CN186243

Overview
NameCN186243
Unique NameCN186243
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length473
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2614 contig Csv1_Contig2614:185..658. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186243 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.944e-21
Identity = 42/66 (63.64%), Postives = 53/66 (80.30%), Query Frame = 2
Query:   23 MAHTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVLDFLAAETEGNCPCGPTCACVNCTCG 220
            M+ TCGNCDCAD++QCVKKGSSY AD +ET+ S ++  VV+D  AAE +G C CGP+C+C NCTCG
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of CN186243 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.512e-17
Identity = 38/64 (59.38%), Postives = 46/64 (71.88%), Query Frame = 2
Query:   32 TCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVLDFLAAETEGNCPCGPTCACVNCTCGS 223
            TCGNCDC D+SQCVKKG+SY  D VET+ S+V  V+V    AAE +G C CG  CAC +C CG+
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of CN186243 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 6.353e-16
Identity = 39/65 (60.00%), Postives = 46/65 (70.77%), Query Frame = 2
Query:   23 MAHTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVLDFLAAETEGNCPCGPTCACVNCTC 217
            M+  CGNCDCAD SQCVKKG+S   D VETD S++   VV+   AAE+ G C CG +C CVNCTC
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNS--IDIVETDKSYIED-VVMGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of CN186243 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.025e-15
Identity = 37/66 (56.06%), Postives = 45/66 (68.18%), Query Frame = 2
Query:   23 MAHTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVLDFLAAETEGNCPCGPTCACVNCTCG 220
            M+  C NCDCAD +QCVKKG+SY    VET+   + TV V D  AAE +G C CG  C+CV+CTCG
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCKCGTGCSCVSCTCG 65          
BLAST of CN186243 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 9.174e-15
Identity = 35/65 (53.85%), Postives = 44/65 (67.69%), Query Frame = 2
Query:   23 MAHTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVLDFLAAETEGNCPCGPTCACVNCTC 217
            M+  C NCDC+D SQC KKG S+    VET+   + TV+ +D  AAE  GNC CGP+CACV+C C
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDTVI-MDAPAAENGGNCKCGPSCACVDCKC 64          
BLAST of CN186243 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 7.767e-14
Identity = 33/66 (50.00%), Postives = 40/66 (60.61%), Query Frame = 2
Query:   23 MAHTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVLDFLAAETEGNCPCGPTCACVNCTCG 220
            M+  CGNCDCAD+SQCVKKG+SY    VE + S    V      A E  G C CG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFEEVA-----AGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CN186243 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 7.767e-14
Identity = 33/66 (50.00%), Postives = 40/66 (60.61%), Query Frame = 2
Query:   23 MAHTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVLDFLAAETEGNCPCGPTCACVNCTCG 220
            M+  CGNCDCAD+SQCVKKG+SY    VE + S    V      A E  G C CG +C+C +C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFEEVA-----AGEENGGCKCGTSCSCTDCKCG 61          
BLAST of CN186243 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSJ (Metallothionein-like protein 3B OS=Oryza sativa subsp. japonica GN=MT3B PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 9.494e-12
Identity = 29/66 (43.94%), Postives = 38/66 (57.58%), Query Frame = 2
Query:   23 MAHTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVLDFLAAETEGNCPCGPTCACVNCTCG 220
            M+  CGNCDCAD+SQCVKKG+SY    V+ + S       + +   E +G C C   C+C  C CG
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVDAEKSHFEMAEEVGY--EENDGKCKCTTGCSCAGCNCG 64          
BLAST of CN186243 vs. ExPASy Swiss-Prot
Match: MT3B_ORYSI (Metallothionein-like protein 3B OS=Oryza sativa subsp. indica GN=MT3B PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.608e-11
Identity = 28/66 (42.42%), Postives = 38/66 (57.58%), Query Frame = 2
Query:   23 MAHTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTVVVLDFLAAETEGNCPCGPTCACVNCTCG 220
            M+  CG+CDCAD+SQCVKKG+SY    V+ + S       + +   E +G C C   C+C  C CG
Sbjct:    1 MSDKCGHCDCADKSQCVKKGTSYGVVIVDAEKSHFEMAEEVGY--EENDGKCKCTTGCSCAGCNCG 64          
The following BLAST results are available for this feature:
BLAST of CN186243 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
MT3_CARPA2.944e-2163.64Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_MUSAC1.512e-1759.38Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_ACTDE6.353e-1660.00Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_MALDO7.025e-1556.06Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3_PRUAV9.174e-1553.85Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3A_ORYSJ7.767e-1450.00Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI7.767e-1450.00Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3B_ORYSJ9.494e-1243.94Metallothionein-like protein 3B OS=Oryza sativa su... [more]
MT3B_ORYSI3.608e-1142.42Metallothionein-like protein 3B OS=Oryza sativa su... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0002J14_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002J14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186243 ID=CN186243; Name=CN186243; organism=Citrus sinensis; type=EST; length=473bp
CCAAGTGCTAAGCTCAATCAACATGGCCCACACCTGCGGCAACTGCGACT
GCGCTGACAGGAGCCAGTGTGTGAAGAAGGGAAGCAGCTATGCTGCTGAC
TTCGTCGAGACTGACTTGAGCTTTGTCAGCACCGTTGTTGTCTTGGACTT
TCTTGCTGCTGAGACTGAAGGTAACTGCCCGTGCGGCCCCACCTGCGCTT
GTGTGAACTGCACTTGTGGTAGTCACTAATAAGCAAACACATGCAGCAAA
AAATAAGAAGCTGCAAGTGTGCCTAAATATTGTGGGGGTTAAGAATAATG
TAAGGGTGATTAAAAAAAAAGAAAAATTCTCTACTTCGTTTTTATGATGG
TCTACTACTAGTGTGTGGAGTGATGTGCGTGTTGTGTCACCCATCACTCG
TAATGTTTTGTGTTTCCTTCTTCATAATCATGTAATATATGGCCATGGCC
ATGACCGTGGCCTTGTGTGGTTT
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