CN186272
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA0_SOYBN (60S acidic ribosomal protein P0 OS=Glycine max PE=2 SV=1) HSP 1 Score: 299.671 bits (766), Expect = 1.195e-80 Identity = 159/206 (77.18%), Postives = 171/206 (83.01%), Query Frame = -3 Query: 160 RVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDEDMGFSLFD 774 RVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVV SVY+NGSV+SPEVLDL+EDDL+ KFA+ VSMVT+L+LAISYPTLAAAPHMFVNAYKNV+AVA+ T+YSFP+ADKVKEYL DPSKF ESD+DMGFSLFD Sbjct: 115 RVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFSPEVLDLTEDDLIGKFAAGVSMVTSLSLAISYPTLAAAPHMFVNAYKNVLAVAVETDYSFPEADKVKEYLKDPSKFAVAAVAAPAAASGAPAAAAKEEEKKEEPAEESDDDMGFSLFD 320
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA02_ARATH (60S acidic ribosomal protein P0-2 OS=Arabidopsis thaliana GN=RPP0B PE=1 SV=2) HSP 1 Score: 293.123 bits (749), Expect = 1.118e-78 Identity = 145/164 (88.41%), Postives = 159/164 (96.95%), Query Frame = -3 Query: 283 RVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 774 RVGLVAPIDVVV PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI++GDKVGSSEAALLAKLGIRPFSYGLVVQSVY+NGSV+SPEVLDL+ED LVEKFAS +SMVT+LALA+SYPTLAAAPHMF+NAYKN +A+A+ATEY+FPQA+KVKEYL DPSKF Sbjct: 114 RVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIAVATEYTFPQAEKVKEYLKDPSKF 277
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA03_ARATH (60S acidic ribosomal protein P0-3 OS=Arabidopsis thaliana GN=RPP0C PE=1 SV=1) HSP 1 Score: 290.426 bits (742), Expect = 7.249e-78 Identity = 143/164 (87.20%), Postives = 159/164 (96.95%), Query Frame = -3 Query: 283 RVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 774 RVGLVAPIDVVV PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI++GDKVGSSEAALLAKLGIRPFSYGLVVQSVY+NGSV+SPEVLDL+ED LVEKFAS +SMVT+LALA+SYPTLAAAPHMF+NAYKN +A+A+AT+Y+FPQA+KVKE+L DPSKF Sbjct: 114 RVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIAVATDYTFPQAEKVKEFLKDPSKF 277
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA01_ARATH (60S acidic ribosomal protein P0-1 OS=Arabidopsis thaliana GN=RPP0A PE=2 SV=1) HSP 1 Score: 289.656 bits (740), Expect = 1.237e-77 Identity = 144/164 (87.80%), Postives = 160/164 (97.56%), Query Frame = -3 Query: 283 RVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 774 RVGLVAPIDVVV PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KGDKVGSSEAALLAKLGIRPFSYGLVV+SVY+NGSV++PEVL+L+EDDLVEKFA+ VSM+TAL+LAISYPT+AAAPHMF+NAYKNV+AVALATEYSFPQA+ VKE+L DP+KF Sbjct: 115 RVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVESVYDNGSVFNPEVLNLTEDDLVEKFAAGVSMITALSLAISYPTVAAAPHMFLNAYKNVLAVALATEYSFPQAENVKEFLKDPTKF 278
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA0_ORYSJ (60S acidic ribosomal protein P0 OS=Oryza sativa subsp. japonica GN=Os08g0130500 PE=1 SV=3) HSP 1 Score: 288.886 bits (738), Expect = 2.109e-77 Identity = 147/205 (71.71%), Postives = 167/205 (81.46%), Query Frame = -3 Query: 160 RVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDEDMGFSLFD 774 RVGLVAP+DVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KGDKVGSSE+ALLAKLGIRPFSYGLV+ +VY++GSV+SPEVLDL+EDDL+EKFAS VSMV +++LAISYPT+AAAPHMF+N YKNV+AVA+ TEYS+P ADK+KEYL DPSKF ESD D+G SLFD Sbjct: 115 RVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDSGSVFSPEVLDLTEDDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAVETEYSYPHADKIKEYLKDPSKFAVAAPVAADSGAAAPSAAKEEEKKEEPEEESDGDLGMSLFD 319
