CN186190

Overview
NameCN186190
Unique NameCN186190
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length673
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12845 contig Csv1_Contig12845:346..1018. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186190 vs. ExPASy Swiss-Prot
Match: R3HD2_MOUSE (R3H domain-containing protein 2 OS=Mus musculus GN=R3hdm2 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 8.347e-13
Identity = 63/223 (28.25%), Postives = 106/223 (47.53%), Query Frame = 1
Query:   19 FLVEALQ-NPRHRLTILRMELDIQRFLQNPDQQHFEFQHFP--TSYLRLAAHRVSQHYGLVTMVQETGIEGLGNRILVRKTAESKYPAVRLSEIPAKQSEESDKLEKIKIAIRRRPNAGCVNGANETGTKRSPVR---SVEERKEEYDRARARIFSGPSSPNSEDTLTQVSTDMKNIGFNRDEREIVRNSITDAEKIISIRDGAGLSRVAIFRDREKDRTDPD 669
            FLV  L+ NPR R+ +L++E +I  F+ + + Q   F+ FP  TSY R+  HRV+ ++G+   V +TG       +++ KT+ ++ P  R SE      ++    E  +  I +R +A      N+        R   S+EER+EEY R R RIF+  +  N      ++S +  +   ++  R+I R +     +  S R  +  S +     R    TD D
Sbjct:  157 FLVNTLKKNPRDRMMLLKLEQEILDFINDNNNQ---FKKFPQMTSYHRMLLHRVAAYFGMDHNVDQTG-----KAVIINKTSSTRIPEQRFSE----HIKDEKNTEFQQRFILKRDDASMDRDDNQMRVPLQDGRRSKSIEEREEEYQRVRERIFARETGQNGYLNDIRLSKEAFSSSSHK-RRQIFRGNREGLSRTSSSRQSSTDSELKSLEPRPWSSTDSD 366          
BLAST of CN186190 vs. ExPASy Swiss-Prot
Match: R3HD1_HUMAN (R3H domain-containing protein 1 OS=Homo sapiens GN=R3HDM1 PE=1 SV=3)

HSP 1 Score: 72.7886 bits (177), Expect = 1.860e-12
Identity = 57/187 (30.48%), Postives = 94/187 (50.27%), Query Frame = 1
Query:   19 FLVEALQN-PRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVTMVQETGIEGLGNRILVRKTAESKYPAVRLSEIPAKQSEESDKLEKI-KIAIRRRPNAGCVNGANETGTKRSPVR---SVEERKEEYDRARARIFSGPSSPNSEDTLTQVSTDMKNIGFNRDEREIVR 564
            FLV  L+N PR R+ +L++E +I  F+ N +    +F    TSY R+  HRV+ ++GL     +  ++  G  ++V KT+ ++ P  + +E       + DK E   K  I +R N+      N+   +    R   S+EER+EEY RAR RIFS  S  + E+ +       ++    +  R+I R
Sbjct:  156 FLVNTLKNNPRDRMMLLKLEQEILDFIGNNESPRKKFPPM-TSYHRMLLHRVAAYFGL-----DHNVDQSGKSVIVNKTSNTRIPDQKFNE-----HIKDDKGEDFQKRYILKRDNSSFDKDDNQMRIRLKDDRRSKSIEEREEEYQRARDRIFSQDSLCSQENYIIDKRLQDEDASSTQQRRQIFR 331          
BLAST of CN186190 vs. ExPASy Swiss-Prot
Match: R3HD2_BOVIN (R3H domain-containing protein 2 OS=Bos taurus GN=R3HDM2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.066e-12
Identity = 52/162 (32.10%), Postives = 84/162 (51.85%), Query Frame = 1
Query:   19 FLVEALQ-NPRHRLTILRMELDIQRFLQNPDQQHFEFQHFP--TSYLRLAAHRVSQHYGLVTMVQETGIEGLGNRILVRKTAESKYPAVRLSEIPAKQSEESDKLEKIKIAIRRRPNAGCVNGANETGTKRSPVR---SVEERKEEYDRARARIFSGPSSPN 486
            FLV  L+ NPR R+ +L++E +I  F+ + + Q   F+ FP  TSY R+  HRV+ ++G+   V +TG       +++ KT+ ++ P  R SE      ++    E  +  I +R +A      N+        R   S+EER+EEY R R RIF+  +  N
Sbjct:  157 FLVNTLKKNPRDRMMLLKLEQEILDFINDNNNQ---FKKFPQMTSYHRMLLHRVAAYFGMDHNVDQTG-----KAVIINKTSNTRIPEQRFSE----HIKDEKNTEFQQRFILKRDDASMDRDDNQIRVPLQDGRRSKSIEEREEEYQRVRERIFARETGQN 306          
BLAST of CN186190 vs. ExPASy Swiss-Prot
Match: ARP21_MOUSE (cAMP-regulated phosphoprotein 21 OS=Mus musculus GN=Arpp21 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 9.229e-12
