CN186278

Overview
NameCN186278
Unique NameCN186278
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length757
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1828 contig Csv1_Contig1828:54..810. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN186278 vs. ExPASy Swiss-Prot
Match: TSJT1_TOBAC (Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.526e-24
Identity = 59/150 (39.33%), Postives = 86/150 (57.33%), Query Frame = 3 
Query:   39 MLAIFHKAFANPPEELHSPASQKCSNRPKLPEDTLSDFLSRHPDNTFSMNFGHAAVLAYVPPHSPLTKDRRLFCGFEDIYCLFMGSLNNLCSLIRQYGLSKGTDEAMFVIEAYRTLRDRGPYPADQVVKDLDGSFAFVVYDSKAGTVFTA 488
            MLA+F ++   PP EL  P +       K  E+    F +   D+TF   F    +       +PL    R     +D++C+F G+L+N   L + YGLS+   EAM ++EAY+ LRDR PYP DQV+K+L+G FAF+++DSKA T+F A
Sbjct:    1 MLAVFEQSIGRPPPELSLPQAGIQKKEAKTREEIAESFKTWKQDSTFYHLFNGNFMAFSHGNENPLQP--RSIVVMDDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAPYPPDQVIKELEGKFAFILFDSKASTLFLA 148
The following BLAST results are available for this feature:
BLAST of CN186278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TSJT1_TOBAC1.526e-2439.33Stem-specific protein TSJT1 OS=Nicotiana tabacum G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0002K10_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002K10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186278 ID=CN186278; Name=CN186278; organism=Citrus sinensis; type=EST; length=757bp
GAGGATTTCTCAAGAAAGGAAATTTTGTTATAAAGAATATGTTGGCGATA
TTTCACAAGGCGTTTGCCAATCCGCCTGAGGAGCTTCATAGCCCTGCGTC
TCAAAAATGTTCGAACAGGCCTAAACTCCCTGAGGATACCCTCAGTGACT
TCCTCTCCCGTCACCCGGATAACACTTTCTCCATGAACTTTGGCCATGCT
GCTGTTCTTGCTTACGTCCCCCCTCACTCCCCTTTAACCAAGGACCGAAG
GTTGTTTTGCGGGTTTGAGGACATATACTGTCTGTTCATGGGGTCCTTGA
ACAACTTGTGTTCGCTGATCAGGCAATATGGGTTGTCAAAGGGAACCGAT
GAGGCCATGTTTGTGATAGAGGCGTATCGTACGCTCAGAGACCGGGGTCC
TTACCCAGCTGACCAGGTTGTCAAGGATCTTGATGGGAGCTTTGCTTTTG
TGGTCTACGATAGCAAGGCCGGCACGGTCTTCACTGCTCTGGGTTCTGAT
GGGGGAGTGAGGCTGTACTGGGGAATTGCAGCCGATGGATCTGTGGTCAT
ATCTGATGACTTGGAGGTCATCAAAGAGGGATGTGCCAAGTCATTTGCTC
CCTTCCCACAGGGGTGCATGTTCCACAGTGAAGGAGGATTGATGAGCTTT
GAGCATCCAATGAACAAGATAAGGGCAATGCCAAGAGTAGATAGTGAAGG
TGTCATGTGTGGAGCCAATTTCAAGGGTGATAAATACACTAGGATCAACA
GCATTCC
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