CN186219

Overview
NameCN186219
Unique NameCN186219
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length503
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9644 contig Csv1_Contig9644:306..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186219 vs. ExPASy Swiss-Prot
Match: SPT42_ARATH (Transcription elongation factor SPT4 homolog 2 OS=Arabidopsis thaliana GN=At5g63670 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 7.165e-43
Identity = 75/91 (82.42%), Postives = 87/91 (95.60%), Query Frame = -1
Query:  228 VKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVPPKR 500
            VKTYDQFR++GCENCPFFKM+EDHER+V+ TTPNFNGIISVMDP+RSWAARWLRIG+F PGCYTLAVSE LPE++Q+LC++ERVQYV PKR
Sbjct:   25 VKTYDQFRDAGCENCPFFKMEEDHERIVEVTTPNFNGIISVMDPSRSWAARWLRIGKFAPGCYTLAVSEPLPEEMQHLCQEERVQYVLPKR 115          
BLAST of CN186219 vs. ExPASy Swiss-Prot
Match: SPT41_ARATH (Transcription elongation factor SPT4 homolog 1 OS=Arabidopsis thaliana GN=At5g08565 PE=3 SV=3)

HSP 1 Score: 171.4 bits (433), Expect = 2.085e-42
Identity = 74/91 (81.32%), Postives = 85/91 (93.41%), Query Frame = -1
Query:  228 VKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVPPKR 500
            VKTYDQFR+SGCENCPFFK+++DHER+VD TTPNFNGIIS+MDP RSWAARWLRIG+F PGCYTLAVSEALPE++Q +C+  RVQYVPPKR
Sbjct:   25 VKTYDQFRDSGCENCPFFKIEDDHERIVDVTTPNFNGIISMMDPRRSWAARWLRIGKFAPGCYTLAVSEALPEEMQFICQQARVQYVPPKR 115          
BLAST of CN186219 vs. ExPASy Swiss-Prot
Match: SPT4_NEUCR (Transcription elongation factor spt-4 OS=Neurospora crassa GN=spt-4 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.274e-15
Identity = 35/89 (39.33%), Postives = 55/89 (61.80%), Query Frame = -1
Query:  237 VKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVP 500
            V TY +FR+ GC NC  F  +    +++  CT+  F GII++ +P +SW A+W R+  +V G Y   VS  LP+D++   ED+ +QY+P
Sbjct:   23 VMTYARFRDEGCPNCEDFLHLQGSPDQIDSCTSQVFEGIITIANPQKSWVAKWQRLDGYVKGVYATKVSGQLPDDVRTTLEDDGIQYIP 111          
BLAST of CN186219 vs. ExPASy Swiss-Prot
Match: SPT4_GIBZE (Transcription elongation factor SPT4 OS=Gibberella zeae GN=SPT4 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.408e-14
Identity = 34/88 (38.64%), Postives = 57/88 (64.77%), Query Frame = -1
Query:  237 TYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDE-RVQYVP 494
            T  +F+  GC NC  F  +    +++  CT+  F G+I++ +PT+SW A++ R+  +VPG Y + VS  LP+D+++  EDE R+QY+P
Sbjct:    2 TSQRFQNEGCPNCEEFLHLQHSPDQIESCTSQVFEGVITLANPTKSWIAKYQRLDSYVPGMYAIKVSGQLPDDVRSTLEDEYRIQYIP 89          
BLAST of CN186219 vs. ExPASy Swiss-Prot
Match: SPT4H_MACFA (Transcription elongation factor SPT4 OS=Macaca fascicularis GN=SUPT4H1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.408e-14
Identity = 35/87 (40.23%), Postives = 53/87 (60.92%), Query Frame = -1
Query:  243 VKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQY 500
            VKT DQF   GC+NC  + +M  + E V DCT+ +F+GII++M P  SW ++W R+  F PG Y ++V+  LP+ +    +   V Y
Sbjct:   22 VKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108          
BLAST of CN186219 vs. ExPASy Swiss-Prot
Match: SPT4H_HUMAN (Transcription elongation factor SPT4 OS=Homo sapiens GN=SUPT4H1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.408e-14
Identity = 35/87 (40.23%), Postives = 53/87 (60.92%), Query Frame = -1
Query:  243 VKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQY 500
            VKT DQF   GC+NC  + +M  + E V DCT+ +F+GII++M P  SW ++W R+  F PG Y ++V+  LP+ +    +   V Y
Sbjct:   22 VKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108          
BLAST of CN186219 vs. ExPASy Swiss-Prot
Match: SPT4H_BOVIN (Transcription elongation factor SPT4 OS=Bos taurus GN=SUPT4H1 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.408e-14
