CX043526

Overview
NameCX043526
Unique NameCX043526
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2024 contig Csv1_Contig2024:534..1311. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043526 vs. ExPASy Swiss-Prot
Match: TI10B_ARATH (Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10B PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.495e-22
Identity = 67/162 (41.36%), Postives = 88/162 (54.32%), Query Frame = -2
Query:  289 KPAPQTAQMTIFYGGQVIAFNDFPADKANEIMQLASNGSSLSHGTAYPPMQLPAQGYNSFAASLPKSPVESTPPVSPGPPKILTEPSCSVPPRSNSIPNFGNNLIPECAQPPSRPCDLPIARRNSLHRFLEKRKDRIVARAPYQVNGSAGAPDKPADSKSWL 774
            KP  Q+A +TIFYGG+V+ F+DF A+KA E++ LA+ GS+ S           A+  N+ +A   K    S  PV         EP   + P                  P S  C+LPIARR SLHRFLEKRKDRI ++APYQ++GSA A  KP  + +WL
Sbjct:  112 KPESQSAPLTIFYGGRVMVFDDFSAEKAKEVIDLANKGSAKSFTC------FTAEVNNNHSAYSQKEIASSPNPVCSPAKTAAQEP---IQPN-----------------PASLACELPIARRASLHRFLEKRKDRITSKAPYQIDGSAEASSKPT-NPAWL 246          
BLAST of CX043526 vs. ExPASy Swiss-Prot
Match: TI10A_ARATH (Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10A PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.399e-20
Identity = 67/170 (39.41%), Postives = 86/170 (50.59%), Query Frame = -2
Query:  274 KPAPQTAQMTIFYGGQVIAFNDFPADKANEIMQLASNGSSLSHGTAYPPMQLPAQGYNSFAASLPKSPVESTPPVSPGPPKILTEPSCSVPPRSNSIPNFGNNLIPECAQPPSRP-CDLPIARRNSLHRFLEKRKDRIVARAPYQVNGSAGAPDKP--ADSKSWLGLAAQ 774
            KP  QTA +TIFY GQVI FNDF A+KA E++ LAS G++                 NS A                   K  T+   ++   +N +P+       E  Q    P  +LPIARR SLHRFLEKRKDR+ ++APYQ+   A A   P    + SWLGLAA+
Sbjct:  119 KPESQTAPLTIFYAGQVIVFNDFSAEKAKEVINLASKGTA-----------------NSLA-------------------KNQTDIRSNIATIANQVPHPRKTTTQEPIQSSPTPLTELPIARRASLHRFLEKRKDRVTSKAPYQLCDPAKASSNPQTTGNMSWLGLAAE 252          
BLAST of CX043526 vs. ExPASy Swiss-Prot
Match: TIF6B_ARATH (Protein TIFY 6B OS=Arabidopsis thaliana GN=TIFY6B PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.696e-11
Identity = 53/161 (32.92%), Postives = 78/161 (48.45%), Query Frame = -2
Query:  346 NKPAPQTAQMTIFYGGQVIAFNDFPADKANEIMQLASNGSSLSHGTAYPPMQLPAQGYNSFAASLPKS--PVESTPPVSPGPPKI--------LTEPSCSVPPRSNSIPNFGNNLIPECAQPPSRPCD-------LPIARRNSLHRFLEKRKDRIVARAPY 777
            +KP    AQ+TIFY G V  ++D   +KA  IM LA NGSS+     + P Q   Q  +   AS+  S  P    P +S   P+          T+ +  +    ++    G+N+   C  P S   +       LP+AR+ SL RFLEKRK+R+ + +PY
Sbjct:  170 SKPIGSPAQLTIFYAGSVCVYDDISPEKAKAIMLLAGNGSSMPQ--VFSPPQTHQQVVHHTRASVDSSAMPPSFMPTISYLSPEAGSSTNGLGATKATRGLTSTYHNNQANGSNI--NCPVPVSCSTNVMAPTVALPLARKASLARFLEKRKERVTSVSPY 326          
The following BLAST results are available for this feature:
BLAST of CX043526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
TI10B_ARATH1.495e-2241.36Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10... [more]
TI10A_ARATH1.399e-2039.41Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10... [more]
TIF6B_ARATH7.696e-1132.92Protein TIFY 6B OS=Arabidopsis thaliana GN=TIFY6B ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_11F08_b Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-11F08-K15-1-6.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043526 ID=CX043526; Name=CX043526; organism=Citrus sinensis; type=EST; length=778bp
TTTTTTTTTTTTTTTTTGACTGAAGAAAGAGTCAACACGTAAAATTATTC
ATTGGGATTAACATTAACTAAATTTTCAATAAAGAAGTTAATTACATAAA
CTATTGGTAAGAAAAATGATCGTTAGATCTATGGGGGGCTCATCAAAACC
CAACCTAAAAGAAGATGGAAGATGAAGAAAAACGAAGCAAGGTTTATGTT
TGCCAAAAAGACGATGACCGGCCAATAATCAGTCCCTAAAACTGGATGCA
ATTTGCACAAACTACTGTGAAGTTTGAGCAGCCAGGCCAAGCCATGACTT
GCTATCAGCGGGCTTGTCTGGAGCCCCTGCTGAGCCATTCACTTGGTACG
GTGCTCTTGCAACAATCCTGTCTTTTCTCTTCTCCAAGAACCTGTGGAGT
GAATTTCTCCTTGCAATTGGTAGATCACAAGGTCTTGAGGGAGGTTGAGC
GCACTCTGGAATTAGATTGTTGCCAAAGTTAGGAATGCTATTTGATCGAG
GAGGAACCGAGCAACTAGGCTCTGTTAGAATTTTTGGGGGGCCAGGAGAA
ACCGGGGGAGTTGATTCAACTGGACTTTTGGGTAAACTAGCAGCAAAAGA
GTTGTAACCCTGGGCCGGCAGTTGCATAGGAGGATATGCGGTACCATGGC
TCAGTGAGCTCCCGTTGCTTGCTAATTGCATGATTTCATTTGCTTTATCA
GCAGGAAAATCATTGAACGCAATCACTTGTCCGCCATAAAATATAGTCAT
TTGAGCAGTTTGCGGCGCGGGCTTGTTT
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