CN186175

Overview
NameCN186175
Unique NameCN186175
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig84 contig Csv1_Contig84:367..1133. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: RUB1_BRANA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Brassica napus PE=2 SV=2)

HSP 1 Score: 285.419 bits (729), Expect = 1.175e-78
Identity = 155/197 (78.68%), Postives = 163/197 (82.74%), Query Frame = -1
Query:  131 IAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIXXXXXXXXXXXXXXPQGLMV 721
            I+QLKKEL+ETDSVYDSEKLAERIAKL+GGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGA LVHLS  +PAIK+KLEDADERLGADIVQKALVAPA+LIA NA             SEW  GYNAMTD YEN+L+AGVIDPAKVTRCALQNAASVAGMVLTTQAI              PQGLMV
Sbjct:  350 ISQLKKELSETDSVYDSEKLAERIAKLAGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGATLVHLSTVIPAIKEKLEDADERLGADIVQKALVAPAALIAQNAGIEGEVVVEKIMFSEWEIGYNAMTDTYENLLEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVDKPKPKAPTAAPPQGLMV 546          

HSP 2 Score: 29.6462 bits (65), Expect = 1.175e-78
Identity = 13/15 (86.67%), Postives = 15/15 (100.00%), Query Frame = -3
Query:  723 TIIADAASKDEIQAR 767
            T+IADAASKDE+QAR
Sbjct:  335 TLIADAASKDELQAR 349          
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: RUBA_PEA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 284.648 bits (727), Expect = 1.998e-78
Identity = 152/197 (77.16%), Postives = 164/197 (83.25%), Query Frame = -1
Query:  131 IAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIXXXXXXXXXXXXXXPQGLMV 721
            +AQLKKEL+ETDS+YDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGG ALVHLS +VPAIK+KLEDADERLGADIVQKALVAPA+LIA NA           K+ EW  GYNAMTD YEN++++GVIDPAKVTRCALQNAASVAGMVLTTQAI              PQGL +
Sbjct:  391 VAQLKKELSETDSIYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGTALVHLSGYVPAIKEKLEDADERLGADIVQKALVAPAALIAQNAGIEGEVVVEKIKNGEWEVGYNAMTDTYENLVESGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKAAVAAAPQGLTI 587          

HSP 2 Score: 29.6462 bits (65), Expect = 1.998e-78
Identity = 14/21 (66.67%), Postives = 17/21 (80.95%), Query Frame = -3
Query:  705 TIIADAASKDEIQARNCTAEK 767
            TIIADAASKDE+Q+R    +K
Sbjct:  376 TIIADAASKDELQSRVAQLKK 396          
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: RUBA_ARATH (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Arabidopsis thaliana GN=At2g28000 PE=1 SV=2)

HSP 1 Score: 278.485 bits (711), Expect = 1.074e-76
Identity = 151/197 (76.65%), Postives = 160/197 (81.22%), Query Frame = -1
Query:  131 IAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIXXXXXXXXXXXXXXPQGLMV 721
            IAQLKKEL ETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLS  +PAIK+  EDADERLGADIVQKAL++PA+LIA NA             S+W  GYNAMTD YEN+ +AGVIDPAKVTRCALQNAASVAGMVLTTQAI              P+GLMV
Sbjct:  390 IAQLKKELFETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSTVIPAIKETFEDADERLGADIVQKALLSPAALIAQNAGVEGEVVVEKIMFSDWENGYNAMTDTYENLFEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVDKPKPKAPAAAAPEGLMV 586          

HSP 2 Score: 30.0314 bits (66), Expect = 1.074e-76
Identity = 14/21 (66.67%), Postives = 17/21 (80.95%), Query Frame = -3
Query:  705 TIIADAASKDEIQARNCTAEK 767
            T+IADAASKDE+QAR    +K
Sbjct:  375 TLIADAASKDELQARIAQLKK 395          
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: RUBA_WHEAT (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 1.828e-76
Identity = 143/177 (80.79%), Postives = 158/177 (89.27%), Query Frame = -1
Query:  191 IAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 721
            +AQLKKEL+ETDS+YDSEKLAERIAKLSGGVAVIKVGA TETELEDR+LRIEDAKNATFAAIEEGIVPGGGAA VHLS +VPAIK+ +ED DERLGADI+QKAL APASLIA+NA           K+SEW  GYNAMTDKYEN++++GVIDPAKVTRCALQNAASV+GMVLTTQAI
Sbjct:  346 VAQLKKELSETDSIYDSEKLAERIAKLSGGVAVIKVGATTETELEDRQLRIEDAKNATFAAIEEGIVPGGGAAYVHLSTYVPAIKETIEDHDERLGADIIQKALQAPASLIANNAGVEGEVVIEKIKESEWEMGYNAMTDKYENLIESGVIDPAKVTRCALQNAASVSGMVLTTQAI 522          

