CN186175
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: RUB1_BRANA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Brassica napus PE=2 SV=2) HSP 1 Score: 285.419 bits (729), Expect = 1.175e-78 Identity = 155/197 (78.68%), Postives = 163/197 (82.74%), Query Frame = -1 Query: 131 IAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIXXXXXXXXXXXXXXPQGLMV 721 I+QLKKEL+ETDSVYDSEKLAERIAKL+GGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGA LVHLS +PAIK+KLEDADERLGADIVQKALVAPA+LIA NA SEW GYNAMTD YEN+L+AGVIDPAKVTRCALQNAASVAGMVLTTQAI PQGLMV Sbjct: 350 ISQLKKELSETDSVYDSEKLAERIAKLAGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGATLVHLSTVIPAIKEKLEDADERLGADIVQKALVAPAALIAQNAGIEGEVVVEKIMFSEWEIGYNAMTDTYENLLEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVDKPKPKAPTAAPPQGLMV 546 HSP 2 Score: 29.6462 bits (65), Expect = 1.175e-78 Identity = 13/15 (86.67%), Postives = 15/15 (100.00%), Query Frame = -3 Query: 723 TIIADAASKDEIQAR 767 T+IADAASKDE+QAR Sbjct: 335 TLIADAASKDELQAR 349
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: RUBA_PEA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Pisum sativum PE=1 SV=2) HSP 1 Score: 284.648 bits (727), Expect = 1.998e-78 Identity = 152/197 (77.16%), Postives = 164/197 (83.25%), Query Frame = -1 Query: 131 IAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIXXXXXXXXXXXXXXPQGLMV 721 +AQLKKEL+ETDS+YDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGG ALVHLS +VPAIK+KLEDADERLGADIVQKALVAPA+LIA NA K+ EW GYNAMTD YEN++++GVIDPAKVTRCALQNAASVAGMVLTTQAI PQGL + Sbjct: 391 VAQLKKELSETDSIYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGTALVHLSGYVPAIKEKLEDADERLGADIVQKALVAPAALIAQNAGIEGEVVVEKIKNGEWEVGYNAMTDTYENLVESGVIDPAKVTRCALQNAASVAGMVLTTQAIVVEKPKPKAAVAAAPQGLTI 587 HSP 2 Score: 29.6462 bits (65), Expect = 1.998e-78 Identity = 14/21 (66.67%), Postives = 17/21 (80.95%), Query Frame = -3 Query: 705 TIIADAASKDEIQARNCTAEK 767 TIIADAASKDE+Q+R +K Sbjct: 376 TIIADAASKDELQSRVAQLKK 396
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: RUBA_ARATH (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Arabidopsis thaliana GN=At2g28000 PE=1 SV=2) HSP 1 Score: 278.485 bits (711), Expect = 1.074e-76 Identity = 151/197 (76.65%), Postives = 160/197 (81.22%), Query Frame = -1 Query: 131 IAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIXXXXXXXXXXXXXXPQGLMV 721 IAQLKKEL ETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLS +PAIK+ EDADERLGADIVQKAL++PA+LIA NA S+W GYNAMTD YEN+ +AGVIDPAKVTRCALQNAASVAGMVLTTQAI P+GLMV Sbjct: 390 IAQLKKELFETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSTVIPAIKETFEDADERLGADIVQKALLSPAALIAQNAGVEGEVVVEKIMFSDWENGYNAMTDTYENLFEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVDKPKPKAPAAAAPEGLMV 586 HSP 2 Score: 30.0314 bits (66), Expect = 1.074e-76 Identity = 14/21 (66.67%), Postives = 17/21 (80.95%), Query Frame = -3 Query: 705 TIIADAASKDEIQARNCTAEK 767 T+IADAASKDE+QAR +K Sbjct: 375 TLIADAASKDELQARIAQLKK 395
