CX046757

Overview
NameCX046757
Unique NameCX046757
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length467
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX046757_ssr383 microsatellite CX046757_ssr383:383..392. BLAST: Citrus ESTs to Prunus persica proteins V1
CX046757_ssr393 microsatellite CX046757_ssr393:393..414. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX046757 vs. ExPASy Swiss-Prot
Match: PIMT_ARATH (Protein-L-isoaspartate O-methyltransferase OS=Arabidopsis thaliana GN=PCM PE=2 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 3.803e-34
Identity = 69/78 (88.46%), Postives = 74/78 (94.87%), Query Frame = 3
Query:    3 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRG 236
            GW EFAPYDAIHVGAAAPEIP+ALIDQLKPGGR+VIPVGNIFQDL+VVDKN DGS+SI  ETSVRYVPLTSR+AQLRG
Sbjct:  152 GWAEFAPYDAIHVGAAAPEIPEALIDQLKPGGRLVIPVGNIFQDLQVVDKNSDGSVSIKDETSVRYVPLTSREAQLRG 229          
BLAST of CX046757 vs. ExPASy Swiss-Prot
Match: PIMT_WHEAT (Protein-L-isoaspartate O-methyltransferase OS=Triticum aestivum GN=PCM PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.447e-27
Identity = 56/77 (72.73%), Postives = 67/77 (87.01%), Query Frame = 3
Query:    3 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNIFQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLR 233
            GWP+ APYDAIHVGAAAPEIP+ L++QLKPGGRMVIPVG   QDL+V+DK+ DGS S+ ++ SVRYVPLTSR AQL+
Sbjct:  152 GWPDAAPYDAIHVGAAAPEIPRPLLEQLKPGGRMVIPVGTYSQDLQVIDKSADGSTSVRNDASVRYVPLTSRSAQLQ 228          
BLAST of CX046757 vs. ExPASy Swiss-Prot
Match: PIMT_HUMAN (Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Homo sapiens GN=PCMT1 PE=1 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 4.990e-18
Identity = 47/81 (58.02%), Postives = 57/81 (70.37%), Query Frame = 3
Query:    3 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNI--FQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 239
            G+ E APYDAIHVGAAAP +PQALIDQLKPGGR+++PVG     Q L+  DK QDGS+ +     V YVPLT ++ Q   W
Sbjct:  146 GYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSIKMKPLMGVIYVPLTDKEKQWSRW 226          
BLAST of CX046757 vs. ExPASy Swiss-Prot
Match: PIMT_PONAB (Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Pongo abelii GN=PCMT1 PE=2 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 6.517e-18
Identity = 47/81 (58.02%), Postives = 57/81 (70.37%), Query Frame = 3
Query:    3 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNI--FQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 239
            G+ E APYDAIHVGAAAP +PQALIDQLKPGGR+++PVG     Q L+  DK QDGS+ +     V YVPLT ++ Q   W
Sbjct:  146 GYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSRW 226          
BLAST of CX046757 vs. ExPASy Swiss-Prot
Match: PIMT_PIG (Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Sus scrofa GN=PCMT1 PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 6.517e-18
Identity = 47/81 (58.02%), Postives = 57/81 (70.37%), Query Frame = 3
Query:    3 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNI--FQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 239
            G+ E APYDAIHVGAAAP +PQALIDQLKPGGR+++PVG     Q L+  DK QDGS+ +     V YVPLT ++ Q   W
Sbjct:  146 GYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSRW 226          
BLAST of CX046757 vs. ExPASy Swiss-Prot
Match: PIMT_MOUSE (Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Mus musculus GN=Pcmt1 PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 6.517e-18
Identity = 47/81 (58.02%), Postives = 57/81 (70.37%), Query Frame = 3
Query:    3 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNI--FQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 239
            G+ E APYDAIHVGAAAP +PQALIDQLKPGGR+++PVG     Q L+  DK QDGS+ +     V YVPLT ++ Q   W
Sbjct:  146 GYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSRW 226          
BLAST of CX046757 vs. ExPASy Swiss-Prot
Match: PIMT_MACFA (Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Macaca fascicularis GN=PCMT1 PE=2 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 6.517e-18