Identity = 35/87 (40.23%), Postives = 53/87 (60.92%), Query Frame = -1
Query:  243 VKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQY 500
            VKT DQF   GC+NC  + +M  + E V DCT+ +F+GII++M P  SW ++W R+  F PG Y ++V+  LP+ +    +   V Y
Sbjct:   22 VKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108          
BLAST of CN186219 vs. ExPASy Swiss-Prot
Match: SPT41_MOUSE (Transcription elongation factor SPT4 1 OS=Mus musculus GN=Supt4h1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.408e-14
Identity = 35/87 (40.23%), Postives = 53/87 (60.92%), Query Frame = -1
Query:  243 VKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQY 500
            VKT DQF   GC+NC  + +M  + E V DCT+ +F+GII++M P  SW ++W R+  F PG Y ++V+  LP+ +    +   V Y
Sbjct:   22 VKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108          
BLAST of CN186219 vs. ExPASy Swiss-Prot
Match: SPT4H_PONAB (Transcription elongation factor SPT4 OS=Pongo abelii GN=SUPT4H1 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.839e-14
Identity = 35/87 (40.23%), Postives = 53/87 (60.92%), Query Frame = -1
Query:  243 VKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQY 500
            VKT DQF   GC+NC  + +M  + E V DCT+ +F+GII++M P  SW ++W R+  F PG Y ++V+  LP+ +    +   V Y
Sbjct:   22 VKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPGDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108          
BLAST of CN186219 vs. ExPASy Swiss-Prot
Match: SPT4H_DROME (Transcription elongation factor SPT4 OS=Drosophila melanogaster GN=spt4 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.839e-14
Identity = 35/74 (47.30%), Postives = 49/74 (66.22%), Query Frame = -1
Query:  282 VKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPE 500
            VK++DQF   GCENC  F +M  + + V D T+ NF+GII++  PT SW A+W R+ RF  G Y ++VS  LP+
Sbjct:   22 VKSFDQFETDGCENCEEFLRMKNNKDNVYDHTSNNFDGIIALTTPTDSWVAKWQRLSRFTRGIYAISVSGTLPQ 95          
The following BLAST results are available for this feature:
BLAST of CN186219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
SPT42_ARATH7.165e-4382.42Transcription elongation factor SPT4 homolog 2 OS=... [more]
SPT41_ARATH2.085e-4281.32Transcription elongation factor SPT4 homolog 1 OS=... [more]
SPT4_NEUCR1.274e-1539.33Transcription elongation factor spt-4 OS=Neurospor... [more]
SPT4_GIBZE1.408e-1438.64Transcription elongation factor SPT4 OS=Gibberella... [more]
SPT4H_MACFA1.408e-1440.23Transcription elongation factor SPT4 OS=Macaca fas... [more]
SPT4H_HUMAN1.408e-1440.23Transcription elongation factor SPT4 OS=Homo sapie... [more]
SPT4H_BOVIN1.408e-1440.23Transcription elongation factor SPT4 OS=Bos taurus... [more]
SPT41_MOUSE1.408e-1440.23Transcription elongation factor SPT4 1 OS=Mus musc... [more]
SPT4H_PONAB1.839e-1440.23Transcription elongation factor SPT4 OS=Pongo abel... [more]
SPT4H_DROME1.839e-1447.30Transcription elongation factor SPT4 OS=Drosophila... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002I21_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186219 ID=CN186219; Name=CN186219; organism=Citrus sinensis; type=EST; length=503bp
TTTTTTTTTTTTTTTTTAACTCAAAAGTTTCTAGAACTCCCTCAAAAAAT
CAAAACGCAGCATACAAGTTACAAACATAAATAGGATTACTACACAAGCA
TTGGGCACAAGAAATTCAAGTCAACATTAGCAGCTACAGTTGCATATAAT
CGTTAAACATGTCATCTCCGAAGTAACCCGAAACAGATATAATCTTTACA
GACAATGCACTGCTCAAACTGTCATTAACGTTTTGGCGGCACATATTGCA
CGCGCTCGTCTTCGCATAAGTTCTGCAAGTCCTCAGGTAGGGCTTCTGAG
ACAGCAAGAGTATAACAACCAGGGACAAATCTTCCAATTCGCAACCAGCG
AGCAGCCCAGCTTCTAGTTGGATCCATGACTGATATAATGCCATTAAAAT
TAGGGGTAGTACAATCAACAACACGCTCGTGGTCTTCATCCATCTTGAAG
AAGGGACAGTTCTCGCATCCCGATTCTCTAAACTGATCATAGGTTTTGAC
CCT
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