CN186237

Overview
NameCN186237
Unique NameCN186237
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length795
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186237_ssr490 microsatellite CN186237_ssr490:490..501. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1683 contig Csv1_Contig1683:417..1211. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186237 vs. ExPASy Swiss-Prot
Match: AGL8_SOLTU (Agamous-like MADS-box protein AGL8 homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.499e-21
Identity = 67/168 (39.88%), Postives = 88/168 (52.38%), Query Frame = -3
Query:  332 WTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISXXXXXXXXXXXXXXXXXXXXXXXXXXLSXXXXXXXXXXQLNHDWNSSNVHLMQTLTN----SSYQ----------MGGGSGEEDEDTPTGHRANALLPAWMLRHLH 793
            WTLE++KLKAR+EVLQRNQKH++GEDL  L++KELQ++E Q+DS LK IRSRKNQLM +SIS                          ++            NH+ NSS   L Q L +     +YQ           GG S ++      G   N ++P WMLRHL+
Sbjct:   91 WTLEHAKLKARLEVLQRNQKHYVGEDLESLNMKELQNLEHQLDSALKHIRSRKNQLMHESISVLQKQDRALQEQNNQLSKKVKEREKEVAQQNQWDQQ----NHEINSSTFVLPQQLDSPHLGEAYQNTNVVDNGEVEGGNSSQQQ-----GAANNTVMPQWMLRHLN 249          
BLAST of CN186237 vs. ExPASy Swiss-Prot
Match: AGL8_SOLLC (Agamous-like MADS-box protein AGL8 homolog OS=Solanum lycopersicum GN=TDR4 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.657e-19
Identity = 46/62 (74.19%), Postives = 55/62 (88.71%), Query Frame = -3
Query:  608 WTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 793
            WTLE+ KLKAR+EVLQRNQKH++GEDL  LS+KELQ++E Q+DS LK IRSRKNQLM +SIS
Sbjct:   91 WTLEHRKLKARLEVLQRNQKHYVGEDLESLSMKELQNLEHQLDSALKHIRSRKNQLMHESIS 152          
BLAST of CN186237 vs. ExPASy Swiss-Prot
Match: AGL8_ARATH (Agamous-like MADS-box protein AGL8 OS=Arabidopsis thaliana GN=AGL8 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 8.784e-18
Identity = 64/156 (41.03%), Postives = 82/156 (52.56%), Query Frame = -3
Query:  341 WTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISXXXXXXXXXXXXXXXXXXXXXXXXXXLSXXXXXXXXXXQLNHDWNSSNVHLMQTLTNSS-----YQMGGGSGEEDEDTPTGHRANALLPAWMLR 793
            W LE++KLKAR+EVL++N+++FMGEDL  LSLKELQS+E Q+D+ +K IRSRKNQ M +SIS                                      QL    NSS+V L Q    SS      ++GG +G     T      N+LLPAWMLR
Sbjct:   91 WVLEHAKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQLDAAIKSIRSRKNQAMFESIS------ALQKKDKALQDHNNSLLKKIKEREKKTGQQEGQLVQCSNSSSVLLPQYCVTSSRDGFVERVGGENGGASSLT----EPNSLLPAWMLR 236          
BLAST of CN186237 vs. ExPASy Swiss-Prot
Match: AGL8_SOLCO (Agamous-like MADS-box protein AGL8 homolog OS=Solanum commersonii GN=SCM1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.338e-17
Identity = 59/163 (36.20%), Postives = 81/163 (49.69%), Query Frame = -3
Query:  332 WTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISXXXXXXXXXXXXXXXXXXXXXXXXXXLSXXXXXXXXXXQLNHDWNSS---------NVHLMQTLTNSSYQMGGGSGEEDEDTPTGHRANALLPAWMLRHLH 793
