKSKGIYVYINSPGGSVTCGVGVFDAMNYIKSDVTTICVGTAASMASFVLAGGRKGKRLALPHSRIMIHQPEGGSQGQASVVLSESEEVLRIRDEVAQIYSERTGQTLERISRDMNRDQFMSAREAKDYGLVDQI 192          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP3_SYNE7 (ATP-dependent Clp protease proteolytic subunit 3 OS=Synechococcus elongatus (strain PCC 7942) GN=clpP3 PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.203e-49
Identity = 98/194 (50.52%), Postives = 129/194 (66.49%), Query Frame = -1
Query:  249 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP-AGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 827
            MPIG P V YR PG    +W+D++N L  ER+IF+GQ + +  +N I+A +LYLDS D SK +Y+YIN PGG VT  +AIYDTMQ +KSPV T C+G A  +  FLL  G KG R A+P SRI +  P  G  R QA DI  EA E+LR++  + + ++ +TGQP EKI KD  R     ++EA EYGLID++I
Sbjct:    1 MPIGVPSVPYRLPGSSFERWIDIYNRLAMERIIFLGQEVTDGLANSIVAQLLYLDSEDSSKPIYLYINSPGGSVTAGMAIYDTMQYIKSPVITICLGLAASMGAFLLCAGSKGKRLALPHSRIMIHQPLGGTGRRQASDIEIEAKEILRIKKLLNQIMADRTGQPLEKIEKDTDRDYFMSAEEAREYGLIDQVI 194          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP2_SYNP6 (ATP-dependent Clp protease proteolytic subunit 2 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=clpP2 PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.203e-49
Identity = 98/194 (50.52%), Postives = 129/194 (66.49%), Query Frame = -1
Query:  249 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSP-AGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRII 827
            MPIG P V YR PG    +W+D++N L  ER+IF+GQ + +  +N I+A +LYLDS D SK +Y+YIN PGG VT  +AIYDTMQ +KSPV T C+G A  +  FLL  G KG R A+P SRI +  P  G  R QA DI  EA E+LR++  + + ++ +TGQP EKI KD  R     ++EA EYGLID++I
Sbjct:    1 MPIGVPSVPYRLPGSSFERWIDIYNRLAMERIIFLGQEVTDGLANSIVAQLLYLDSEDSSKPIYLYINSPGGSVTAGMAIYDTMQYIKSPVITICLGLAASMGAFLLCAGSKGKRLALPHSRIMIHQPLGGTGRRQASDIEIEAKEILRIKKLLNQIMADRTGQPLEKIEKDTDRDYFMSAEEAREYGLIDQVI 194          
BLAST of CN186350 vs. ExPASy Swiss-Prot
Match: CLPP1_GLOVI (ATP-dependent Clp protease proteolytic subunit 1 OS=Gloeobacter violaceus GN=clpP1 PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.877e-49
Identity = 94/194 (48.45%), Postives = 135/194 (69.59%), Query Frame = -1
Query:  246 MPIGTPKVLYRTPGEGSWQWVDLWNALYRERVIFIGQNIDEEFSNQILATMLYLDSVDDSKRVYMYINGPGGDVTPTLAIYDTMQSLKSPVGTHCVGFAYHLAGFLLAGGEKGNRSAMPLSRIALDSPAGAARGQADDIRNEADELLRVRDYIFKELSRKTGQPFEKITKDLSRIKRFGSQEALEYGLIDRIIR 827
            MPIG PKV YR PG G  QW+D++N L  +R+IF+G+ +D+E +N I+A+MLYLDS D  K +++YIN PGG V+  LAIYDTMQ +++ V T CVG A  +  FLL  G KG R+++P SRI +  P G A+GQA DI  +A E+L  +D + + LS +TGQP E+I +D  R     +++A +YGLID++++
Sbjct:    1 MPIGIPKVPYRLPG-GQSQWIDIFNRLALDRIIFLGREVDDEIANAIIASMLYLDSEDPEKDIFLYINSPGGSVSAGLAIYDTMQHVRADVATMCVGLAASMGSFLLTAGAKGKRTSLPHSRIMIHQPLGGAQGQATDIGIQAKEILYTKDRLNQILSERTGQPLERIERDTDRDFFMSAEDAKQYGLIDQVVQ 193          
The following BLAST results are available for this feature:
BLAST of CN186350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CLPR2_ARATH1.042e-9976.92ATP-dependent Clp protease proteolytic subunit-rel... [more]
CLPP2_THEEB5.984e-5555.44ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP3_ANASP3.879e-5454.40Probable ATP-dependent Clp protease proteolytic su... [more]
CLPP2_ANAVT1.474e-5354.40ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP_OLTVI6.193e-5248.96ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_CHLVU2.602e-5047.40ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP_PSEAK1.291e-4948.44ATP-dependent Clp protease proteolytic subunit OS=... [more]
CLPP3_SYNE72.203e-4950.52ATP-dependent Clp protease proteolytic subunit 3 O... [more]
CLPP2_SYNP62.203e-4950.52ATP-dependent Clp protease proteolytic subunit 2 O... [more]
CLPP1_GLOVI2.877e-4948.45ATP-dependent Clp protease proteolytic subunit 1 O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002M07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186350 ID=CN186350; Name=CN186350; organism=Citrus sinensis; type=EST; length=860bp
GGCCAGCGAGCCCCTTTTTTTACCATCAATTCTTTGTAGGTTTTATTAGA
TGTAAATTACACATTTCAGAGCAAACTTCTACAAGAATAATTCGATTGAG
TAGTTAATTTTACAAGTAGATGAATGAAATTACGAAAGATAAAATATTTG
ATGACTTCAGTCTACTCAGTGGAGAATCAATGAATACACTAACCAAGACC
TGTTCCAGCATCTTTACGAGGCATATCTTCCTTAATACGAGGTGGCCTGA
TTATACGATCTATCAGCCCATATTCAAGAGCCTCCTGGGAACCAAAGCGT
TTAATCCTACTTAAATCCTTCGTAATCTTCTCAAAGGGCTGACCTGTTTT
CCTAGACAACTCCTTGAAAATGTAATCTCTGACTCTAAGAAGCTCATCTG
CTTCATTACGAATGTCATCAGCCTGACCGCGAGCTGCACCAGCTGGAGAG
TCTAAAGCAATTCTCGAAAGAGGCATTGCAGACCGATTACCCTTTTCTCC
ACCTGCTAGAAGAAACCCTGCTAAATGATAGGCAAAGCCCACACAGTGAG
TGCCAACAGGACTCTTCAAGCTCTGCATAGTGTCGTAAATTGCCAAGGTG
GGAGTAACATCCCCACCAGGACCGTTGATGTACATATAAACCCTTTTGGA
ATCATCAACACTGTCTAGATACAACATCGTTGCCAATATTTGGTTGCTAA
ATTCTTCATCTATATTTTGCCCAATGAAAATAACACGTTCTCGATATAGG
GCATTCCATAGATCAACCCATTGCCAAGATCCCTCACCAGGCGTCCTATA
AAGCACTTTTGGTGTCCCAATTGGCATCATTGCAATTCGTCCCCTTATTG
GTTTATCATT
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