CN186203

Overview
NameCN186203
Unique NameCN186203
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length782
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186203_ssr674 microsatellite CN186203_ssr674:674..685. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2529 contig Csv1_Contig2529:1..782. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186203 vs. ExPASy Swiss-Prot
Match: MBF1B_ARATH (Multiprotein-bridging factor 1b OS=Arabidopsis thaliana GN=MBF1B PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.538e-62
Identity = 119/139 (85.61%), Postives = 132/139 (94.96%), Query Frame = -2
Query:  200 MAGIGPITQDWEPVVIKKKAPNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 616
            MAGIGPITQDWEPVVI+K+APNAA K+DEK VNAARR+GADIETVRK +AG+NKAASS TSLNT+KLD+DTENL+HDRVP+ELKKAI+QAR +KKLTQSQLA LINEKPQVIQEYESGKAIPNQQIL+KLERALG KLR
Sbjct:    1 MAGIGPITQDWEPVVIRKRAPNAAAKRDEKTVNAARRSGADIETVRKFNAGSNKAASSGTSLNTKKLDDDTENLSHDRVPTELKKAIMQARGEKKLTQSQLAHLINEKPQVIQEYESGKAIPNQQILSKLERALGAKLR 139          
BLAST of CN186203 vs. ExPASy Swiss-Prot
Match: MBF1A_ARATH (Multiprotein-bridging factor 1a OS=Arabidopsis thaliana GN=MBF1A PE=2 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 3.665e-61
Identity = 118/139 (84.89%), Postives = 129/139 (92.81%), Query Frame = -2
Query:  200 MAGIGPITQDWEPVVIKKKAPNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 616
            MAGIGPITQDWEPVVI+KK  NAA K+DEK VNAARR+GADIETVRK +AGTNKAASS TSLNT+ LD+DTENL H+RVP+ELKKAI+QAR DKKLTQSQLAQ+INEKPQVIQEYESGKAIPNQQIL+KLERALG KLR
Sbjct:    1 MAGIGPITQDWEPVVIRKKPANAAAKRDEKTVNAARRSGADIETVRKFNAGTNKAASSGTSLNTKMLDDDTENLTHERVPTELKKAIMQARTDKKLTQSQLAQIINEKPQVIQEYESGKAIPNQQILSKLERALGAKLR 139          
BLAST of CN186203 vs. ExPASy Swiss-Prot
Match: MBF1C_ARATH (Multiprotein-bridging factor 1c OS=Arabidopsis thaliana GN=MBF1C PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.203e-33
Identity = 70/137 (51.09%), Postives = 99/137 (72.26%), Query Frame = -2
Query:  200 GPITQDWEPVVIKKKAPNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTS--LNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 604
            G +TQDWEPVV+ K    +   +D K VNAA R G  ++TV+K  AG+NK   S+    +NT+KL+E+TE  A DRV +E++  I +AR +KK++Q+ LA+ INE+ QV+QEYE+GKA+PNQ +L K+E+ LGVKLR
Sbjct:    7 GAVTQDWEPVVLHKSKQKSQDLRDPKAVNAALRNGVAVQTVKKFDAGSNKKGKSTAVPVINTKKLEEETEPAAMDRVKAEVRLMIQKARLEKKMSQADLAKQINERTQVVQEYENGKAVPNQAVLAKMEKVLGVKLR 143          
BLAST of CN186203 vs. ExPASy Swiss-Prot
Match: EDF1_HUMAN (Endothelial differentiation-related factor 1 OS=Homo sapiens GN=EDF1 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.741e-31
Identity = 74/141 (52.48%), Postives = 92/141 (65.25%), Query Frame = -2
Query:  170 DWEPV-VIKKKAPNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLRXXXXXXGINK 589
            DW+ V V++KK P AA  K ++ + AA+R G D+ET +K  AG NK    S + NT KLD +TE L HDRV  E+ K I Q R  K LTQ  LA  INEKPQVI +YESG+AIPN Q+L K+ERA+G+KLR       I K
Sbjct:    5 DWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNK--QHSITKNTAKLDRETEELHHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRGKDIGKPIEK 143          
