CN186250

Overview
NameCN186250
Unique NameCN186250
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length824
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7934 contig Csv1_Contig7934:27..851. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186250 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 5.673e-23
Identity = 60/141 (42.55%), Postives = 79/141 (56.03%), Query Frame = -1
Query:  429 FGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAA---------TGQQYQKATYQNTQGSQGENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRS 824
            F DE++Q  ++ EM G +C  RP+R+G A  K  A                  Y   Q      D  N+T+FVGGL   V+++ LK +F  +GE+V+VKIP GK CGFVQF NR  AE A++ L G  LG   IRLSWGR+
Sbjct:  235 FTDENDQKSALAEMQGQICGDRPIRVGLATPKSKAHVFSPVNVVPVSMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSWGRN 375          
BLAST of CN186250 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.495e-20
Identity = 51/139 (36.69%), Postives = 80/139 (57.55%), Query Frame = -1
Query:  429 FGDESEQLRSMTEMNGVLCSTRPMRIGPAATKKAAT-----GQQYQKATYQNTQGSQG--ENDPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRS 824
            F  E EQ  ++  M G LC  RP+RI  A+ K  A+            +  N Q +Q     DP NTT+FVGGL  ++++  L+  F  +G ++++KIP GK CGFVQ++ ++ AE+A++ + G  +G   IRL+WG +
Sbjct:  231 FSSEKEQQHALMHMQGYLCQGRPLRISVASPKSRASIAADSALGIVPTSTSNRQPNQDLCSMDPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAINTMQGALVGTSHIRLAWGHN 369          
BLAST of CN186250 vs. ExPASy Swiss-Prot
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 5.495e-18
Identity = 54/174 (31.03%), Postives = 84/174 (48.28%), Query Frame = -1
Query:  429 FGDESEQLRSMTEMNGVLCSTRPMRIGPAATKK---AATGQQYQKATYQNTQG-------------SQGEN--------------------------DPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRS 824
            F +  EQ  +++EM GV  + R +++GP + ++   +      + ++  N +              S G N                          DPNNTT+F+GGL   VT+D L+  F  +G +V+VKIP GK CGFVQ+ +R  AE A++ + G  +    +RLSWGRS
Sbjct:  212 FTNSDEQQLALSEMQGVFLNGRAIKVGPTSGQQQHVSGNNDYNRSSSSLNNENVDSRFLSKGQSFLSNGNNNMGFKRNHMSQFIYPVQQQPSLNHFTDPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCCGFVQYVDRLSAEAAIAGMQGFPIANSRVRLSWGRS 385          
BLAST of CN186250 vs. ExPASy Swiss-Prot
Match: NGR1_YEAST (Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae GN=NGR1 PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 2.088e-17
Identity = 44/102 (43.14%), Postives = 61/102 (59.80%), Query Frame = -1
Query:  354 DPNNTTIFVGGLDPSVTDDILKTVFGQYGELVHVKIPAGKRCGFVQFANRTCAEQALSVLNGTQLGGQSIRLSWGRSPSNKQSDQAQWNGGGYYGFAQGYEA 659
            DP NTT+FVGGL P  T+  L+++F  +G +++V+IP GK CGFV+F  R  AE ++  L G  +GG  IRLSWGR  S+     +   G   Y  + G  A
Sbjct:  356 DPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNCGFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWGRPSSSNAKTNSTIMGASQYMSSNGLRA 457          
The following BLAST results are available for this feature:
BLAST of CN186250 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
YG41_SCHPO5.673e-2342.55Uncharacterized RNA-binding protein C23E6.01c OS=S... [more]
CSX1_SCHPO4.495e-2036.69RNA-binding post-transcriptional regulator csx1 OS... [more]
NAM8_YEAST5.495e-1831.03Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 P... [more]
NGR1_YEAST2.088e-1743.14Negative growth regulatory protein NGR1 OS=Sacchar... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0002J18_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002J18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186250 ID=CN186250; Name=CN186250; organism=Citrus sinensis; type=EST; length=824bp
CGCAATGCAATGATAAAAATAACATCAAGTTCGAAAATACTGCAATATCT
ACCCTGCATGCTACAACCAATCCCATAAATAAATGCTTCAAATACACAAC
ATTGCAGATACTAAATAAAAAGAGAAAAAAAAATCAATAAACTATCTCCA
AGCACTCACATCATCCTCAACAACCAAACAACAAATACCTTCCTAAAATT
CAATTTGATTATGGCTACCCCAGCTTCAAGACTTGCACCATAAATACATC
ACTGCTGTGGCTGTTGGTAAGACCCTGGCTGTTGGTAAGTCCCATATCCA
GGAAAGCCCCCATAGTACATGTTCGGGTCTTGGGTAGGAGGCGCATATCC
ATATGCCTCGTATCCTTGTGCAAAACCATAGTATCCACCACCGTTCCATT
GGGCCTGATCCGACTGTTTGTTTGAAGGACTACGCCCCCATGACAGTCTA
ATGCTTTGTCCTCCTAATTGGGTGCCATTCAAAACTGATAGTGCTTGCTC
CGCACAAGTTCTGTTAGCAAACTGAACAAACCCGCAGCGCTTGCCCGCTG
GTATTTTCACATGAACTAACTCACCATATTGACCAAAAACTGTTTTCAAA
ATGTCATCTGTAACACTAGGATCCAAACCCCCAACAAATATTGTTGTATT
ATTTGGATCATTCTCGCCCTGGCTTCCTTGGGTATTTTGATAAGTAGCTT
TCTGATATTGCTGGCCAGTGGCAGCTTTCTTGGTGGCAGCTGGCCCAATC
CGCATAGGTCTAGTAGAGCAGAGCACGCCATTCATTTCGGTCATGGAACG
CAATTGTTCACTTTCATCCCCAAA
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