CN186212

Overview
NameCN186212
Unique NameCN186212
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length775
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186212_ssr5 microsatellite CN186212_ssr5:5..24. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN186212 vs. ExPASy Swiss-Prot
Match: MAN4_SOLLC (Mannan endo-1,4-beta-mannosidase 4 OS=Solanum lycopersicum GN=MAN4 PE=1 SV=2)

HSP 1 Score: 273.478 bits (698), Expect = 9.170e-73
Identity = 126/207 (60.87%), Postives = 166/207 (80.19%), Query Frame = 2
Query:  152 IFLALLVIIYLNTYIYMAKANPNQEFAQTNGSHFAVNGKPLYLNGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPRYVEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTDPSG 772
            IF+A+L II+ N +    +A  N  F  T+G+HFA+NGK LY+NGFNAYW++Y A DPST+ KVT  FQQA+KY MN+ARTWAFS GG R LQ +PG YNE  F+ LDFV++EA++YG+++I+SLVNN+  +GG+ +YVEWA +RGQ L ++DDF+TN +VK +YKN+VK VLTR+N+IT VAYKDDPTI +WEL+NE RCP+D SG
Sbjct:    8 IFVAIL-IIFPNEFSKPTRAFSNNNFVYTDGTHFALNGKSLYINGFNAYWLMYIAYDPSTRIKVTNTFQQASKYKMNVARTWAFSHGGSRPLQSAPGVYNEQMFQGLDFVISEAKKYGIHLIMSLVNNWDAFGGKKQYVEWAVQRGQKLTSDDDFFTNPMVKGFYKNNVKVVLTRVNTITKVAYKDDPTILSWELINEPRCPSDLSG 213          
BLAST of CN186212 vs. ExPASy Swiss-Prot
Match: MAN7_ARATH (Mannan endo-1,4-beta-mannosidase 7 OS=Arabidopsis thaliana GN=MAN7 PE=2 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 3.485e-72
Identity = 119/207 (57.49%), Postives = 160/207 (77.29%), Query Frame = 2
Query:  152 IFLALLVIIYLNTYIYMAKANPNQEFAQTNGSHFAVNGKPLYLNGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPRYVEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTDPSG 772
            +F  L ++I L+ +     A P+  F +T G  F++NG P Y NGFNAYW++Y A DPS ++K++ AFQ A+++G+ +ARTWAFSDGGYRALQ SPGSYNED F+ LDF +AEAR +G+ +ILS  NN++ +GGR +YV+WAR RG+ + +EDDF+T+++VK +YKNH+KAVL R N+ T V YKDDPTI AWELMNE RCP+DPSG
Sbjct:    6 LFPFLAIVIQLSCWELGTDALPSGGFVRTKGVQFSLNGYPYYANGFNAYWLMYVASDPSQRSKISTAFQDASRHGLTVARTWAFSDGGYRALQYSPGSYNEDMFQGLDFALAEARRHGIKIILSFANNYESFGGRKQYVDWARSRGRPVSSEDDFFTDSLVKDFYKNHIKAVLNRFNTFTKVHYKDDPTIMAWELMNEPRCPSDPSG 212          
BLAST of CN186212 vs. ExPASy Swiss-Prot
Match: MAN4_ARATH (Putative mannan endo-1,4-beta-mannosidase 4 OS=Arabidopsis thaliana GN=MAN4 PE=3 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 3.159e-65
Identity = 113/207 (54.59%), Postives = 149/207 (71.98%), Query Frame = 2
Query:  155 FLALLVIIYLNTYIYMAKANPNQEFAQTNGSHFAVNGKPLYLNGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWAFSDGG-YRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPRYVEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTDPSG 772
            F+ LL I+   +Y+ + +A P+  F   NG  F +NGKP Y NGFNAYW+ Y A DP+T+ K+T  FQ AT  G+ IARTW F DG  YRALQ +PGSY+E TF+ LDFV+AEA+  G+ +I+ LVNN+ +YGG+ +YV+WAR +G+ + + DDFY N V+K +YKNHVK VL R+N+ T VAYKD+P I AW+LMNE RC  D SG