            WTLE +KLKAR+EVLQRN+K ++GEDL  L++KELQ++E Q+ S LK IRSRKNQLM +SIS                          +             NH+ NSS         + HL +   N++    G     +     G   N ++P WM+RHL+
Sbjct:   91 WTLENAKLKARLEVLQRNEKLYVGEDLESLNMKELQNLEHQLASALKHIRSRKNQLMHESISVLQKQDRALQEQNNQLSKKVKEREKEVEQQNQWDQQ----NHEINSSTFVLPQQLDSPHLGEASQNTNVVDNGEVEGGNSSQXQGAANNTVMPQWMVRHLN 249          
BLAST of CN186237 vs. ExPASy Swiss-Prot
Match: AGL8_SINAL (Agamous-like MADS-box protein AGL8 homolog OS=Sinapis alba GN=AGL8 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.359e-17
Identity = 58/151 (38.41%), Postives = 77/151 (50.99%), Query Frame = -3
Query:  341 WTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSISXXXXXXXXXXXXXXXXXXXXXXXXXXLSXXXXXXXXXXQLNHDWNSSNVHLMQTLTNSSYQMGGGSGEEDEDTPTGHRANALLPAWMLR 793
            W LE++KLKAR+EVL++N+++FMGEDL  LSLKELQS+E Q+ + +K IRSRKNQ M +SIS                                       +    NSS +     LT+S     G    E+E   +    N+LLPAWMLR
Sbjct:   91 WVLEHAKLKARVEVLEKNKRNFMGEDLDSLSLKELQSLEHQLHAAIKSIRSRKNQAMFESIS-----ALQKKDKVLQDHNNALLKKIKEREKNTVHQEVQLIQCSNNSSILQPQYCLTSSRDGFVGRVEGENEGASSLAEPNSLLPAWMLR 236          
BLAST of CN186237 vs. ExPASy Swiss-Prot
Match: AP1_SINAL (Floral homeotic protein APETALA 1 OS=Sinapis alba GN=AP1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.690e-16
Identity = 38/62 (61.29%), Postives = 55/62 (88.71%), Query Frame = -3
Query:  608 WTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 793
            W++EY++LKA++E+L+RNQ+H++GEDL  +S KELQ++EQQ+D+ LK IRSRKNQLM  SI+
Sbjct:   91 WSMEYNRLKAKIELLERNQRHYLGEDLQAMSSKELQNLEQQLDTALKHIRSRKNQLMHDSIN 152          
BLAST of CN186237 vs. ExPASy Swiss-Prot
Match: AP1_ARATH (Floral homeotic protein APETALA 1 OS=Arabidopsis thaliana GN=AP1 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.690e-16
Identity = 37/62 (59.68%), Postives = 56/62 (90.32%), Query Frame = -3
Query:  608 WTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 793
            W++EY++LKA++E+L+RNQ+H++GEDL  +S KELQ++EQQ+D+ LK IR+RKNQLM +SI+
Sbjct:   91 WSMEYNRLKAKIELLERNQRHYLGEDLQAMSPKELQNLEQQLDTALKHIRTRKNQLMYESIN 152          
BLAST of CN186237 vs. ExPASy Swiss-Prot
Match: CAL_ARATH (Transcription factor CAULIFLOWER OS=Arabidopsis thaliana GN=CAL PE=1 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 4.820e-16
Identity = 36/62 (58.06%), Postives = 57/62 (91.94%), Query Frame = -3
Query:  608 WTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 793
            W++EYS+LKA++E+L+RNQ+H++GE+L  +SLK+LQ++EQQ+++ LK IRSRKNQLM +S++
Sbjct:   93 WSMEYSRLKAKIELLERNQRHYLGEELEPMSLKDLQNLEQQLETALKHIRSRKNQLMNESLN 154          
BLAST of CN186237 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSJ (MADS-box transcription factor 14 OS=Oryza sativa subsp. japonica GN=MADS14 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 4.080e-15