BLAST of CN186203 vs. ExPASy Swiss-Prot
Match: EDF1_BOVIN (Endothelial differentiation-related factor 1 OS=Bos taurus GN=EDF1 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.741e-31
Identity = 74/141 (52.48%), Postives = 92/141 (65.25%), Query Frame = -2
Query:  170 DWEPV-VIKKKAPNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLRXXXXXXGINK 589
            DW+ V V++KK P AA  K ++ + AA+R G D+ET +K  AG NK    S + NT KLD +TE L HDRV  E+ K I Q R  K LTQ  LA  INEKPQVI +YESG+AIPN Q+L K+ERA+G+KLR       I K
Sbjct:    5 DWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNK--QHSITKNTAKLDRETEELHHDRVTLEVGKVIQQGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRGKDIGKPIEK 143          
BLAST of CN186203 vs. ExPASy Swiss-Prot
Match: EDF1_CHICK (Endothelial differentiation-related factor 1 homolog OS=Gallus gallus GN=EDF1 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.150e-30
Identity = 71/131 (54.20%), Postives = 91/131 (69.47%), Query Frame = -2
Query:  200 DWEPV-VIKKKAPNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 589
            DW+ V V++KK P+AA  K ++ V AA+R G D+ET +K  AG NK      + NT KLD +TE L HDRVP E+ K I Q R  K +TQ  LA  INEKPQVI +YESG+AIPN Q++ K+ERA+G+KLR
Sbjct:    5 DWDTVTVLRKKGPSAAQAKSKQAVLAAQRRGEDVETSKKWAAGQNK--QHFITKNTAKLDRETEELHHDRVPLEVGKVIQQGRQSKGMTQKDLATKINEKPQVIADYESGRAIPNNQVMGKIERAIGLKLR 133          
BLAST of CN186203 vs. ExPASy Swiss-Prot
Match: EDF1_RAT (Endothelial differentiation-related factor 1 OS=Rattus norvegicus GN=Edf1 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.961e-30
Identity = 73/141 (51.77%), Postives = 92/141 (65.25%), Query Frame = -2
Query:  170 DWEPV-VIKKKAPNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLRXXXXXXGINK 589
            DW+ V V++KK P AA  K ++ + AA+R G D+ET +K  AG NK    S + NT KLD +TE L HDRV  E+ K I + R  K LTQ  LA  INEKPQVI +YESG+AIPN Q+L K+ERA+G+KLR       I K
Sbjct:    5 DWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNK--QHSITKNTAKLDRETEELHHDRVTLEVGKVIQRGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRGKDIGKPIEK 143          
BLAST of CN186203 vs. ExPASy Swiss-Prot
Match: EDF1_MOUSE (Endothelial differentiation-related factor 1 OS=Mus musculus GN=Edf1 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.961e-30
Identity = 73/141 (51.77%), Postives = 92/141 (65.25%), Query Frame = -2
Query:  170 DWEPV-VIKKKAPNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLRXXXXXXGINK 589
            DW+ V V++KK P AA  K ++ + AA+R G D+ET +K  AG NK    S + NT KLD +TE L HDRV  E+ K I + R  K LTQ  LA  INEKPQVI +YESG+AIPN Q+L K+ERA+G+KLR       I K
Sbjct:    5 DWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNK--QHSITKNTAKLDRETEELHHDRVTLEVGKVIQRGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRGKDIGKPIEK 143          
BLAST of CN186203 vs. ExPASy Swiss-Prot
Match: EDF1_XENLA (Endothelial differentiation-related factor 1 homolog OS=Xenopus laevis GN=edf1 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 5.707e-30
Identity = 68/131 (51.91%), Postives = 89/131 (67.94%), Query Frame = -2
Query:  200 DWEPV-VIKKKAPNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 589
