CN186272

Overview
NameCN186272
Unique NameCN186272
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length776
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6312 contig Csv1_Contig6312:535..1309. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA0_SOYBN (60S acidic ribosomal protein P0 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 299.671 bits (766), Expect = 1.195e-80
Identity = 159/206 (77.18%), Postives = 171/206 (83.01%), Query Frame = -3
Query:  160 RVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDEDMGFSLFD 774
            RVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVV SVY+NGSV+SPEVLDL+EDDL+ KFA+ VSMVT+L+LAISYPTLAAAPHMFVNAYKNV+AVA+ T+YSFP+ADKVKEYL DPSKF                              ESD+DMGFSLFD
Sbjct:  115 RVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFSPEVLDLTEDDLIGKFAAGVSMVTSLSLAISYPTLAAAPHMFVNAYKNVLAVAVETDYSFPEADKVKEYLKDPSKFAVAAVAAPAAASGAPAAAAKEEEKKEEPAEESDDDMGFSLFD 320          
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA02_ARATH (60S acidic ribosomal protein P0-2 OS=Arabidopsis thaliana GN=RPP0B PE=1 SV=2)

HSP 1 Score: 293.123 bits (749), Expect = 1.118e-78
Identity = 145/164 (88.41%), Postives = 159/164 (96.95%), Query Frame = -3
Query:  283 RVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 774
            RVGLVAPIDVVV PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI++GDKVGSSEAALLAKLGIRPFSYGLVVQSVY+NGSV+SPEVLDL+ED LVEKFAS +SMVT+LALA+SYPTLAAAPHMF+NAYKN +A+A+ATEY+FPQA+KVKEYL DPSKF
Sbjct:  114 RVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIAVATEYTFPQAEKVKEYLKDPSKF 277          
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA03_ARATH (60S acidic ribosomal protein P0-3 OS=Arabidopsis thaliana GN=RPP0C PE=1 SV=1)

HSP 1 Score: 290.426 bits (742), Expect = 7.249e-78
Identity = 143/164 (87.20%), Postives = 159/164 (96.95%), Query Frame = -3
Query:  283 RVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 774
            RVGLVAPIDVVV PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI++GDKVGSSEAALLAKLGIRPFSYGLVVQSVY+NGSV+SPEVLDL+ED LVEKFAS +SMVT+LALA+SYPTLAAAPHMF+NAYKN +A+A+AT+Y+FPQA+KVKE+L DPSKF
Sbjct:  114 RVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYGLVVQSVYDNGSVFSPEVLDLTEDQLVEKFASGISMVTSLALAVSYPTLAAAPHMFINAYKNALAIAVATDYTFPQAEKVKEFLKDPSKF 277          
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA01_ARATH (60S acidic ribosomal protein P0-1 OS=Arabidopsis thaliana GN=RPP0A PE=2 SV=1)

HSP 1 Score: 289.656 bits (740), Expect = 1.237e-77
Identity = 144/164 (87.80%), Postives = 160/164 (97.56%), Query Frame = -3
Query:  283 RVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 774
            RVGLVAPIDVVV PGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KGDKVGSSEAALLAKLGIRPFSYGLVV+SVY+NGSV++PEVL+L+EDDLVEKFA+ VSM+TAL+LAISYPT+AAAPHMF+NAYKNV+AVALATEYSFPQA+ VKE+L DP+KF
Sbjct:  115 RVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVESVYDNGSVFNPEVLNLTEDDLVEKFAAGVSMITALSLAISYPTVAAAPHMFLNAYKNVLAVALATEYSFPQAENVKEFLKDPTKF 278          
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA0_ORYSJ (60S acidic ribosomal protein P0 OS=Oryza sativa subsp. japonica GN=Os08g0130500 PE=1 SV=3)

HSP 1 Score: 288.886 bits (738), Expect = 2.109e-77
Identity = 147/205 (71.71%), Postives = 167/205 (81.46%), Query Frame = -3
Query:  160 RVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDEDMGFSLFD 774
            RVGLVAP+DVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KGDKVGSSE+ALLAKLGIRPFSYGLV+ +VY++GSV+SPEVLDL+EDDL+EKFAS VSMV +++LAISYPT+AAAPHMF+N YKNV+AVA+ TEYS+P ADK+KEYL DPSKF                             ESD D+G SLFD
Sbjct:  115 RVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESALLAKLGIRPFSYGLVITNVYDSGSVFSPEVLDLTEDDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAVETEYSYPHADKIKEYLKDPSKFAVAAPVAADSGAAAPSAAKEEEKKEEPEEESDGDLGMSLFD 319          
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA0_MAIZE (60S acidic ribosomal protein P0 OS=Zea mays GN=RP-P0 PE=1 SV=3)