Identity = 39/62 (62.90%), Postives = 51/62 (82.26%), Query Frame = -3
Query:  608 WTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 793
            W  EY KLKA++E +Q+ QKH MGEDL  L+LKELQ +EQQ+++ LK IRSRK+QLML+SI+
Sbjct:   91 WCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESIN 152          
BLAST of CN186237 vs. ExPASy Swiss-Prot
Match: MAD14_ORYSI (MADS-box transcription factor 14 OS=Oryza sativa subsp. indica GN=MADS14 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.080e-15
Identity = 39/62 (62.90%), Postives = 51/62 (82.26%), Query Frame = -3
Query:  608 WTLEYSKLKARMEVLQRNQKHFMGEDLADLSLKELQSVEQQIDSGLKLIRSRKNQLMLQSIS 793
            W  EY KLKA++E +Q+ QKH MGEDL  L+LKELQ +EQQ+++ LK IRSRK+QLML+SI+
Sbjct:   91 WCHEYRKLKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESIN 152          
The following BLAST results are available for this feature:
BLAST of CN186237 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
AGL8_SOLTU6.499e-2139.88Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AGL8_SOLLC4.657e-1974.19Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AGL8_ARATH8.784e-1841.03Agamous-like MADS-box protein AGL8 OS=Arabidopsis ... [more]
AGL8_SOLCO3.338e-1736.20Agamous-like MADS-box protein AGL8 homolog OS=Sola... [more]
AGL8_SINAL4.359e-1738.41Agamous-like MADS-box protein AGL8 homolog OS=Sina... [more]
AP1_SINAL3.690e-1661.29Floral homeotic protein APETALA 1 OS=Sinapis alba ... [more]
AP1_ARATH3.690e-1659.68Floral homeotic protein APETALA 1 OS=Arabidopsis t... [more]
CAL_ARATH4.820e-1658.06Transcription factor CAULIFLOWER OS=Arabidopsis th... [more]
MAD14_ORYSJ4.080e-1562.90MADS-box transcription factor 14 OS=Oryza sativa s... [more]
MAD14_ORYSI4.080e-1562.90MADS-box transcription factor 14 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002J09_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002J09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186237 ID=CN186237; Name=CN186237; organism=Citrus sinensis; type=EST; length=795bp
TTTTTTTTTTTAAGAATTAGCATGTATTGAATTTCTAATCATTCCTCTTA
TCATCCAATACTACAAATCTTCGGTGATTCAGTCCATTATAACATAGAAG
ATTACATGCAAGCTGAAAGTGGATATTGAAATGGTGTACATACCCTTATA
CAAAGTATCAATAGTACATATAACAAACCTTTTTACAGCTCTGGGCATAT
AATATAACCATGTTAAGATGAGTGCTCGTCCATATACATATATCAATTTC
TTGTTCTGATTAATTTCATTAAGCAAAATATGAATCGCACATACTGATAG
TAATCAAGAACTCATGATCTGTAAATTATTAATGAAGGTGACGAAGCATC
CAAGCGGGCAGCAGAGCGTTAGCTCGATGTCCTGTCGGAGTATCCTCGTC
CTCCTCTCCGCTGCCCCCTCCCATTTGGTAAGAGCTATTGGTCAATGTCT
GCATTAGATGAACATTGGATGAGTTCCAGTCATGATTTAGCTGCTGCTGC
TGTTCCCTGCACTGCGCCTCTTGGCTCAGTAGCTTCTCCTTTTCTTTTAC
CTTCTTTGCAAGCAAGTTGTTTTGCTCTTTCAATAACTTGTCCTTTTTCT
GAAGCTCTGAAATGGATTGAAGCATGAGTTGGTTCTTTCTTGATCGAATG
AGTTTAAGACCAGAATCAATCTGCTGCTCTACACTTTGAAGCTCTTTGAG
ACTTAAGTCTGCAAGATCCTCTCCCATGAAATGCTTTTGATTTCTTTGTA
AAACCTCCATCCTAGCTTTAAGCTTGGAATATTCCAATGTCCAGT
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