CN186178

Overview
NameCN186178
Unique NameCN186178
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length710
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1828 contig Csv1_Contig1828:117..826. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN186178 vs. ExPASy Swiss-Prot
Match: TSJT1_TOBAC (Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.682e-22
Identity = 56/139 (40.29%), Postives = 80/139 (57.55%), Query Frame = 3 
Query:    9 PPEELHSPASQKCSKRPKLPEDTLSDFLSRHSDNTFSMNFGHAAVLAYVPPHSPLTKDRRLFCGFEDIYCLFMGSLNNLCSLIRQYGLSKGTDEAMFVIEAYRTLRDRGPYPADQVVKDLDGSFAFVVYDSKAGTVFTA 425
            PP EL  P +    K  K  E+    F +   D+TF   F    +       +PL    R     +D++C+F G+L+N   L + YGLS+   EAM ++EAY+ LRDR PYP DQV+K+L+G FAF+++DSKA T+F A
Sbjct:   12 PPPELSLPQAGIQKKEAKTREEIAESFKTWKQDSTFYHLFNGNFMAFSHGNENPLQP--RSIVVMDDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAPYPPDQVIKELEGKFAFILFDSKASTLFLA 148
The following BLAST results are available for this feature:
BLAST of CN186178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TSJT1_TOBAC1.682e-2240.29Stem-specific protein TSJT1 OS=Nicotiana tabacum G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0002H21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002H21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186178 ID=CN186178; Name=CN186178; organism=Citrus sinensis; type=EST; length=710bp
AGGCCAATCCGCCTGAGGAGCTTCATAGCCCTGCGTCTCAAAAATGTTCG
AAGAGGCCTAAACTCCCTGAGGATACCCTCAGTGACTTCCTCTCCCGTCA
CTCTGATAACACTTTCTCCATGAACTTTGGCCATGCTGCTGTTCTTGCTT
ACGTTCCCCCTCACTCCCCTTTAACCAAGGACCGAAGGTTGTTTTGCGGG
TTTGAGGACATATACTGTCTGTTCATGGGGTCCTTGAACAACTTGTGCTC
GCTGATCAGGCAATATGGGTTGTCAAAGGGAACCGATGAGGCCATGTTTG
TGATAGAGGCGTATCGTACGCTCAGAGACCGGGGTCCTTACCCAGCTGAT
CAGGTTGTCAAGGATCTTGATGGGAGCTTTGCTTTTGTGGTCTACGATAG
CAAGGCCGGCACGGTCTTCACTGCTCTGGGTTCTGATGGGGGAGTGAAGC
TGTACTGGGGAATTGCAGCCGATGGATCTGTGGTCATATCTGATGACTTG
GAGGTCATCAAAGAGGGATGTGCCAAGTCATTTGCTCCCTTCCCACAGGG
GTGCATGTTCCACAGTGAAGGAGGATTGATGAGCTTTGAGCATCCAATGA
ACAAGATAAGGGCAATGCCAAGAGTAGATAGTGAAGGTGTCATGTGTGGA
GCCAATTTCAAGGTTGATAAATACACTAGGATCAACAGCATTCCACGTGT
GGGAAGTGAA
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