HSP 2 Score: 30.8018 bits (68), Expect = 1.828e-76
Identity = 15/21 (71.43%), Postives = 17/21 (80.95%), Query Frame = -3
Query:  705 TIIADAASKDEIQARNCTAEK 767
            T+IADAASKDEIQAR    +K
Sbjct:  331 TLIADAASKDEIQARVAQLKK 351          
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: RUB2_BRANA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 1.991e-72
Identity = 150/204 (73.53%), Postives = 159/204 (77.94%), Query Frame = -1
Query:  131 RMKYKLEIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIXXXXXXXXXXXXXXPQGLMV 742
            + + +  I+QLKKE  ETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGA LVHLS  +PAIK+  EDAD RLGADIVQKALVA  SLIA NA             SEW  GYNAMTD YEN+L+AGVIDPAKVTRCALQNAASVAGMVLTTQAI              P+GLMV
Sbjct:  381 KAELQARISQLKKESFETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGATLVHLSTVIPAIKETFEDADVRLGADIVQKALVA-QSLIAQNAGIEGEVVVEKIMFSEWELGYNAMTDTYENLLEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVDKPKPKAPAAAAPEGLMV 583          

HSP 2 Score: 26.5646 bits (57), Expect = 1.991e-72
Identity = 12/15 (80.00%), Postives = 14/15 (93.33%), Query Frame = -3
Query:  723 TIIADAASKDEIQAR 767
            T+IADAASK E+QAR
Sbjct:  373 TLIADAASKAELQAR 387          
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: RUBA_RICCO (RuBisCO large subunit-binding protein subunit alpha (Fragment) OS=Ricinus communis PE=2 SV=1)

HSP 1 Score: 252.677 bits (644), Expect = 7.488e-69
Identity = 135/163 (82.82%), Postives = 142/163 (87.12%), Query Frame = -1
Query:  233 IAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQN 721
            IAQLK+ELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLS  VPAI  + +DADERLGADI+QKALVAPASLIA NA           K  EW  GYNAMTDKYEN+++AGVIDPAKVTRCALQN
Sbjct:  333 IAQLKRELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSTVVPAINGEDKDADERLGADILQKALVAPASLIAQNAGIEGEVVVEKVKAREWEIGYNAMTDKYENLVEAGVIDPAKVTRCALQN 495          

HSP 2 Score: 29.6462 bits (65), Expect = 7.488e-69
Identity = 13/15 (86.67%), Postives = 15/15 (100.00%), Query Frame = -3
Query:  723 TIIADAASKDEIQAR 767
            T+IADAASKDE+QAR
Sbjct:  318 TLIADAASKDELQAR 332          
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: RUBA_CHLRE (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 8.107e-65
Identity = 127/180 (70.56%), Postives = 145/180 (80.56%), Query Frame = -1
Query:  191 KLEIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 730
            ++ IAQLKKELAETDSVYD+EKL+ERIAKLSGGVAVIKVGAATE ELEDRKLRIEDAKNATFAA+EEGIVPGGGAAL+HLS+ VPA K+ L DA+E+LGADIV K+L AP  LIA NA               +  GYNAM DK EN+L AGVIDPAKVTR  L N+ S+AG++LTTQA+
Sbjct:  376 EMRIAQLKKELAETDSVYDTEKLSERIAKLSGGVAVIKVGAATEAELEDRKLRIEDAKNATFAAVEEGIVPGGGAALLHLSELVPAFKETLTDAEEKLGADIVMKSLRAPCRLIADNAGVEGEVIVQRLLGKPFEVGYNAMIDKVENLLDAGVIDPAKVTRNGLLNSVSIAGIMLTTQAV 555          

HSP 2 Score: 27.7202 bits (60), Expect = 8.107e-65
Identity = 13/21 (61.90%), Postives = 16/21 (76.19%), Query Frame = -3
Query:  705 TIIADAASKDEIQARNCTAEK 767
            T+IADAASKDEI+ R    +K
Sbjct:  364 TLIADAASKDEIEMRIAQLKK 384          
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: CH601_TRIEI (60 kDa chaperonin 1 OS=Trichodesmium erythraeum (strain IMS101) GN=groL1 PE=3 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 7.279e-54
Identity = 106/180 (58.89%), Postives = 139/180 (77.22%), Query Frame = -1
Query:  191 KLEIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 730
            K  IAQ++K+L E+DS YD EKL ERIAKL+GGVAVIKVGAATETEL+DRKLRIEDA NAT AA+EEGIVPGGG  L+HLS  V  +K  L + +E++GADIV++AL AP + IA+N+           + ++++ GYN +T +YE+++ AG++DPA V R ALQNA S+AGMVLTT+A+
Sbjct:  341 KKRIAQIRKQLGESDSDYDKEKLQERIAKLAGGVAVIKVGAATETELKDRKLRIEDALNATKAAVEEGIVPGGGTTLIHLSTKVEELKGSLNNEEEKIGADIVRRALEAPLNQIANNSGVEGSVIVEKVRSTDFSVGYNVITGEYEDLIAAGILDPAMVVRSALQNAGSIAGMVLTTEAV 520          
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: CH602_ANAVT (60 kDa chaperonin 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=groL2 PE=3 SV=2)

