CN186244

Overview
NameCN186244
Unique NameCN186244
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2662 contig Csv1_Contig2662:594..1343. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186244 vs. ExPASy Swiss-Prot
Match: SAR1A_ARATH (GTP-binding protein SAR1A OS=Arabidopsis thaliana GN=SAR1A PE=2 SV=1)

HSP 1 Score: 337.035 bits (863), Expect = 6.403e-92
Identity = 167/193 (86.53%), Postives = 173/193 (89.64%), Query Frame = -3
Query:  166 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 744
            MF+ DWFYG+LASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVW                  KERFAESK+ELDALLSDESLA+VPFLILGNKIDIPYAASEDELRYHLGL+NFTTGKGKVNL DSNVRPLEVFMCSIVRKMGYGEGFKW+SQYIK
Sbjct:    1 MFMIDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDESLASVPFLILGNKIDIPYAASEDELRYHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWVSQYIK 193          
BLAST of CN186244 vs. ExPASy Swiss-Prot
Match: SAR1B_ARATH (GTP-binding protein SAR1B OS=Arabidopsis thaliana GN=SAR1B PE=2 SV=1)

HSP 1 Score: 335.109 bits (858), Expect = 2.433e-91
Identity = 169/192 (88.02%), Postives = 170/192 (88.54%), Query Frame = -3
Query:  169 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 744
            MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVW                  KERFAESKRELDALLSDE+LA VPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKV L DS VRPLEVFMCSIVRKMGYGEGFKWLSQYI
Sbjct:    1 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKRELDALLSDEALATVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVTLGDSGVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192          
BLAST of CN186244 vs. ExPASy Swiss-Prot
Match: SAR1A_BRACM (GTP-binding protein SAR1A OS=Brassica campestris GN=SAR1A PE=2 SV=1)

HSP 1 Score: 334.339 bits (856), Expect = 4.150e-91
Identity = 167/193 (86.53%), Postives = 172/193 (89.12%), Query Frame = -3
Query:  166 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 744
            MF+ DWFYG+LASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVW                  KERFAESK+ELDALLSDESLA VPFLILGNKIDIPYAASEDELRYHLGL+NFTTGKGKV+LV SNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK
Sbjct:    1 MFVIDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRYHLGLSNFTTGKGKVDLVGSNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193          
BLAST of CN186244 vs. ExPASy Swiss-Prot
Match: SAR1B_BRACM (GTP-binding protein SAR1B OS=Brassica campestris GN=SAR1B PE=2 SV=1)

HSP 1 Score: 323.168 bits (827), Expect = 9.568e-88
Identity = 164/194 (84.54%), Postives = 168/194 (86.60%), Query Frame = -3
Query:  169 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLV--DSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 744
            MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVW                  KERF+ESK+ELDALLSD++LA VPFLILGNKID PYAASEDELRYHLGLTNFTTGKGKV     DS VRPLEVFMCSIVRKMGYGEGFKWLSQYI
Sbjct:    1 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFSESKKELDALLSDDALATVPFLILGNKIDNPYAASEDELRYHLGLTNFTTGKGKVTTAGGDSGVRPLEVFMCSIVRKMGYGEGFKWLSQYI 194          
BLAST of CN186244 vs. ExPASy Swiss-Prot
Match: SAR2_SOLLC (GTP-binding protein SAR2 OS=Solanum lycopersicum GN=SAR2 PE=2 SV=1)