Sbjct:    6 FIVLLAIVIAQSYVGV-EAAPSDGFVSRNGVQFILNGKPFYANGFNAYWLAYEATDPTTRFKITNVFQNATSLGLTIARTWGFRDGAIYRALQTAPGSYDEQTFQGLDFVIAEAKRIGIKLIILLVNNWDDYGGKKQYVDWARSKGEVVSSNDDFYRNPVIKDFYKNHVKTVLNRVNTFTKVAYKDEPAIMAWQLMNEPRCGVDKSG 211          
BLAST of CN186212 vs. ExPASy Swiss-Prot
Match: MAN1_ORYSJ (Mannan endo-1,4-beta-mannosidase 1 OS=Oryza sativa subsp. japonica GN=MAN1 PE=2 SV=2)

HSP 1 Score: 246.514 bits (628), Expect = 1.200e-64
Identity = 115/210 (54.76%), Postives = 155/210 (73.81%), Query Frame = 2
Query:  146 SFIFLALLVIIYLNTYIYMAKANPNQEFAQTNGSHFAVNGKPLYLNGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWAFSDGGY-RALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPRYVEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTDPSG 772
            + + LA +V++ ++             F +  G+ F ++G P Y NGFNAYW++  A DPS + KV+AA  +A  +G+ +ARTWAFSDGG   ALQ+SPG+YNE+TFK LDFV++EAR+YG+ VILSLV+N+  +GGR +YV WAR +GQ + ++D+F+TN VVK +YKNHVK VLTR N+ITGVAY+DDPTI AWELMNE RC +D SG
Sbjct:   10 ALLVLACVVVVVIHGLGEAEALGGGGGFVRAQGTRFVLDGNPYYANGFNAYWLMLLAADPSQRGKVSAALGEAAGHGLTVARTWAFSDGGGGNALQLSPGNYNENTFKGLDFVLSEARKYGIKVILSLVDNYDSFGGRKQYVNWARAQGQGIGSDDEFFTNPVVKGFYKNHVKTVLTRKNTITGVAYRDDPTILAWELMNEPRCQSDLSG 219          
BLAST of CN186212 vs. ExPASy Swiss-Prot
Match: MAN9_ORYSJ (Putative mannan endo-1,4-beta-mannosidase 9 OS=Oryza sativa subsp. japonica GN=MAN9 PE=2 SV=2)

HSP 1 Score: 243.047 bits (619), Expect = 1.327e-63
Identity = 110/185 (59.46%), Postives = 141/185 (76.22%), Query Frame = 2
Query:  218 NQEFAQTNGSHFAVNGKPLYLNGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPRYVEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTDPSG 772
            N +FA+ +G+ F V G+P Y NGFNAYW++Y A DP  ++K     QQA      + RTWAFSDGGYR LQ SPG YNED F  LDFV+AEA++ G+Y+ILSLVNN+  +GG+ +YV+WAR++G +L ++DDF+ + V KQ+YKNH  AVLTR+N ITGVAYKDDPTIFAWEL+NE RC +D SG
Sbjct:   36 NGQFARASGTRFTVGGRPFYSNGFNAYWLMYMASDPGDRSKAAGVLQQAASLRATLVRTWAFSDGGYRPLQKSPGVYNEDMFMGLDFVIAEAKKRGLYLILSLVNNWDGFGGKKQYVQWARDQGHNLGSDDDFFRSDVTKQFYKNH--AVLTRVNKITGVAYKDDPTIFAWELINEPRCQSDLSG 218          
BLAST of CN186212 vs. ExPASy Swiss-Prot
Match: MAN4_ORYSJ (Mannan endo-1,4-beta-mannosidase 4 OS=Oryza sativa subsp. japonica GN=MAN4 PE=2 SV=2)

HSP 1 Score: 240.736 bits (613), Expect = 6.587e-63
Identity = 106/193 (54.92%), Postives = 144/193 (74.61%), Query Frame = 2
Query:  197 YMAKANPNQEFAQTNGSHFAVN-GKPLYLNGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPRYVEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTDPSG 772
            + A   P       +G+ F V+ G+ ++ +GFNAYW++  A DP+ +  V  AFQQA+ +G+N+ARTWAFSDGG + LQ SPG YNE  F+ LDFV+AEAR +G+Y++L L NNF  +GG+ +YV WA + G +L ++DDF+T+ +VK Y+KNHVK VLTR+N++TGVAYKDDPTIFAWELMNE RC  DP+G
Sbjct:   13 WRAAVAPGDGMVAVDGTQFVVDCGRTIFFSGFNAYWLMMMAADPALRGAVATAFQQASAHGLNLARTWAFSDGGDQPLQSSPGVYNETMFQGLDFVIAEARRHGIYLLLCLTNNFDNFGGKRQYVRWAGDAGHNLTSDDDFFTSTIVKSYFKNHVKTVLTRVNTLTGVAYKDDPTIFAWELMNEPRCYADPTG 205          