            DW+ V V++KK P AA  K ++ + AA+R G ++ET +K  AG NK    + + NT KLD +TE L HDRVP E+ K I Q R  K +TQ  LA  INEKPQVI +YE GKAIPN Q++ K+ER +G+KLR
Sbjct:    5 DWDTVTVLRKKGPTAAQAKSKQAITAAQRRGEEVETSKKWSAGQNK--QHTITRNTAKLDRETEELHHDRVPLEVGKVIQQGRQGKGMTQKDLATKINEKPQVIADYECGKAIPNNQVMGKIERVIGLKLR 133          
BLAST of CN186203 vs. ExPASy Swiss-Prot
Match: EDF1_DANRE (Endothelial differentiation-related factor 1 homolog OS=Danio rerio GN=edf1 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.169e-29
Identity = 67/130 (51.54%), Postives = 87/130 (66.92%), Query Frame = -2
Query:  200 DWEPVVIKKKAPNAATKKDEKVVNAARRAGADIETVRKSHAGTNKAASSSTSLNTRKLDEDTENLAHDRVPSELKKAIVQARNDKKLTQSQLAQLINEKPQVIQEYESGKAIPNQQILTKLERALGVKLR 589
            DW+ V + +K  +AA  K ++ V AA+R G  +ET +K  AG NK      + NT KLD +TE L+H RVP E+ K I Q R +K LTQ  LA  INEKPQ+I EYE GKAIPN Q++ K+ERA+G+KLR
Sbjct:    5 DWDTVTVLRKKGSAAQSKSKQAVTAAQRKGEAVETSKKWAAGQNK--QHVVTKNTAKLDRETEELSHQRVPLEVGKVIQQGRQNKGLTQKDLATKINEKPQIIAEYECGKAIPNNQVMGKIERAIGLKLR 132          
The following BLAST results are available for this feature:
BLAST of CN186203 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
MBF1B_ARATH2.538e-6285.61Multiprotein-bridging factor 1b OS=Arabidopsis tha... [more]
MBF1A_ARATH3.665e-6184.89Multiprotein-bridging factor 1a OS=Arabidopsis tha... [more]
MBF1C_ARATH7.203e-3351.09Multiprotein-bridging factor 1c OS=Arabidopsis tha... [more]
EDF1_HUMAN6.741e-3152.48Endothelial differentiation-related factor 1 OS=Ho... [more]
EDF1_BOVIN6.741e-3152.48Endothelial differentiation-related factor 1 OS=Bo... [more]
EDF1_CHICK1.150e-3054.20Endothelial differentiation-related factor 1 homol... [more]
EDF1_RAT1.961e-3051.77Endothelial differentiation-related factor 1 OS=Ra... [more]
EDF1_MOUSE1.961e-3051.77Endothelial differentiation-related factor 1 OS=Mu... [more]
EDF1_XENLA5.707e-3051.91Endothelial differentiation-related factor 1 homol... [more]
EDF1_DANRE2.169e-2951.54Endothelial differentiation-related factor 1 homol... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002I12_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002I12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186203 ID=CN186203; Name=CN186203; organism=Citrus sinensis; type=EST; length=782bp
TTTTTTTTTGAGAAAGATAAAAGGCTTAATAGATTCACAGTCATGACAAG
AGCAATAGTCAAGGACACTAGTTATGTGCCGAGCCATAACCATACGAGAA
AACATTCATATACAGCACCCATTTTGAAGACTCAACAACAGGACACAACA
TCAAGTCCTGGTAGCAGTTTTTATTTATCCCTCCTCCTCACTTCTTTCCT
CGAAGCTTCACACCAAGGGCCCTCTCCAGCTTGGTAAGTATCTGCTGATT
TGGAATGGCTTTTCCTGATTCATATTCCTGAATCACCTGGGGCTTCTCAT
TGATCAACTGAGCAAGTTGAGACTGGGTAAGTTTCTTATCATTTCGTGCC
TGAACAATGGCTTTCTTGAGTTCACTAGGCACTCGATCATGAGCAAGGTT
CTCTGTATCTTCATCAAGCTTCCTGGTGTTCAGAGAAGTGCTACTCGAGG
CAGCCTTGTTTGTGCCAGCATGTGATTTTCTGACAGTCTCGATATCGGCA
CCGGCGCGGCGGGCAGCGTTAACGACCTTCTCGTCCTTCTTGGTGGCGGC
GTTAGGGGCTTTCTTCTTAATCACCACCGGCTCCCAGTCCTGTGTGATCG
GTCCGATTCCGGCCATGTCCACTCCTCGATCAAATCCGATTTATCGGCCT
CCTCGCCGGAACCTTACGAAAAAATATATATATATTATTCTTCCGATTTT
ATCCCACTATCCCTCTCTCTTCCTCTCTAAATCTGTCATTCTCTTTGCCC
TGTTTTTTTAACTCAATAATAATCTCTAGCAA
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