CN186267

Overview
NameCN186267
Unique NameCN186267
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186267_ssr210 microsatellite CN186267_ssr210:210..221. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10742 contig Csv1_Contig10742:17..811. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186267 vs. ExPASy Swiss-Prot
Match: MYBG_DICDI (Myb-like protein G OS=Dictyostelium discoideum GN=mybG PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.069e-27
Identity = 55/71 (77.46%), Postives = 63/71 (88.73%), Query Frame = 2
Query:  296 SKKIRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGTSEHV 508
            S K RKPYTI+K RE+WT++EH KFLEAL LFDRDWKKIE+F+GSKTVIQIRSHAQKYF+KVQKN T E +
Sbjct:   28 SLKSRKPYTISKQRENWTDEEHQKFLEALTLFDRDWKKIESFVGSKTVIQIRSHAQKYFIKVQKNNTGERI 98          
BLAST of CN186267 vs. ExPASy Swiss-Prot
Match: CCA1_ARATH (Protein CCA1 OS=Arabidopsis thaliana GN=CCA1 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.185e-20
Identity = 45/81 (55.56%), Postives = 60/81 (74.07%), Query Frame = 2
Query:  266 INTMSFAEDPSKKIRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGTSEHV 508
            + T S  ED   K RKPYTITK RE WTE+EH++F+EAL+L+ R W+KIE  + +KT +QIRSHAQK+F KV+K   ++ V
Sbjct:    1 METNSSGEDLVIKTRKPYTITKQRERWTEEEHNRFIEALRLYGRAWQKIEEHVATKTAVQIRSHAQKFFSKVEKEAEAKGV 81          
BLAST of CN186267 vs. ExPASy Swiss-Prot
Match: LHY_ARATH (Protein LHY OS=Arabidopsis thaliana GN=LHY PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 2.091e-19
Identity = 43/74 (58.11%), Postives = 58/74 (78.38%), Query Frame = 2
Query:  266 INTMSFAEDPSKKIRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 487
            ++T +  E+   K RKPYTITK RE WTE EH++FLEAL+L+ R W++IE  IG+KT +QIRSHAQK+F K++K
Sbjct:    1 MDTNTSGEELLAKARKPYTITKQRERWTEDEHERFLEALRLYGRAWQRIEEHIGTKTAVQIRSHAQKFFTKLEK 74          
The following BLAST results are available for this feature:
BLAST of CN186267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
MYBG_DICDI6.069e-2777.46Myb-like protein G OS=Dictyostelium discoideum GN=... [more]
CCA1_ARATH7.185e-2055.56Protein CCA1 OS=Arabidopsis thaliana GN=CCA1 PE=1 ... [more]
LHY_ARATH2.091e-1958.11Protein LHY OS=Arabidopsis thaliana GN=LHY PE=1 SV... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0002K04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002K04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186267 ID=CN186267; Name=CN186267; organism=Citrus sinensis; type=EST; length=795bp
GAGGCTCATTCTTGTCTGACTCGCCAAAAGCTAAGATCAAGGCAAAAACG
AATATTACAATTGAAAACAGAAACTCGATCAGCATTTAACGAATTAGCTT
ATGGTGTCCGTGAACCCGAACCCGGCTCAAGGCTTTTTCTTCTTCGATCC
CATGAATATGGGGCATCCCGGTCCGAATTCTCTCCCGCCAACTGGTAGTT
ACAACGCCGCGACGACGACGAATGATTCTACTACTGCCTCAGCTTCGACT
AAAAGTACAGGTGCAATAAATACTATGTCGTTTGCGGAGGATCCGAGTAA
GAAGATTCGGAAGCCGTACACAATTACTAAATCTAGAGAGAGCTGGACGG
AACAAGAGCACGACAAGTTTCTAGAAGCTCTTCAATTATTTGATCGTGAC
TGGAAGAAGATTGAAGCATTTATTGGATCCAAGACTGTCATTCAGATACG
AAGTCATGCACAAAAGTACTTTCTAAAGGTTCAGAAGAATGGGACAAGTG
AACATGTACCTCCCCCTCGACCAAAGAGAAAAGCAGCTCATCCATACCCA
CAAAAAGCACCTAAAACTGTTCATGGTGTATCACAATTTGGTGGGCAAGT
TCAATCATCAGCAGCTCTGCTTGAACCAGGATATATTTACAGGCCAGACT
CTTCATCTGTGCTTGGAAATCCGGTTCCTGTTGCGGCCTTGTCGCCCTGG
AGTTATGACTCGGTGCCACCAGTGAATGTGTCGCCAGTGACTAAAGATGA
TGTGGGATTGCCTGGATCAAGCAACGCTCAGAATTTCTGCTACAG
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