BLAST of CN186212 vs. ExPASy Swiss-Prot
Match: MAN3_ORYSJ (Mannan endo-1,4-beta-mannosidase 3 OS=Oryza sativa subsp. japonica GN=MAN3 PE=2 SV=2)

HSP 1 Score: 240.35 bits (612), Expect = 8.603e-63
Identity = 108/179 (60.34%), Postives = 141/179 (78.77%), Query Frame = 2
Query:  239 NGSHFAVNG-KPLYLNGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPRYVEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTDPSG 772
            +G+ F V G + +Y +GFNAYW++  A DP+ +A V AAF QA+  G+N+ARTWAFSDGG + LQ SPG Y+E  F+ LDFV+AEAR +G+Y++L L NNF ++GG+ +YV WA + G +L   DDF+T++VVK YYKNHVKAVLTR+N++TGVAYKDDPTIFAWELMNE RC  DP+G
Sbjct:   33 DGTQFVVEGGRTIYFSGFNAYWLMMMASDPARRAAVVAAFAQASSRGLNLARTWAFSDGGDQPLQSSPGVYDEAMFQGLDFVIAEARRHGIYLLLCLTNNFDDFGGKRQYVRWAADAGHNLTAGDDFFTSSVVKSYYKNHVKAVLTRVNTVTGVAYKDDPTIFAWELMNEPRCDADPTG 211          
BLAST of CN186212 vs. ExPASy Swiss-Prot
Match: MAN3_ARATH (Mannan endo-1,4-beta-mannosidase 3 OS=Arabidopsis thaliana GN=MAN3 PE=2 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 8.603e-63
Identity = 105/203 (51.72%), Postives = 144/203 (70.94%), Query Frame = 2
Query:  164 LLVIIYLNTYIYMAKANPNQEFAQTNGSHFAVNGKPLYLNGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPRYVEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTDPSG 772
            L ++I  N+     K+  +  F    G  F +NGKP Y NGFNAYW+ Y A D +T+ K+T  FQ AT + + I RTW F DGGYRALQ++PG Y+E TF+ LDF +AEA+  G+ +I++ VNN+ ++GGR +YV+WA+  GQ++ ++DDFYTN +VKQYYKNHVK ++ R+N+ T V YKD+PTI  WELMNE +C  DPSG
Sbjct:   10 LAILIAQNSSDLGVKSASSDGFVSRKGVQFILNGKPFYANGFNAYWLAYEATDSTTRFKITYVFQNATIHDLTIVRTWGFRDGGYRALQIAPGVYDEKTFQGLDFAIAEAKRLGIKMIITFVNNYSDFGGRKQYVDWAKNTGQNVSSDDDFYTNPLVKQYYKNHVKTMVNRVNTFTKVEYKDEPTIMGWELMNEPQCRADPSG 212          
BLAST of CN186212 vs. ExPASy Swiss-Prot
Match: MAN6_ARATH (Mannan endo-1,4-beta-mannosidase 6 OS=Arabidopsis thaliana GN=MAN6 PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 9.512e-62
Identity = 103/183 (56.28%), Postives = 138/183 (75.41%), Query Frame = 2
Query:  224 EFAQTNGSHFAVNGKPLYLNGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPRYVEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTDPSG 772
            E  Q  G  F +NG+P Y+NGFN YWM+  A D ST+ KVT  FQQA+  GM + RTWAF+DG +RALQ SP  Y+E+ FKALDFV++EAR+Y + +ILSLVNN+  YGG+ +YV+W    G +L ++DDF+TN  ++ +Y++HV+ VL R+N+ T + YK+DPTIFAWELMNE RCP+DPSG
Sbjct:   46 EMVQRKGMQFTLNGQPFYVNGFNTYWMMTLAADNSTRGKVTEVFQQASAVGMTVGRTWAFNDGQWRALQKSPSVYDEEVFKALDFVLSEARKYKIRLILSLVNNWDAYGGKAQYVKWGNASGLNLTSDDDFFTNPTLRNFYQSHVRTVLNRVNTFTNITYKNDPTIFAWELMNEPRCPSDPSG 228          
BLAST of CN186212 vs. ExPASy Swiss-Prot
Match: MAN5_SOLLC (Mannan endo-1,4-beta-mannosidase 5 OS=Solanum lycopersicum GN=MAN5 PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.242e-61
