CN186250
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN186250 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2) HSP 1 Score: 108.227 bits (269), Expect = 5.673e-23 Identity = 60/141 (42.55%), Postives = 79/141 (56.03%), Query Frame = -1 Query: 429 FGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAA---------TGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRS 824 F DE++Q ++ EM G +C RP+R+G A K A Y Q D N+T+FVGGL V+++ LK +F +GE+V+VKIP GK CGFVQF NR AE A++ L G LG IRLSWGR+ Sbjct: 235 FTDENDQKSALAEMQGQICGDRPIRVGLATPKSKAHVFSPVNVVPVSMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSWGRN 375
BLAST of CN186250 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 4.495e-20 Identity = 51/139 (36.69%), Postives = 80/139 (57.55%), Query Frame = -1 Query: 429 FGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAAT-----GQQYQKATYQNTQGSQG--ENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRS 824 F E EQ ++ M G LC RP+RI A+ K A+ + N Q +Q DP NTT+FVGGL ++++ L+ F +G ++++KIP GK CGFVQ++ ++ AE+A++ + G +G IRL+WG + Sbjct: 231 FSSEKEQQHALMHMQGYLCQGRPLRISVASPKSRASIAADSALGIVPTSTSNRQPNQDLCSMDPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAINTMQGALVGTSHIRLAWGHN 369
BLAST of CN186250 vs. ExPASy Swiss-Prot
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 PE=1 SV=2) HSP 1 Score: 91.6633 bits (226), Expect = 5.495e-18 Identity = 54/174 (31.03%), Postives = 84/174 (48.28%), Query Frame = -1 Query: 429 FGDESEQLRSMTEMNGVLCSTRPMRIGPAATKK---AATGQQYQKATYQNTQG-------------SQGEN--------------------------DPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRS 824 F + EQ +++EM GV + R +++GP + ++ + + ++ N + S G N DPNNTT+F+GGL VT+D L+ F +G +V+VKIP GK CGFVQ+ +R AE A++ + G + +RLSWGRS Sbjct: 212 FTNSDEQQLALSEMQGVFLNGRAIKVGPTSGQQQHVSGNNDYNRSSSSLNNENVDSRFLSKGQSFLSNGNNNMGFKRNHMSQFIYPVQQQPSLNHFTDPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCCGFVQYVDRLSAEAAIAGMQGFPIANSRVRLSWGRS 385
BLAST of CN186250 vs. ExPASy Swiss-Prot
Match: NGR1_YEAST (Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae GN=NGR1 PE=1 SV=2) HSP 1 Score: 89.7373 bits (221), Expect = 2.088e-17 Identity = 44/102 (43.14%), Postives = 61/102 (59.80%), Query Frame = -1 Query: 354 DPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQSDQAQWNGGGYYGFAQGYEA 659 DP NTT+FVGGL P T+ L+++F +G +++V+IP GK CGFV+F R AE ++ L G +GG IRLSWGR S+ + G Y + G A Sbjct: 356 DPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNCGFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWGRPSSSNAKTNSTIMGASQYMSSNGLRA 457 The following BLAST results are available for this feature:
BLAST of CN186250 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 4
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CN186250 ID=CN186250; Name=CN186250; organism=Citrus sinensis; type=EST; length=824bpback to top |