Identity = 55/190 (28.95%), Postives = 101/190 (53.16%), Query Frame = 1
Query:   19 FLVEALQN-PRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVTMVQETGIEGLGNRILVRKTAESKYPAVRLSE-IPAKQSEESDK---LEKIKIAIRRRPNAGCVNGANETGTKRSPVRSVEERKEEYDRARARIFSGPSSPNSEDTL---TQVSTDMKNIGFNRDEREIVR 564
            FL+  L+N  R R+ +L+ME ++  F+ + +  + +F    +SY R+  HRV+ ++GL   V +TG       +++ KT+ ++ P  R  E +  ++SEES K   L++   +I +  N   ++   +   +RS  +S+EER+EEY R R RIF+  S  + E      +++  DM        +R++ R
Sbjct:  151 FLINTLKNNSRDRMILLKMEQEMIDFIADSNNHYKKFPQM-SSYQRMLVHRVAAYFGLDHNVDQTG-----KSVIINKTSSTRIPEQRFCEHLKDEKSEESQKRFILKRDNSSIDKEDNQNRMHPFRDD--RRS--KSIEEREEEYQRVRERIFAHDSVCSQESLFLDNSRLQEDMHICNETYKKRQLFR 330          
BLAST of CN186190 vs. ExPASy Swiss-Prot
Match: ARP21_HUMAN (cAMP-regulated phosphoprotein 21 OS=Homo sapiens GN=ARPP21 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.507e-11
Identity = 53/173 (30.64%), Postives = 88/173 (50.87%), Query Frame = 1
Query:   19 FLVEALQN-PRHRLTILRMELDIQRFLQNPDQQHFEFQHFPTSYLRLAAHRVSQHYGLVTMVQETGIEGLGNRILVRKTAESKYPAVRLSE-IPAKQSEESDKLEKIKIAIRRRPNAGCVNGANETGTKRSPVR------SVEERKEEYDRARARIFSGPSSPNSEDTLTQVS 513
            FL+  L+N  R R+ +L+ME +I  F+ + +  + +F    +SY R+  HRV+ ++GL   V +TG       +++ KT+ ++ P  R  E +  ++ EES K       I +R N+      N+   +  P R      S+EER+EEY R R RIF+  S  + E    + S
Sbjct:  152 FLINTLKNNSRDRMILLKMEQEIIDFIADNNNHYKKFPQM-SSYQRMLVHRVAAYFGLDHNVDQTG-----KSVIINKTSSTRIPEQRFCEHLKDEKGEESQKR-----FILKRDNSSIDKEDNQQN-RMHPFRDDRRSKSIEEREEEYQRVRERIFAHDSVCSQESLFVENS 312          
The following BLAST results are available for this feature:
BLAST of CN186190 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
R3HD2_MOUSE8.347e-1328.25R3H domain-containing protein 2 OS=Mus musculus GN... [more]
R3HD1_HUMAN1.860e-1230.48R3H domain-containing protein 1 OS=Homo sapiens GN... [more]
R3HD2_BOVIN7.066e-1232.10R3H domain-containing protein 2 OS=Bos taurus GN=R... [more]
ARP21_MOUSE9.229e-1228.95cAMP-regulated phosphoprotein 21 OS=Mus musculus G... [more]
ARP21_HUMAN3.507e-1130.64cAMP-regulated phosphoprotein 21 OS=Homo sapiens G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0002I04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002I04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186190 ID=CN186190; Name=CN186190; organism=Citrus sinensis; type=EST; length=673bp
GCGGTAATGGTGGATCCATTTTTGGTTGAGGCTCTCCAGAATCCTCGTCA
TCGTCTCACCATTCTGCGTATGGAACTTGATATTCAGAGGTTTTTGCAAA
ATCCTGATCAGCAGCATTTCGAGTTCCAACATTTTCCTACTTCTTATCTC
CGACTGGCTGCACACCGTGTTTCTCAACATTATGGGCTAGTAACTATGGT
TCAGGAAACTGGCATAGAAGGGCTGGGTAACAGGATTTTGGTGAGGAAAA
CAGCAGAAAGCAAATATCCTGCTGTCCGTTTATCTGAGATTCCTGCTAAG
CAGTCGGAAGAAAGTGATAAGCTTGAAAAGATTAAAATTGCCATCAGGCG
TAGGCCCAATGCTGGATGTGTTAATGGAGCAAATGAAACTGGGACGAAAC
GAAGTCCTGTTAGAAGTGTGGAAGAGAGGAAGGAGGAGTATGATCGAGCA
CGTGCCCGCATCTTTAGTGGTCCTAGCAGTCCTAACTCAGAGGATACGCT
TACTCAGGTCTCTACAGATATGAAAAATATTGGCTTTAACCGAGATGAGA
GGGAAATTGTCAGGAACTCCATTACTGATGCAGAAAAGATTATTAGTATC
AGAGACGGTGCTGGTTTGTCTCGAGTTGCCATTTTCAGAGACAGGGAGAA
GGATCGTACTGATCCAGATTATG
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