HSP 1 Score: 287.345 bits (734), Expect = 6.137e-77
Identity = 149/205 (72.68%), Postives = 167/205 (81.46%), Query Frame = -3
Query:  160 RVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDEDMGFSLFD 774
            RVGLVAP+DVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KG+KVGSSE+ALLAKLGIRPFSYGL V SVYE+GSV+SPEVLDLSE+DL+EKFA+ VSMV +L+LAISYPTLAA PHMF+N YKNV+AVA+ T+YS+P ADK+KEYL DPSKF                             ESDE+MGFSLFD
Sbjct:  115 RVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGEKVGSSESALLAKLGIRPFSYGLQVTSVYEDGSVFSPEVLDLSEEDLIEKFATGVSMVASLSLAISYPTLAAVPHMFINGYKNVLAVAVETDYSYPHADKIKEYLKDPSKF-AVAAPVAAGDSGASAAPKEEEKAAEPEEESDEEMGFSLFD 318          
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA0_LUPLU (60S acidic ribosomal protein P0 OS=Lupinus luteus PE=2 SV=1)

HSP 1 Score: 265.003 bits (676), Expect = 3.262e-70
Identity = 143/206 (69.42%), Postives = 157/206 (76.21%), Query Frame = -3
Query:  160 VGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDEDMGFSLFD 771
            VGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELI+KGDKVGSSEAALLAKLGIRPFSYGLVV SVY+NGSV+ PEVLDL+EDDL+EKFA  VS       +   P  +AAPH+F+NAYKNV+AVA+ATEYSFPQAD+VKEYL DPSKF                               ESD++MGF LFD
Sbjct:  116 VGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVLSVYDNGSVFKPEVLDLTEDDLLEKFAIGVSQCYFSDTSHFIPNPSAAPHVFINAYKNVLAVAVATEYSFPQADEVKEYLKDPSKFAAVAAAAAPAADSGAAPAAAAKAEKEEEPAEESDDEMGFGLFD 321          
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA0_CHERU (60S acidic ribosomal protein P0 OS=Chenopodium rubrum PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 7.054e-57
Identity = 111/128 (86.72%), Postives = 123/128 (96.09%), Query Frame = -3
Query:  391 RVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPH 774
            R GLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIIT VELI+KG+KVGSSEAALLAKLGIRPFSYGL V+SVY++GSV+SPEVLDL+EDDL+ +FA+ VSMVT+L+LAISYPTLAAAPH
Sbjct:  115 RFGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITAVELIKKGEKVGSSEAALLAKLGIRPFSYGLNVESVYDDGSVFSPEVLDLTEDDLLARFATGVSMVTSLSLAISYPTLAAAPH 242          
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA0_CHICK (60S acidic ribosomal protein P0 OS=Gallus gallus GN=RPLP0 PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.623e-53
Identity = 105/205 (51.22%), Postives = 136/205 (66.34%), Query Frame = -3
Query:  160 RVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXESDEDMGFSLFD 774
            R G +AP DV VP  NTGL P +TSFFQ L I TKI++GT+EI++ V+LI+ GDKVG+SEA LL  L I PFS+GLV+Q V++NGS+Y+PEVLD++E+ L ++F   V  V ++ L I YPT+A+ PH  VN YK V+AVA+ T+Y+FP A+KVK +LADPS F                             ESDEDMGF LFD
Sbjct:  112 RAGAIAPCDVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSIYNPEVLDITEETLHKRFLEGVRNVASVCLQIGYPTIASVPHSIVNGYKRVLAVAVETDYTFPLAEKVKAFLADPSAFVAAAPVVVETAAPAAAAAPAKEAPKEESEESDEDMGFGLFD 316          
