CN186219
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN186219 vs. ExPASy Swiss-Prot
Match: SPT42_ARATH (Transcription elongation factor SPT4 homolog 2 OS=Arabidopsis thaliana GN=At5g63670 PE=2 SV=1) HSP 1 Score: 172.94 bits (437), Expect = 7.165e-43 Identity = 75/91 (82.42%), Postives = 87/91 (95.60%), Query Frame = -1 Query: 228 VKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVPPKR 500 VKTYDQFR++GCENCPFFKM+EDHER+V+ TTPNFNGIISVMDP+RSWAARWLRIG+F PGCYTLAVSE LPE++Q+LC++ERVQYV PKR Sbjct: 25 VKTYDQFRDAGCENCPFFKMEEDHERIVEVTTPNFNGIISVMDPSRSWAARWLRIGKFAPGCYTLAVSEPLPEEMQHLCQEERVQYVLPKR 115
BLAST of CN186219 vs. ExPASy Swiss-Prot
Match: SPT41_ARATH (Transcription elongation factor SPT4 homolog 1 OS=Arabidopsis thaliana GN=At5g08565 PE=3 SV=3) HSP 1 Score: 171.4 bits (433), Expect = 2.085e-42 Identity = 74/91 (81.32%), Postives = 85/91 (93.41%), Query Frame = -1 Query: 228 VKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVPPKR 500 VKTYDQFR+SGCENCPFFK+++DHER+VD TTPNFNGIIS+MDP RSWAARWLRIG+F PGCYTLAVSEALPE++Q +C+ RVQYVPPKR Sbjct: 25 VKTYDQFRDSGCENCPFFKIEDDHERIVDVTTPNFNGIISMMDPRRSWAARWLRIGKFAPGCYTLAVSEALPEEMQFICQQARVQYVPPKR 115
BLAST of CN186219 vs. ExPASy Swiss-Prot
Match: SPT4_NEUCR (Transcription elongation factor spt-4 OS=Neurospora crassa GN=spt-4 PE=3 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 1.274e-15 Identity = 35/89 (39.33%), Postives = 55/89 (61.80%), Query Frame = -1 Query: 237 VKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVP 500 V TY +FR+ GC NC F + +++ CT+ F GII++ +P +SW A+W R+ +V G Y VS LP+D++ ED+ +QY+P Sbjct: 23 VMTYARFRDEGCPNCEDFLHLQGSPDQIDSCTSQVFEGIITIANPQKSWVAKWQRLDGYVKGVYATKVSGQLPDDVRTTLEDDGIQYIP 111
BLAST of CN186219 vs. ExPASy Swiss-Prot
Match: SPT4_GIBZE (Transcription elongation factor SPT4 OS=Gibberella zeae GN=SPT4 PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 1.408e-14 Identity = 34/88 (38.64%), Postives = 57/88 (64.77%), Query Frame = -1 Query: 237 TYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDE-RVQYVP 494 T +F+ GC NC F + +++ CT+ F G+I++ +PT+SW A++ R+ +VPG Y + VS LP+D+++ EDE R+QY+P Sbjct: 2 TSQRFQNEGCPNCEEFLHLQHSPDQIESCTSQVFEGVITLANPTKSWIAKYQRLDSYVPGMYAIKVSGQLPDDVRSTLEDEYRIQYIP 89
BLAST of CN186219 vs. ExPASy Swiss-Prot
Match: SPT4H_MACFA (Transcription elongation factor SPT4 OS=Macaca fascicularis GN=SUPT4H1 PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 1.408e-14 Identity = 35/87 (40.23%), Postives = 53/87 (60.92%), Query Frame = -1 Query: 243 VKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQY 500 VKT DQF GC+NC + +M + E V DCT+ +F+GII++M P SW ++W R+ F PG Y ++V+ LP+ + + V Y Sbjct: 22 VKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108
BLAST of CN186219 vs. ExPASy Swiss-Prot
Match: SPT4H_HUMAN (Transcription elongation factor SPT4 OS=Homo sapiens GN=SUPT4H1 PE=1 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 1.408e-14 Identity = 35/87 (40.23%), Postives = 53/87 (60.92%), Query Frame = -1 Query: 243 VKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQY 500 VKT DQF GC+NC + +M + E V DCT+ +F+GII++M P SW ++W R+ F PG Y ++V+ LP+ + + V Y Sbjct: 22 VKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108
BLAST of CN186219 vs. ExPASy Swiss-Prot
Match: SPT4H_BOVIN (Transcription elongation factor SPT4 OS=Bos taurus GN=SUPT4H1 PE=3 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 1.408e-14 Identity = 35/87 (40.23%), Postives = 53/87 (60.92%), Query Frame = -1 Query: 243 VKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQY 500 VKT DQF GC+NC + +M + E V DCT+ +F+GII++M P SW ++W R+ F PG Y ++V+ LP+ + + V Y Sbjct: 22 VKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108
BLAST of CN186219 vs. ExPASy Swiss-Prot
Match: SPT41_MOUSE (Transcription elongation factor SPT4 1 OS=Mus musculus GN=Supt4h1 PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 1.408e-14 Identity = 35/87 (40.23%), Postives = 53/87 (60.92%), Query Frame = -1 Query: 243 VKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQY 500 VKT DQF GC+NC + +M + E V DCT+ +F+GII++M P SW ++W R+ F PG Y ++V+ LP+ + + V Y Sbjct: 22 VKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108
BLAST of CN186219 vs. ExPASy Swiss-Prot
Match: SPT4H_PONAB (Transcription elongation factor SPT4 OS=Pongo abelii GN=SUPT4H1 PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 1.839e-14 Identity = 35/87 (40.23%), Postives = 53/87 (60.92%), Query Frame = -1 Query: 243 VKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQY 500 VKT DQF GC+NC + +M + E V DCT+ +F+GII++M P SW ++W R+ F PG Y ++V+ LP+ + + V Y Sbjct: 22 VKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPGDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108
BLAST of CN186219 vs. ExPASy Swiss-Prot
Match: SPT4H_DROME (Transcription elongation factor SPT4 OS=Drosophila melanogaster GN=spt4 PE=1 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 1.839e-14 Identity = 35/74 (47.30%), Postives = 49/74 (66.22%), Query Frame = -1 Query: 282 VKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPE 500 VK++DQF GCENC F +M + + V D T+ NF+GII++ PT SW A+W R+ RF G Y ++VS LP+ Sbjct: 22 VKSFDQFETDGCENCEEFLRMKNNKDNVYDHTSNNFDGIIALTTPTDSWVAKWQRLSRFTRGIYAISVSGTLPQ 95 The following BLAST results are available for this feature:
BLAST of CN186219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 18
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CN186219 ID=CN186219; Name=CN186219; organism=Citrus sinensis; type=EST; length=503bpback to top |