CN186265

Overview
NameCN186265
Unique NameCN186265
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length797
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN186265 vs. ExPASy Swiss-Prot
Match: BET11_ARATH (Bet1-like SNARE 1-1 OS=Arabidopsis thaliana GN=BET11 PE=1 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.222e-51
Identity = 100/122 (81.97%), Postives = 112/122 (91.80%), Query Frame = 3 
Query:  201 MNSRRDYRNSKVALFDGIEEGGIRASSSYSHEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVIFLIVYYLTR 566
            MN RR+ R  + +LFDGIEEGGIRA+SSYSHEI+EH+NERALEGLQDRV LLKRLSGDINEEVDTHNRML+RMGNDMD+SRG LSGTMD+FK VFETKSSRRM TLVASFV +FL++YYLTR
Sbjct:    1 MNPRREPRGGRSSLFDGIEEGGIRAASSYSHEINEHENERALEGLQDRVILLKRLSGDINEEVDTHNRMLDRMGNDMDSSRGFLSGTMDRFKTVFETKSSRRMLTLVASFVGLFLVIYYLTR 122
[Close]
BLAST of CN186265 vs. ExPASy Swiss-Prot
Match: BET12_ARATH (Bet1-like SNARE 1-2 OS=Arabidopsis thaliana GN=BET12 PE=2 SV=4)

HSP 1 Score: 151.369 bits (381), Expect = 5.513e-36
Identity = 74/129 (57.36%), Postives = 105/129 (81.40%), Query Frame = 3 
Query:  201 MNSRRDYRNSKVALFDGI---EEGGIRASSSYSHEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVIFLIVYYLTR*MIY 578
            MN RR+ R S+ +LFDG+   EEG +RASSSY+H  DE DN+ ALE LQDRV+ LKR++GDI+EEV+ HNR+L+++GN MD++RG++SGT+++FK+VFE KS+R+   L+A FV++FLI+YYL R + Y
Sbjct:    1 MNFRRENRASRTSLFDGLDGLEEGRLRASSSYAH--DERDNDEALENLQDRVSFLKRVTGDIHEEVENHNRLLDKVGNKMDSARGIMSGTINRFKLVFEKKSNRKSCKLIAYFVLLFLIMYYLIRLLNY 127
The following BLAST results are available for this feature:
BLAST of CN186265 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
BET11_ARATH1.222e-5181.97Bet1-like SNARE 1-1 OS=Arabidopsis thaliana GN=BET... [more]
BET12_ARATH5.513e-3657.36Bet1-like SNARE 1-2 OS=Arabidopsis thaliana GN=BET... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0002K03_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002K03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186265 ID=CN186265; Name=CN186265; organism=Citrus sinensis; type=EST; length=797bp
GCGTGTGCCTTTGTGTATAAAATCCGAGCGGCATTTCATCGCCGTCTCCT
TTCTCCCACCAGCTTGTCTGCTGCTGCAAGCGAATTCCTGCTTCACACCA
AAGATAATTTTTTGAAATCATCTGTAGGAACACAATTGAGAATATCGCGA
GGCTGAGCTTAATTTATCTAGAAGCGAAGAAAGGCTGTGATCTTTGAGTC
ATGAATTCTAGAAGGGACTACCGTAATAGTAAAGTCGCACTTTTTGATGG
CATTGAGGAGGGTGGCATCAGAGCCTCCTCTTCTTACTCCCATGAAATTG
ACGAGCATGATAATGAAAGAGCATTGGAAGGATTGCAAGATAGAGTCAAT
CTTCTGAAGAGACTCTCAGGTGATATAAATGAAGAGGTTGACACACACAA
TCGCATGTTGGAACGGATGGGAAATGATATGGATGCTTCAAGAGGAGTCC
TATCAGGAACCATGGATAAGTTTAAAATGGTTTTCGAGACCAAATCGAGC
AGGAGAATGTTTACCCTTGTTGCATCATTTGTGGTCATTTTCCTAATTGT
ATACTATCTCACTAGGTAAATGATCTATGATGTATTTGATAACGCCAGCA
GCTTTATGTTAGAATTGGGATGACCCCATTTTTATGTGGTTATGTAATCA
ATCTTACATGTTGCATGTAAGGAACTCGTTTGTGGTTGTATAAAGAGTTT
GTATTCTATGGAATTGTTATTAAAAGCTTGAAACAAGATACTACATATTA
AAAGAATTCTAGTGTCTACTTATTGGCACTTTAGTTTTATCATCTTA
back to top