Identity = 104/209 (49.76%), Postives = 147/209 (70.33%), Query Frame = 2
Query:  149 FIFLALLVIIYLNTYIYMAKANPN-QEFAQTNGSHFAVNGKPLYLNGFNAYWMLYYAGDPSTKAKVTAAFQQATKYGMNIARTWAFSDGGYRALQVSPGSYNEDTFKALDFVVAEAREYGVYVILSLVNNFKEYGGRPRYVEWARERGQSLKNEDDFYTNAVVKQYYKNHVKAVLTRINSITGVAYKDDPTIFAWELMNEARCPTDPSG 772
            F+   L +       + + + N N Q F + NG+HF +NG P   NGFN+YW+++ A +PS + KV+   ++A+  G+++ RTWAFSDGG RALQ+SPG Y+E  F+ LDFV++EA++YG+ +ILS VNN+ ++GG+ +YV+WAR  G  +  +DDFYTN + K YYKNH+K V+TR N+ITG+ YKDD TI AWELMNE R   D SG
Sbjct:   12 FVLFLLSLAFACEARVLLDENNANDQGFVRVNGAHFELNGSPFLFNGFNSYWLMHVAAEPSERYKVSEVLREASSAGLSVCRTWAFSDGGDRALQISPGVYDERVFQGLDFVISEAKKYGIRLILSFVNNYNDFGGKAQYVQWARNAGAQINGDDDFYTNYITKNYYKNHIKKVVTRFNTITGMTYKDDSTIMAWELMNEPRNQADYSG 220          
The following BLAST results are available for this feature:
BLAST of CN186212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
MAN4_SOLLC9.170e-7360.87Mannan endo-1,4-beta-mannosidase 4 OS=Solanum lyco... [more]
MAN7_ARATH3.485e-7257.49Mannan endo-1,4-beta-mannosidase 7 OS=Arabidopsis ... [more]
MAN4_ARATH3.159e-6554.59Putative mannan endo-1,4-beta-mannosidase 4 OS=Ara... [more]
MAN1_ORYSJ1.200e-6454.76Mannan endo-1,4-beta-mannosidase 1 OS=Oryza sativa... [more]
MAN9_ORYSJ1.327e-6359.46Putative mannan endo-1,4-beta-mannosidase 9 OS=Ory... [more]
MAN4_ORYSJ6.587e-6354.92Mannan endo-1,4-beta-mannosidase 4 OS=Oryza sativa... [more]
MAN3_ORYSJ8.603e-6360.34Mannan endo-1,4-beta-mannosidase 3 OS=Oryza sativa... [more]
MAN3_ARATH8.603e-6351.72Mannan endo-1,4-beta-mannosidase 3 OS=Arabidopsis ... [more]
MAN6_ARATH9.512e-6256.28Mannan endo-1,4-beta-mannosidase 6 OS=Arabidopsis ... [more]
MAN5_SOLLC1.242e-6149.76Mannan endo-1,4-beta-mannosidase 5 OS=Solanum lyco... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002I16_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002I16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186212 ID=CN186212; Name=CN186212; organism=Citrus sinensis; type=EST; length=775bp
GCGGTCTCTCTCTCTCTCTCTCTCACATGAAGAACCACCATTCAACTTTA
TAACGTCATGTGTGTATAATTATTGCTGAAACTTTCTCGGCTATAATTAA
GTTTATGCTAGCTAGCCAGCCATGTTAGTCACAAGATTGTTCAACAGTTT
CATCTTTTTGGCTCTACTAGTAATCATATATCTGAATACTTACATCTACA
TGGCTAAAGCCAACCCTAATCAAGAATTTGCACAAACAAATGGGAGCCAT
TTTGCTGTAAATGGGAAGCCTCTCTACTTAAATGGTTTCAATGCGTACTG
GATGTTGTATTATGCAGGTGACCCATCAACGAAGGCGAAGGTGACAGCCG
CATTTCAACAAGCCACCAAATATGGCATGAATATCGCTAGAACTTGGGCT
TTTAGCGACGGCGGTTACAGAGCCCTTCAGGTTTCTCCTGGTTCATACAA
CGAGGACACGTTCAAGGCACTGGACTTTGTGGTGGCAGAAGCAAGGGAAT
ACGGGGTTTATGTGATCCTAAGCTTAGTGAATAACTTCAAGGAGTATGGG
GGAAGGCCACGTTATGTTGAATGGGCGAGAGAGCGTGGCCAGTCTTTGAA
GAATGAGGATGACTTCTATACAAATGCTGTTGTCAAACAATACTACAAGA
ATCATGTTAAGGCAGTGCTGACGAGAATCAACTCGATAACCGGCGTGGCA
TACAAGGATGATCCCACCATTTTTGCATGGGAACTCATGAACGAAGCTCG
CTGCCCAACCGATCCCTCTGGGACA
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