CN186180

Overview
NameCN186180
Unique NameCN186180
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length740
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186180_ssr76 microsatellite CN186180_ssr76:76..85. BLAST: Citrus ESTs to Prunus persica proteins V1
CN186180_ssr116 microsatellite CN186180_ssr116:116..125. BLAST: Citrus ESTs to Prunus persica proteins V1
CN186180_ssr170 microsatellite CN186180_ssr170:170..181. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2528 contig Csv1_Contig2528:1..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN186180 vs. ExPASy Swiss-Prot
Match: IF41_WHEAT (Eukaryotic initiation factor iso-4F subunit p82-34 OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.969e-17
Identity = 50/123 (40.65%), Postives = 72/123 (58.54%), Query Frame = 3 
Query:  351 GAGAAAPSLAFGSFSSDLPFLRPHGGAPP--SATGDSRFEGRERVRYTREQLLQLREAAVIDDDILKIKREFESEVFGEEQIWGRAENN--------PPNQPQSRYSEPDNRDWRRPAQSFPS 689
            G    AP+ A  +  S   FLRPHGG     S  GD   E RERVRY+R+QLL LR+   + + IL++++E E+E+ G++Q W R ++N        P  Q Q+R++E DNRDWR   +  P+
Sbjct:   21 GGRLFAPAFAVAASGSG-DFLRPHGGGASGVSRIGDLHSESRERVRYSRDQLLDLRKITDVTEQILRLQQEIEAELNGDDQSWVRNDSNVQLQTQAQPQVQAQNRFTETDNRDWRARTEKPPA 142
The following BLAST results are available for this feature:
BLAST of CN186180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
IF41_WHEAT2.969e-1740.65Eukaryotic initiation factor iso-4F subunit p82-34... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0002H22_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002H22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186180 ID=CN186180; Name=CN186180; organism=Citrus sinensis; type=EST; length=740bp
GCAGGCTCTCCTCAGAGAGAGAATTTCAATTACTCGTTTCTGTTTTCCTT
ATTACACACAAATATTATTAACTCTTCTCTCTCTCGTTCGCTTTCTCTCT
CTGTATCTCTATATCTATATATATAAATATCCTCTGTCAGCGTTACAACA
ATCGCTGCCGAGTCTTTTGTTATTATTATTATCTTCTTCGTTAAAAGTTT
TGATTTGTTTTTGGACGGCGGAGATTTGATCGAGGTATGCATCAAGGTGA
TCAGACGGTGTTGAGCTTGAGACCTGGCGGTGGTCGCGGTGGTGCTGGCG
GCGGCGGAGGCGGCAATAGCAGATTGTTTAGCGGGTCTCGTTTTGATTCT
GGAGCTGGCGCTGCTGCTCCTTCTTTAGCTTTTGGCTCTTTCTCTTCGGA
TCTCCCTTTCTTGCGTCCCCATGGCGGCGCCCCTCCTTCAGCGACTGGAG
ACTCACGGTTTGAGGGTCGCGAGCGGGTGCGGTACACTCGAGAGCAGCTG
TTGCAGCTCAGAGAGGCTGCTGTAATAGATGATGATATTCTCAAAATCAA
ACGAGAATTTGAATCTGAAGTCTTTGGTGAAGAACAAATCTGGGGACGTG
CGGAAAACAATCCACCGAACCAACCTCAGAGCCGTTACTCTGAGCCAGAT
AATCGTGACTGGCGTCGTCCTGCACAGTCTTTTCCTTCTGGAGAATTTAA
TCGAGATAACAGAGAGTTTGGCGGACGATATGACTTCAGG
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