HSP 1 Score: 317.775 bits (813), Expect = 4.020e-86
Identity = 155/193 (80.31%), Postives = 165/193 (85.49%), Query Frame = -3
Query:  166 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 744
            MFL DWFYG+LASLGLWQK+AKILFLGLDNAGKTTLLHMLKDERLVQHQPTQ+PTSEELSIG IKFKAFDLGGHQIARRVW                  +ERF E+K+ELD LLSDESL NVPFLILGNKIDIPYAASEDELRYHLGLT  TTGKG +NL  +NVRP+EVFMCSIVRKMGYGEGFKW+SQYIK
Sbjct:    1 MFLVDWFYGVLASLGLWQKDAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGNIKFKAFDLGGHQIARRVWRDYYAKVDAVVYLVDANDRERFPEAKKELDGLLSDESLTNVPFLILGNKIDIPYAASEDELRYHLGLTGVTTGKGNINLAGTNVRPIEVFMCSIVRKMGYGEGFKWMSQYIK 193          
BLAST of CN186244 vs. ExPASy Swiss-Prot
Match: SAR1_TOBAC (GTP-binding protein SAR1 OS=Nicotiana tabacum GN=SAR1 PE=2 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.876e-67
Identity = 137/198 (69.19%), Postives = 150/198 (75.76%), Query Frame = -3
Query:  166 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKRELDALLSDESLANVPFLILGN---KIDIPYAA-SEDELRYHLGLTNFT-TGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 744
            MFL DWFYGILA+LGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQ+PTSEELSIGKIKFKAFDLGGHQIARRVW                  KERFAESK+ELDALLS  S     FL L N   +I+ P     +   RYH+G    +   +GKVNL DSNVRP+EVFMCSIVR+MGYGEGF+W+SQYIK
Sbjct:    1 MFLVDWFYGILATLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDSFDKERFAESKKELDALLSGWSSLAHCFLFLDNWVTRIEHPICCLRKMNWRYHMGANGASPLARGKVNLADSNVRPVEVFMCSIVRQMGYGEGFRWMSQYIK 198          
BLAST of CN186244 vs. ExPASy Swiss-Prot
Match: SAR1_USTMA (Small COPII coat GTPase SAR1 OS=Ustilago maydis GN=SAR1 PE=3 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 3.427e-61
Identity = 120/192 (62.50%), Postives = 143/192 (74.48%), Query Frame = -3
Query:  169 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 744
            MF+ +WF+ ILA LGL  K AKILFLGLDNAGKTTLLHMLK++RL   QPT HPTSEEL+IG++KF  +DLGGHQ ARR+W                   ERFAE++ ELDALLS E L++VPFLILGNKID P A SE+ELR  +GL   TTGKGKV L D  +RP+E+FMCS+V + GYGEGF+W+SQYI
Sbjct:    1 MFIINWFWDILAQLGLAHKNAKILFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGQVKFTTYDLGGHQQARRLWKDYFPEVDGIVFLVDTQDHERFAEARAELDALLSIEELSSVPFLILGNKIDAPGAVSEEELRQAIGLYQ-TTGKGKVPLKD--IRPIEIFMCSVVMRQGYGEGFRWISQYI 189          
BLAST of CN186244 vs. ExPASy Swiss-Prot
Match: SAR1_CRYNE (Small COPII coat GTPase SAR1 OS=Cryptococcus neoformans GN=SAR1 PE=3 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 5.845e-61
Identity = 121/192 (63.02%), Postives = 142/192 (73.96%), Query Frame = -3
Query:  169 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 744
            MF+ +WF+ +LASLGL  K AK+LFLGLDNAGKTTLLHMLK++RL   QPT HPTSEEL+IG +KF  +DLGGH  ARR+W                   ERFAESK ELD+LLS ESLA VPFLILGNKID   A SE++LR+ LGL   TTGKGK+ L D  +RP+EVFMCS+V + GYGEGF+WLSQYI
Sbjct:    1 MFIINWFWDVLASLGLMNKSAKLLFLGLDNAGKTTLLHMLKNDRLATLQPTLHPTSEELAIGNVKFTTYDLGGHIQARRLWRDYFPEVDGIVFLVDSADAERFAESKAELDSLLSIESLAQVPFLILGNKIDAYGAVSEEQLRHELGLYQ-TTGKGKIPLRD--IRPIEVFMCSVVMRQGYGEGFRWLSQYI 189          
BLAST of CN186244 vs. ExPASy Swiss-Prot
Match: SAR1_ASPFU (Small COPII coat GTPase sar1 OS=Aspergillus fumigatus GN=sar1 PE=3 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.302e-60
Identity = 121/192 (63.02%), Postives = 139/192 (72.40%), Query Frame = -3
Query:  169 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 744