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA0_MAIZE (60S acidic ribosomal protein P0 OS=Zea mays GN=RP-P0 PE=1 SV=3) HSP 1 Score: 287.345 bits (734), Expect = 6.137e-77 Identity = 149/205 (72.68%), Postives = 167/205 (81.46%), Query Frame = -3 Query: 160 RVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDEDMGFSLFD 774 RVGLVAP+DVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KG+KVGSSE+ALLAKLGIRPFSYGL V SVYE+GSV+SPEVLDLSE+DL+EKFA+ VSMV +L+LAISYPTLAA PHMF+N YKNV+AVA+ T+YS+P ADK+KEYL DPSKF ESDE+MGFSLFD Sbjct: 115 RVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGEKVGSSESALLAKLGIRPFSYGLQVTSVYEDGSVFSPEVLDLSEEDLIEKFATGVSMVASLSLAISYPTLAAVPHMFINGYKNVLAVAVETDYSYPHADKIKEYLKDPSKF-AVAAPVAAGDSGASAAPKEEEKAAEPEEESDEEMGFSLFD 318
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA0_LUPLU (60S acidic ribosomal protein P0 OS=Lupinus luteus PE=2 SV=1) HSP 1 Score: 265.003 bits (676), Expect = 3.262e-70 Identity = 143/206 (69.42%), Postives = 157/206 (76.21%), Query Frame = -3 Query: 160 VGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDEDMGFSLFD 771 VGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KGDKVGSSEAALLAKLGIRPFSYGLVV SVY+NGSV+ PEVLDL+EDDL+EKFA VS + P +AAPH+F+NAYKNV+AVA+ATEYSFPQAD+VKEYL DPSKF ESD++MGF LFD Sbjct: 116 VGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFKPEVLDLTEDDLLEKFAIGVSQCYFSDTSHFIPNPSAAPHVFINAYKNVLAVAVATEYSFPQADEVKEYLKDPSKFAAVAAAAAPAADSGAAPAAAAKAEKEEEPAEESDDEMGFGLFD 321
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA0_CHERU (60S acidic ribosomal protein P0 OS=Chenopodium rubrum PE=2 SV=1) HSP 1 Score: 220.705 bits (561), Expect = 7.054e-57 Identity = 111/128 (86.72%), Postives = 123/128 (96.09%), Query Frame = -3 Query: 391 RVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPH 774 R GLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIIT VELI+KG+KVGSSEAALLAKLGIRPFSYGL V+SVY++GSV+SPEVLDL+EDDL+ +FA+ VSMVT+L+LAISYPTLAAAPH Sbjct: 115 RFGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITAVELIKKGEKVGSSEAALLAKLGIRPFSYGLNVESVYDDGSVFSPEVLDLTEDDLLARFATGVSMVTSLSLAISYPTLAAAPH 242
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA0_CHICK (60S acidic ribosomal protein P0 OS=Gallus gallus GN=RPLP0 PE=2 SV=1) HSP 1 Score: 208.379 bits (529), Expect = 3.623e-53 Identity = 105/205 (51.22%), Postives = 136/205 (66.34%), Query Frame = -3 Query: 160 RVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDEDMGFSLFD 774 R G +AP DV VP NTGL P +TSFFQ L I TKI++GT+EI++ V+LI+ GDKVG+SEA LL L I PFS+GLV+Q V++NGS+Y+PEVLD++E+ L ++F V V ++ L I YPT+A+ PH VN YK V+AVA+ T+Y+FP A+KVK +LADPS F ESDEDMGF LFD Sbjct: 112 RAGAIAPCDVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSIYNPEVLDITEETLHKRFLEGVRNVASVCLQIGYPTIASVPHSIVNGYKRVLAVAVETDYTFPLAEKVKAFLADPSAFVAAAPVVVETAAPAAAAAPAKEAPKEESEESDEDMGFGLFD 316
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA0_ICTPU (60S acidic ribosomal protein P0 OS=Ictalurus punctatus GN=rplp0 PE=2 SV=1) HSP 1 Score: 206.453 bits (524), Expect = 1.377e-52 Identity = 98/164 (59.76%), Postives = 125/164 (76.22%), Query Frame = -3 Query: 283 RVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 774 R G +AP +V VP NTGL P +TSFFQ L I TKI++GT+EI++ V+LIR GDKVG+SEA LL L I PFSYGL++Q VY+NGSVYSPEVLD++ED L ++F V + ++ L I YPTLA+ PH +N YK V+ VA+ T+YSFP ADKVK +LADPS+F Sbjct: 112 RAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIRPGDKVGASEATLLNMLNISPFSYGLIIQQVYDNGSVYSPEVLDITEDALHKRFLEGVRNIASVCLQIGYPTLASIPHSIINGYKRVLRVAVETDYSFPMADKVKAFLADPSRF 275 The following BLAST results are available for this feature:
BLAST of CN186272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 60
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Sequences
The
following sequences are available for this feature:
EST sequence >CN186272 ID=CN186272; Name=CN186272; organism=Citrus sinensis; type=EST; length=776bpback to top |