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: RUBA_WHEAT (RuBisCO large subunit-binding protein subunit alpha, chloroplastic (Fragment) OS=Triticum aestivum PE=1 SV=1) HSP 1 Score: 276.944 bits (707), Expect = 1.828e-76 Identity = 143/177 (80.79%), Postives = 158/177 (89.27%), Query Frame = -1 Query: 191 IAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 721 +AQLKKEL+ETDS+YDSEKLAERIAKLSGGVAVIKVGA TETELEDR+LRIEDAKNATFAAIEEGIVPGGGAA VHLS +VPAIK+ +ED DERLGADI+QKAL APASLIA+NA K+SEW GYNAMTDKYEN++++GVIDPAKVTRCALQNAASV+GMVLTTQAI Sbjct: 346 VAQLKKELSETDSIYDSEKLAERIAKLSGGVAVIKVGATTETELEDRQLRIEDAKNATFAAIEEGIVPGGGAAYVHLSTYVPAIKETIEDHDERLGADIIQKALQAPASLIANNAGVEGEVVIEKIKESEWEMGYNAMTDKYENLIESGVIDPAKVTRCALQNAASVSGMVLTTQAI 522 HSP 2 Score: 30.8018 bits (68), Expect = 1.828e-76 Identity = 15/21 (71.43%), Postives = 17/21 (80.95%), Query Frame = -3 Query: 705 TIIADAASKDEIQARNCTAEK 767 T+IADAASKDEIQAR +K Sbjct: 331 TLIADAASKDEIQARVAQLKK 351
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: RUB2_BRANA (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Brassica napus PE=2 SV=1) HSP 1 Score: 267.7 bits (683), Expect = 1.991e-72 Identity = 150/204 (73.53%), Postives = 159/204 (77.94%), Query Frame = -1 Query: 131 RMKYKLEIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAIXXXXXXXXXXXXXXPQGLMV 742 + + + I+QLKKE ETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGA LVHLS +PAIK+ EDAD RLGADIVQKALVA SLIA NA SEW GYNAMTD YEN+L+AGVIDPAKVTRCALQNAASVAGMVLTTQAI P+GLMV Sbjct: 381 KAELQARISQLKKESFETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGATLVHLSTVIPAIKETFEDADVRLGADIVQKALVA-QSLIAQNAGIEGEVVVEKIMFSEWELGYNAMTDTYENLLEAGVIDPAKVTRCALQNAASVAGMVLTTQAIVVDKPKPKAPAAAAPEGLMV 583 HSP 2 Score: 26.5646 bits (57), Expect = 1.991e-72 Identity = 12/15 (80.00%), Postives = 14/15 (93.33%), Query Frame = -3 Query: 723 TIIADAASKDEIQAR 767 T+IADAASK E+QAR Sbjct: 373 TLIADAASKAELQAR 387
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: RUBA_RICCO (RuBisCO large subunit-binding protein subunit alpha (Fragment) OS=Ricinus communis PE=2 SV=1) HSP 1 Score: 252.677 bits (644), Expect = 7.488e-69 Identity = 135/163 (82.82%), Postives = 142/163 (87.12%), Query Frame = -1 Query: 233 IAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQN 721 IAQLK+ELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLS VPAI + +DADERLGADI+QKALVAPASLIA NA K EW GYNAMTDKYEN+++AGVIDPAKVTRCALQN Sbjct: 333 IAQLKRELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSTVVPAINGEDKDADERLGADILQKALVAPASLIAQNAGIEGEVVVEKVKAREWEIGYNAMTDKYENLVEAGVIDPAKVTRCALQN 495 HSP 2 Score: 29.6462 bits (65), Expect = 7.488e-69 Identity = 13/15 (86.67%), Postives = 15/15 (100.00%), Query Frame = -3 Query: 723 TIIADAASKDEIQAR 767 T+IADAASKDE+QAR Sbjct: 318 TLIADAASKDELQAR 332