            M++ +WFY ILASLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT HPTSEEL+IG  +F  FDLGGHQ ARR+W                   ERF ESK ELDALL+ E LA VPFLILGNKID P A SEDELR+ LGL   TTGKGKV L    +RP+EVFMCS+V + GYGEG +WLSQY+
Sbjct:    1 MWIINWFYDILASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVATLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCSVVMRQGYGEGIRWLSQYV 189          
BLAST of CN186244 vs. ExPASy Swiss-Prot
Match: SAR1_NEOFI (Small COPII coat GTPase sar1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=sar1 PE=3 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.701e-60
Identity = 120/192 (62.50%), Postives = 139/192 (72.40%), Query Frame = -3
Query:  169 MFLFDWFYGILASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKRELDALLSDESLANVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVNLVDSNVRPLEVFMCSIVRKMGYGEGFKWLSQYI 744
            M++ +WFY +LASLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT HPTSEEL+IG  +F  FDLGGHQ ARR+W                   ERF ESK ELDALL+ E LA VPFLILGNKID P A SEDELR+ LGL   TTGKGKV L    +RP+EVFMCS+V + GYGEG +WLSQY+
Sbjct:    1 MWIINWFYDVLASLGLLNKHAKLLFLGLDNAGKTTLLHMLKNDRVATLQPTAHPTSEELAIGNNRFTTFDLGGHQQARRLWKDYFPEVSGIVFLVDAKDHERFPESKAELDALLAMEELAKVPFLILGNKIDHPDAVSEDELRHQLGLYQ-TTGKGKVPL--EGIRPIEVFMCSVVMRQGYGEGIRWLSQYV 189          
The following BLAST results are available for this feature:
BLAST of CN186244 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 167
Match NameE-valueIdentityDescription
SAR1A_ARATH6.403e-9286.53GTP-binding protein SAR1A OS=Arabidopsis thaliana ... [more]
SAR1B_ARATH2.433e-9188.02GTP-binding protein SAR1B OS=Arabidopsis thaliana ... [more]
SAR1A_BRACM4.150e-9186.53GTP-binding protein SAR1A OS=Brassica campestris G... [more]
SAR1B_BRACM9.568e-8884.54GTP-binding protein SAR1B OS=Brassica campestris G... [more]
SAR2_SOLLC4.020e-8680.31GTP-binding protein SAR2 OS=Solanum lycopersicum G... [more]
SAR1_TOBAC1.876e-6769.19GTP-binding protein SAR1 OS=Nicotiana tabacum GN=S... [more]
SAR1_USTMA3.427e-6162.50Small COPII coat GTPase SAR1 OS=Ustilago maydis GN... [more]
SAR1_CRYNE5.845e-6163.02Small COPII coat GTPase SAR1 OS=Cryptococcus neofo... [more]
SAR1_ASPFU1.302e-6063.02Small COPII coat GTPase sar1 OS=Aspergillus fumiga... [more]
SAR1_NEOFI1.701e-6062.50Small COPII coat GTPase sar1 OS=Neosartorya fische... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002J15_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002J15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186244 ID=CN186244; Name=CN186244; organism=Citrus sinensis; type=EST; length=749bp
TTTTTTTTAAGTCTTGTAACAGGATGGACGTTGCATGCCTTTTATTTCAT
AGGCGAAATGGGAGAATACAAGAATCTCCCCTTTTTAAAGGAAACGCATC
AACCTCAATTCATTGTGTAAACAACATATAAAGAAAGAACCGAACAAATT
CTACTTCTTGCTCTACTTGATGTACTGAGACAGCCACTTAAATCCCTCTC
CGTAACCCATTTTGCGGACAATGCTGCACATGAATACCTCAAGGGGACGA
ACGTTTGAATCAACCAGATTCACCTTACCCTTGCCAGTGGTGAAGTTGGT
CAGTCCAAGGTGATATCGCAACTCATCTTCTGATGCAGCATATGGGATAT
CAATTTTGTTGCCCAAAATTAGGAATGGAACATTGGCCAAGGATTCATCT
GAAAGCAGGGCATCAAGCTCCCTTTTTGACTCAGCAAACCTCTCCTTGTC
ATACGCATCTACCAGGTACACAACCGCATCAACCTTGGCGTAGTAATCTT
TCCAAACTCTACGAGCAATCTGATGCCCTCCCAAATCAAAAGCCTTAAAC
TTGATTTTCCCAATACTCAGTTCCTCCGAAGTGGGATGTTGTGTTGGTTG
ATGTTGAACTAATCTCTCATCTTTCAACATATGAAGCAGCGTCGTTTTAC
CGGCATTATCGAGGCCGAGAAACAAGATCTTGGCCTCTTTTTGCCAGAGC
CCAAGAGATGCAAGAATCCCATAAAACCAATCAAACAAAAACATGGGTT
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