CN186227

Overview
NameCN186227
Unique NameCN186227
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9397 contig Csv1_Contig9397:761..1463. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN186227 vs. ExPASy Swiss-Prot
Match: ERI2_MOUSE (ERI1 exoribonuclease 2 OS=Mus musculus GN=Eri2 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.694e-14
Identity = 39/95 (41.05%), Postives = 55/95 (57.89%), Query Frame = -1 
Query:  398 AVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGGVRCNLKEAVEMAGLAWQGRAHCGLDDAKNTARLLALLMHRGFKFSITNSL 682
            A VTWS+WD  V LE ECR K++ KP + N WI+L+  +   +      L  A++  G+ + GR H GLDD++NTA L   ++  G    IT SL
Sbjct:  148 AFVTWSDWDLGVCLEYECRRKQLLKPVFLNSWIDLRATYRLFYKRKPKGLSGALQEVGIEFSGREHSGLDDSRNTALLAWKMIRDGCLMKITRSL 242
[Close]
BLAST of CN186227 vs. ExPASy Swiss-Prot
Match: ERI2_HUMAN (ERI1 exoribonuclease 2 OS=Homo sapiens GN=ERI2 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.075e-13
Identity = 38/95 (40.00%), Postives = 55/95 (57.89%), Query Frame = -1 
Query:  398 AVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGGVRCNLKEAVEMAGLAWQGRAHCGLDDAKNTARLLALLMHRGFKFSITNSL 682
            A VTWS+WD  V LE EC+ K++ KP + N WI+L+  +   +      L  A++  G+ + GR H GLDD++NTA L   ++  G    IT SL
Sbjct:  148 AFVTWSDWDLGVCLEYECKRKQLLKPVFLNSWIDLRATYKLFYRRKPKGLSGALQEVGIEFSGREHSGLDDSRNTALLAWKMIRDGCVMKITRSL 242
[Close]
BLAST of CN186227 vs. ExPASy Swiss-Prot
Match: ERI2_XENLA (ERI1 exoribonuclease 2 OS=Xenopus laevis GN=eri2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.335e-13
Identity = 38/95 (40.00%), Postives = 55/95 (57.89%), Query Frame = -1 
Query:  398 AVVTWSNWDCRVMLESECRFKKIWKPPYFNRWINLKVPFHEVFGGVRCNLKEAVEMAGLAWQGRAHCGLDDAKNTARLLALLMHRGFKFSITNSL 682
            A VTWS+WD  V L  ECR K++ KP   N WI+L+  +   +      L  A++  G+ + GR H GLDD++NTA+L + ++  G    IT SL
Sbjct:  148 AFVTWSDWDLGVCLLYECRRKQMKKPDILNSWIDLRATYKLFYNRRPKGLNGALQDLGIEFSGREHSGLDDSRNTAKLASRMICDGCVMKITKSL 242
The following BLAST results are available for this feature:
BLAST of CN186227 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ERI2_MOUSE3.694e-1441.05ERI1 exoribonuclease 2 OS=Mus musculus GN=Eri2 PE=... [more]
ERI2_HUMAN1.075e-1340.00ERI1 exoribonuclease 2 OS=Homo sapiens GN=ERI2 PE=... [more]
ERI2_XENLA5.335e-1340.00ERI1 exoribonuclease 2 OS=Xenopus laevis GN=eri2 P... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0002J02_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002J02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186227 ID=CN186227; Name=CN186227; organism=Citrus sinensis; type=EST; length=703bp
TTTTTTTTTTTTTTCCTAACTTTTCTGTTTTTATATTTTTACCTTTTTTT
CATCCTTTTACATAAGACATCTATTGAAGAGTTCAATATGTCATCAAGGA
AAGATGGAGAAATCCTTCCATACTTTTCAGTCAAGCAGTAGTAAAGGCCC
ATTCAAAGAAATGACAGCGGGCACCTCTAGTGACAGTCCAGTTTCCGCAC
CCAAAGAAAACACTCCCTTGTTTTGGTCCAGGCTTCCGAACCATCCCTTT
GCTGCTCTTCACCCCACAAAAACAACTAGGATGATACTGGAATATGGAAT
TTTGCAGATCCTTTTGTTTGTGCAACTGATGTGGTGGAAGAAATATGCGT
TCAGGGAACTGATTCCATGTCAGAGAACCATCATTTGTCTGCCACATCAA
AGAGTTTGTAATGGAGAATTTGAAACCTCTGTGCATGAGGAGTGCAAGTA
GGCGAGCAGTATTTTTCGCATCATCTAGGCCACAGTGTGCACGGCCTTGC
CATGCCAGGCCTGCCATCTCAACAGCTTCTTTTAAATTGCACCTCACTCC
ACCAAAAACCTCATGAAATGGAACTTTTAAGTTGATCCATCTGTTAAAAT
AAGGAGGTTTCCAAATCTTTTTGAATCGGCATTCAGATTCCAACATTACC
CGACAATCCCAATTTGACCATGTCACGACAGCAAAGTTGGTGTTTTTTAT
GCC
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