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: RUBA_CHLRE (RuBisCO large subunit-binding protein subunit alpha, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1) HSP 1 Score: 241.121 bits (614), Expect = 8.107e-65 Identity = 127/180 (70.56%), Postives = 145/180 (80.56%), Query Frame = -1 Query: 191 KLEIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 730 ++ IAQLKKELAETDSVYD+EKL+ERIAKLSGGVAVIKVGAATE ELEDRKLRIEDAKNATFAA+EEGIVPGGGAAL+HLS+ VPA K+ L DA+E+LGADIV K+L AP LIA NA + GYNAM DK EN+L AGVIDPAKVTR L N+ S+AG++LTTQA+ Sbjct: 376 EMRIAQLKKELAETDSVYDTEKLSERIAKLSGGVAVIKVGAATEAELEDRKLRIEDAKNATFAAVEEGIVPGGGAALLHLSELVPAFKETLTDAEEKLGADIVMKSLRAPCRLIADNAGVEGEVIVQRLLGKPFEVGYNAMIDKVENLLDAGVIDPAKVTRNGLLNSVSIAGIMLTTQAV 555 HSP 2 Score: 27.7202 bits (60), Expect = 8.107e-65 Identity = 13/21 (61.90%), Postives = 16/21 (76.19%), Query Frame = -3 Query: 705 TIIADAASKDEIQARNCTAEK 767 T+IADAASKDEI+ R +K Sbjct: 364 TLIADAASKDEIEMRIAQLKK 384
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: CH601_TRIEI (60 kDa chaperonin 1 OS=Trichodesmium erythraeum (strain IMS101) GN=groL1 PE=3 SV=1) HSP 1 Score: 210.69 bits (535), Expect = 7.279e-54 Identity = 106/180 (58.89%), Postives = 139/180 (77.22%), Query Frame = -1 Query: 191 KLEIAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 730 K IAQ++K+L E+DS YD EKL ERIAKL+GGVAVIKVGAATETEL+DRKLRIEDA NAT AA+EEGIVPGGG L+HLS V +K L + +E++GADIV++AL AP + IA+N+ + ++++ GYN +T +YE+++ AG++DPA V R ALQNA S+AGMVLTT+A+ Sbjct: 341 KKRIAQIRKQLGESDSDYDKEKLQERIAKLAGGVAVIKVGAATETELKDRKLRIEDALNATKAAVEEGIVPGGGTTLIHLSTKVEELKGSLNNEEEKIGADIVRRALEAPLNQIANNSGVEGSVIVEKVRSTDFSVGYNVITGEYEDLIAAGILDPAMVVRSALQNAGSIAGMVLTTEAV 520
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: CH602_ANAVT (60 kDa chaperonin 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=groL2 PE=3 SV=2) HSP 1 Score: 209.534 bits (532), Expect = 1.622e-53 Identity = 112/177 (63.28%), Postives = 139/177 (78.53%), Query Frame = -1 Query: 191 IAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 721 IAQ++++L ETDS YDSEKL ERIAKL+GG+AVIKVGAATETEL+DRKLRIEDA NAT AA+ EGIVPGGG L++L+ V IK K D +E++GADIV++AL AP IA NA KDS++ TGYNA T ++E+++ AG+IDPAKV R ALQNAAS+AG+VLTT+AI Sbjct: 344 IAQIRRQLEETDSEYDSEKLQERIAKLAGGIAVIKVGAATETELKDRKLRIEDALNATKAAVAEGIVPGGGKTLIYLASKVDEIK-KNFDEEEKIGADIVKRALEAPLRQIADNAGVEGSVIVSRVKDSDFNTGYNAATGEFEDLIAAGIIDPAKVVRSALQNAASIAGLVLTTEAI 519
BLAST of CN186175 vs. ExPASy Swiss-Prot
Match: CH601_ACAM1 (60 kDa chaperonin 1 OS=Acaryochloris marina (strain MBIC 11017) GN=groL1 PE=3 SV=1) HSP 1 Score: 207.994 bits (528), Expect = 4.718e-53 Identity = 108/177 (61.02%), Postives = 138/177 (77.97%), Query Frame = -1 Query: 191 IAQLKKELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSDHVPAIKDKLEDADERLGADIVQKALVAPASLIAHNAXXXXXXXXXXXKDSEWTTGYNAMTDKYENMLQAGVIDPAKVTRCALQNAASVAGMVLTTQAI 721 + QL+++L ETDS YD EKL ERIAKL+GGVAVIKVGAATETEL+DRKLRIEDA NAT AA+ EGIVPGGG L+HL+ + ++K +L+D +E++GAD+V AL AP + IA NA +D++++ GYNAMTD YE+M+ AGV+DPAKV R LQNA S+AGMVLTT+A+ Sbjct: 344 VEQLRRQLDETDSEYDKEKLQERIAKLAGGVAVIKVGAATETELKDRKLRIEDALNATKAAVAEGIVPGGGTTLIHLTKTIESVKAQLKD-EEKVGADLVGIALEAPLTQIADNAGKEGAVVVEKVRDADFSYGYNAMTDTYEDMIAAGVVDPAKVVRSGLQNAGSIAGMVLTTEAL 519 The following BLAST results are available for this feature:
BLAST of CN186175 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN186175 ID=CN186175; Name=CN186175; organism=Citrus sinensis; type=EST; length=769bpback to top |