Identity = 47/81 (58.02%), Postives = 57/81 (70.37%), Query Frame = 3
Query:    3 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNI--FQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 239
            G+ E APYDAIHVGAAAP +PQALIDQLKPGGR+++PVG     Q L+  DK QDGS+ +     V YVPLT ++ Q   W
Sbjct:  146 GYAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSRW 226          
BLAST of CX046757 vs. ExPASy Swiss-Prot
Match: PIMT_RAT (Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Rattus norvegicus GN=Pcmt1 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 8.511e-18
Identity = 47/81 (58.02%), Postives = 57/81 (70.37%), Query Frame = 3
Query:    3 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNI--FQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 239
            G+ E APYDAIHVGAAAP +PQALIDQLKPGGR+++PVG     Q L+  DK QDGS+ +     V YVPLT ++ Q   W
Sbjct:  146 GFAEEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSRW 226          
BLAST of CX046757 vs. ExPASy Swiss-Prot
Match: PIMT_BOVIN (Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Bos taurus GN=PCMT1 PE=1 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 3.234e-17
Identity = 46/81 (56.79%), Postives = 56/81 (69.14%), Query Frame = 3
Query:    3 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNI--FQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQLRGW 239
            G+   APYDAIHVGAAAP +PQALIDQLKPGGR+++PVG     Q L+  DK QDGS+ +     V YVPLT ++ Q   W
Sbjct:  146 GYAAEAPYDAIHVGAAAPVVPQALIDQLKPGGRLILPVGPAGGNQMLEQYDKLQDGSVKMKPLMGVIYVPLTDKEKQWSRW 226          
BLAST of CX046757 vs. ExPASy Swiss-Prot
Match: PIMT_DANRE (Protein-L-isoaspartate(D-aspartate) O-methyltransferase OS=Danio rerio GN=pcmt PE=2 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 7.205e-17
Identity = 45/77 (58.44%), Postives = 55/77 (71.43%), Query Frame = 3
Query:    3 GWPEFAPYDAIHVGAAAPEIPQALIDQLKPGGRMVIPVGNI--FQDLKVVDKNQDGSLSIWSETSVRYVPLTSRDAQ 227
            G+ E APYDAIHVGAAAP +PQAL+DQLKPGGR+++PVG     Q L+  DK +DGS  +     V YVPLT +D Q
Sbjct:  146 GFTEEAPYDAIHVGAAAPTVPQALLDQLKPGGRLILPVGPAGGNQMLEQYDKLEDGSTKMKPLMGVIYVPLTDKDKQ 222          
The following BLAST results are available for this feature:
BLAST of CX046757 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
PIMT_ARATH3.803e-3488.46Protein-L-isoaspartate O-methyltransferase OS=Arab... [more]
PIMT_WHEAT3.447e-2772.73Protein-L-isoaspartate O-methyltransferase OS=Trit... [more]
PIMT_HUMAN4.990e-1858.02Protein-L-isoaspartate(D-aspartate) O-methyltransf... [more]
PIMT_PONAB6.517e-1858.02Protein-L-isoaspartate(D-aspartate) O-methyltransf... [more]
PIMT_PIG6.517e-1858.02Protein-L-isoaspartate(D-aspartate) O-methyltransf... [more]
PIMT_MOUSE6.517e-1858.02Protein-L-isoaspartate(D-aspartate) O-methyltransf... [more]
PIMT_MACFA6.517e-1858.02Protein-L-isoaspartate(D-aspartate) O-methyltransf... [more]
PIMT_RAT8.511e-1858.02Protein-L-isoaspartate(D-aspartate) O-methyltransf... [more]
PIMT_BOVIN3.234e-1756.79Protein-L-isoaspartate(D-aspartate) O-methyltransf... [more]
PIMT_DANRE7.205e-1758.44Protein-L-isoaspartate(D-aspartate) O-methyltransf... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10A06_g Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10A06-B11-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046757 ID=CX046757; Name=CX046757; organism=Citrus sinensis; type=EST; length=467bp
AAGGTTGGCCAGAGTTTGCTCCCTATGATGCAATACATGTTGGAGCAGCA
GCCCCAGAAATTCCTCAGGCACTTATTGACCAGTTGAAACCTGGAGGCAG
AATGGTGATTCCAGTTGGTAATATATTTCAGGATTTGAAGGTGGTTGACA
AGAACCAAGATGGCTCTCTTAGCATCTGGAGTGAAACCTCTGTTCGTTAT
GTCCCTCTTACCAGTCGGGATGCCCAGTTGCGGGGCTGGTGAGGTTGATT
TCTTTTTCACTTGAAGATGGTTGGCAAGCTTTTGGTTATAGGACCAGGTT
GGAATGTGGAACAGAATCTCACTCTAATCCAGTATCATTGTGGGTTTTTT
TGGTTTTTTTTTCTCCTCTAAATTTCCTTGTATGTGTGTGTGTATATATA
TATATATATATATAATAAGCAAGTTATGCAAGGTTGTCTAGTTTCCATTC
NAAAAAAAAAAAAAAAA
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