HSP 1 Score: 209.534 bits (532), Expect = 1.622e-53
Identity = 112/177 (63.28%), Postives = 139/177 (78.53%), Query Frame = -1
Query:  191 IAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 721
            IAQ++++L ETDS YDSEKL ERIAKL+GG+AVIKVGAATETEL+DRKLRIEDA NAT AA+ EGIVPGGG  L++L+  V  IK K  D +E++GADIV++AL AP   IA NA           KDS++ TGYNA T ++E+++ AG+IDPAKV R ALQNAAS+AG+VLTT+AI
Sbjct:  344 IAQIRRQLEETDSEYDSEKLQERIAKLAGGIAVIKVGAATETELKDRKLRIEDALNATKAAVAEGIVPGGGKTLIYLASKVDEIK-KNFDEEEKIGADIVKRALEAPLRQIADNAGVEGSVIVSRVKDSDFNTGYNAATGEFEDLIAAGIIDPAKVVRSALQNAASIAGLVLTTEAI 519          
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: CH601_ACAM1 (60 kDa chaperonin 1 OS=Acaryochloris marina (strain MBIC 11017) GN=groL1 PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.718e-53
Identity = 108/177 (61.02%), Postives = 138/177 (77.97%), Query Frame = -1
Query:  191 IAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 721
            + QL+++L ETDS YD EKL ERIAKL+GGVAVIKVGAATETEL+DRKLRIEDA NAT AA+ EGIVPGGG  L+HL+  + ++K +L+D +E++GAD+V  AL AP + IA NA           +D++++ GYNAMTD YE+M+ AGV+DPAKV R  LQNA S+AGMVLTT+A+
Sbjct:  344 VEQLRRQLDETDSEYDKEKLQERIAKLAGGVAVIKVGAATETELKDRKLRIEDALNATKAAVAEGIVPGGGTTLIHLTKTIESVKAQLKD-EEKVGADLVGIALEAPLTQIADNAGKEGAVVVEKVRDADFSYGYNAMTDTYEDMIAAGVVDPAKVVRSGLQNAGSIAGMVLTTEAL 519          
The following BLAST results are available for this feature:
BLAST of CN186175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RUB1_BRANA1.175e-7878.68RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_PEA1.998e-7877.16RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_ARATH1.074e-7676.65RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_WHEAT1.828e-7680.79RuBisCO large subunit-binding protein subunit alph... [more]
RUB2_BRANA1.991e-7273.53RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_RICCO7.488e-6982.82RuBisCO large subunit-binding protein subunit alph... [more]
RUBA_CHLRE8.107e-6570.56RuBisCO large subunit-binding protein subunit alph... [more]
CH601_TRIEI7.279e-5458.8960 kDa chaperonin 1 OS=Trichodesmium erythraeum (s... [more]
CH602_ANAVT1.622e-5363.2860 kDa chaperonin 2 OS=Anabaena variabilis (strain... [more]
CH601_ACAM14.718e-5361.0260 kDa chaperonin 1 OS=Acaryochloris marina (strai... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002H20_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002H20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186175 ID=CN186175; Name=CN186175; organism=Citrus sinensis; type=EST; length=769bp
TTTTTTTTTTCGTACAAAAAGACACGATTTTATATCAATTAAGTAAAACT
CGCTTTTTTGAGTTCACCGCAATAAAACCACTCTTTCATCTATCTTACTC
CTAACTAAATCTGGAGAGTCCTAGAGATTACACCATAAGACCTTGTGGCG
GAGCGGCTACCGGAGTTTTGGGCTTTGGCTTCTCCACGACAATAGCCTGA
GTGGTCAGGACCATTCCTGCAACTGAAGCCGCATTCTGCAATGCACATCT
TGTCACCTTTGCAGGATCAATAACTCCAGCCTGAAGCATGTTCTCATACT
TGTCTGTCATTGCATTGTAACCAGTCGTCCATTCACTATCTTTCACCTTC
TCCACAACAACCTCACCTTCAACTCCAGCATTGTGAGCTATCAGTGATGC
AGGTGCTACCAGTGCCTTCTGCACAATGTCAGCACCTAATCGCTCATCTG
CATCTTCAAGCTTGTCCTTGATAGCAGGAACATGATCAGACAGATGAACC
AGAGCAGCACCACCACCAGGAACAATACCTTCCTCTATGGCTGCAAAAGT
TGCATTCTTGGCATCTTCAATACGGAGTTTACGGTCCTCAAGCTCAGTTT
CTGTGGCAGCTCCAACTTTAATAACAGCAACCCCGCCAGACAATTTAGCA
ATTCTCTCAGCAAGTTTCTCTGAGTCATAAACAGAATCCGTCTCAGCCAA
CTCCTTTTTCAGCTGTGCAATTTCTAGCTTGTATTTCATCCTTTGATGCA
GCATCAGCAATAATGGTAG
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