CX043690

Overview
NameCX043690
Unique NameCX043690
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length763
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX043690_ssr12 microsatellite CX043690_ssr12:12..33. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1895 contig Csv1_Contig1895:32..794. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX043690 vs. ExPASy Swiss-Prot
Match: ZFP1_WHEAT (Zinc finger protein 1 OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 9.142e-25
Identity = 80/217 (36.87%), Postives = 92/217 (42.40%), Query Frame = 1
Query:  139 EANLHCLEPWTKRKRSKRPHNPPTEEEYLALCLVMLARGTTSTAVLTNCNTTTAASQRQKXXXXXXXXXXXXXDQKLLFKCSVCDKAFSSYQALGGHKASHR--KGSGGGDEHXXXXXXXXXXXXXXXGV-----------PNATGRTHECSICHKSFPTGQALGGHKRCHYDGG-----------EKXXXXXXXXXXXXXXXXXRDFDLNLPVLPE 717
            E + H L+ W KRKRS+R  +   EEE LALCL+ML+RG           +  A    +                   FKCSVC K+FSSYQALGGHK SHR  + S   D                                AT R H CSIC K FPTGQALGGHKR HYDGG                              R FDLN+P +PE
Sbjct:   34 EESGHVLQGWAKRKRSRRQRS---EEENLALCLLMLSRGGKQRVQAPQPESFAAPVPAE-------------------FKCSVCGKSFSSYQALGGHKTSHRVKQPSPPSDAAAAPLVALPAVAAILPSAEPATSSTAASSDGATNRVHRCSICQKEFPTGQALGGHKRKHYDGGVGAAASSTELLAAAAAESEVGSTGNGSSAARAFDLNIPAVPE 228          
The following BLAST results are available for this feature:
BLAST of CX043690 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ZFP1_WHEAT9.142e-2536.87Zinc finger protein 1 OS=Triticum aestivum PE=2 SV... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS07_12G12_g Parent Washington Navel Orange Thrip-Challenged Flavedo cDNA Library UCRCS07 Citrus sinensis cDNA clone UCRCS07-12G12-M24-1-7.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX043690 ID=CX043690; Name=CX043690; organism=Citrus sinensis; type=EST; length=763bp
CTGAAATTAAGCTCTCTCTCTCTCTCTCTCTCTCGCTCTTTCACACTCAC
TCTTGGTTTTAGATTCAAAAGAGTAACGGAGATGGCACTGGAAGCTCTCA
ACTCTCCAACTACTTCGACGCCGCCGTTTCACTTCGAAGAAGCTAATCTT
CACTGCCTTGAGCCATGGACCAAACGCAAGCGCTCAAAGCGTCCACACAA
TCCTCCAACTGAAGAAGAGTATCTCGCGCTCTGCCTCGTCATGCTTGCAC
GTGGCACAACCTCCACCGCCGTCTTAACTAACTGCAACACGACCACCGCC
GCCTCACAGCGACAGAAGTCTCCTGCTCTATCTACTGCTGCAACGACGTC
GTCCTCTGACCAGAAGCTTCTCTTCAAGTGCAGCGTGTGCGACAAGGCGT
TTTCTTCTTACCAAGCCTTGGGTGGTCACAAGGCCAGCCACCGTAAGGGA
TCTGGGGGCGGCGATGAACACTCCGCATCCACTACCACCAACACCAACGC
AACCGCCACGACCACCGGCGTACCGAACGCCACTGGTAGGACCCACGAGT
GTTCCATCTGTCACAAGTCCTTCCCCACTGGCCAAGCCTTGGGCGGACAC
AAACGTTGTCACTACGATGGCGGCGAGAAGAGCGGAGTGACGTCATCCGG
ATCCAGTAGCACTCACAGCCAAGTCAGCCACCGTGACTTTGACCTCAACC
TCCCTGTCTTACCGGAGCTCTCCCCTGCTTTCTTCGTCTCCGGTGATGAC
GAGGTGGAGAGTC
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