BLAST of CN186272 vs. ExPASy Swiss-Prot
Match: RLA0_ICTPU (60S acidic ribosomal protein P0 OS=Ictalurus punctatus GN=rplp0 PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.377e-52
Identity = 98/164 (59.76%), Postives = 125/164 (76.22%), Query Frame = -3
Query:  283 RVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTALALAISYPTLAAAPHMFVNAYKNVVAVALATEYSFPQADKVKEYLADPSKF 774
            R G +AP +V VP  NTGL P +TSFFQ L I TKI++GT+EI++ V+LIR GDKVG+SEA LL  L I PFSYGL++Q VY+NGSVYSPEVLD++ED L ++F   V  + ++ L I YPTLA+ PH  +N YK V+ VA+ T+YSFP ADKVK +LADPS+F
Sbjct:  112 RAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIRPGDKVGASEATLLNMLNISPFSYGLIIQQVYDNGSVYSPEVLDITEDALHKRFLEGVRNIASVCLQIGYPTLASIPHSIINGYKRVLRVAVETDYSFPMADKVKAFLADPSRF 275          
The following BLAST results are available for this feature:
BLAST of CN186272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
RLA0_SOYBN1.195e-8077.1860S acidic ribosomal protein P0 OS=Glycine max PE=... [more]
RLA02_ARATH1.118e-7888.4160S acidic ribosomal protein P0-2 OS=Arabidopsis t... [more]
RLA03_ARATH7.249e-7887.2060S acidic ribosomal protein P0-3 OS=Arabidopsis t... [more]
RLA01_ARATH1.237e-7787.8060S acidic ribosomal protein P0-1 OS=Arabidopsis t... [more]
RLA0_ORYSJ2.109e-7771.7160S acidic ribosomal protein P0 OS=Oryza sativa su... [more]
RLA0_MAIZE6.137e-7772.6860S acidic ribosomal protein P0 OS=Zea mays GN=RP-... [more]
RLA0_LUPLU3.262e-7069.4260S acidic ribosomal protein P0 OS=Lupinus luteus ... [more]
RLA0_CHERU7.054e-5786.7260S acidic ribosomal protein P0 OS=Chenopodium rub... [more]
RLA0_CHICK3.623e-5351.2260S acidic ribosomal protein P0 OS=Gallus gallus G... [more]
RLA0_ICTPU1.377e-5259.7660S acidic ribosomal protein P0 OS=Ictalurus punct... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002K07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002K07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186272 ID=CN186272; Name=CN186272; organism=Citrus sinensis; type=EST; length=776bp
TTTTTTTTTTTTTTTTTGGGACAGAATATATATTGTCCTAAATAAACGAT
TATATAAAATAAAAAGGAAACTGAGTCTACAAAAAGCATTAAGAAAATAA
AGCAAACATAACCATAAACGTCAAAATCCTAAGTTATAGCACAAATGACA
GTGCACTTAGTCGAACAAGCTGAAGCCCATATCTTCATCAGACTCCTCAG
CGGGGTCTTCCTTCTTCTCTTCCTCCTTTGCAGCAGCAGCTGGGGCATCA
CCACCGCCAGCAACCGGGGCAGCAGCAACAGCAAACTTGCTTGGGTCCGC
CAGGTACTCCTTCACTTTGTCGGCCTGAGGGAATGAATACTCAGTTGCAA
GAGCAACAGCAACCACATTCTTGTATGCATTGACGAACATGTGTGGAGCA
GCTGCCAGGGTCGGGTATGAGATGGCAAGTGCCAGAGCGGTGACCATTGA
TACACTTGAGGCGAACTTCTCCACTAGGTCATCTTCAGACAGGTCAAGGA
CCTCTGGGCTGTAGACGGAACCGTTTTCATAGACAGACTGGACAACAAGA
CCATAAGAGAAGGGTCTAATCCCAAGCTTTGCAAGCAGGGCTGCCTCAGA
AGATCCCACCTTGTCACCCTTCCTAATAAGCTCCACAGGTGTGATAATTT
CAACAGTACCCTTGTTAATCTTGGTGGGAATGTTAAGCACCTGGAAGAAG
GAGGTCTGGGAGGGGTCGAGACCTGTGTTGCCGGGAGGAACAACCACATC
AATTGGAGCAACCAAACCAACACGAG
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