CN186159

Overview
NameCN186159
Unique NameCN186159
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length615
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186159_ssr409 microsatellite CN186159_ssr409:409..420. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13569 contig Csv1_Contig13569:80..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186159 vs. ExPASy Swiss-Prot
Match: RIBBA_ARATH (Riboflavin biosynthesis protein ribBA, chloroplastic OS=Arabidopsis thaliana GN=RIBBA PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 2.719e-25
Identity = 78/181 (43.09%), Postives = 100/181 (55.25%), Query Frame = 2
Query:  107 NVNFVSGFPSTKSL----LANGHSSYLAFVKLATK------SSISIK-GVGKTRATLISGEGDLLAYPNGNNLVAESTGADDQLVGIELQPDAIAFGALAADTAPT-TXXXXXXXXXXXXXXPTEGFSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVC 613
            ++N  S  PST SL    L+   ++ L  +   T       S+ SIK   GK +A +IS E DLL++ NGN  ++  +  DD+     L+ D+++ G LAAD+AP                 PT GFSSIPEAIEDIRQGK               L+MAAQLATPEAMAFIV+HGTGIVC
Sbjct:    3 SINLSSSSPSTISLSRSRLSQSSTTLLHGLHRVTLPSNHPLSTFSIKTNTGKVKAAVISREDDLLSFTNGNTPLSNGSLIDDRTEE-PLEADSVSLGTLAADSAPAPANGFVAEDDDFELDLPTPGFSSIPEAIEDIRQGKLVVVVDDEDRENEGDLVMAAQLATPEAMAFIVRHGTGIVC 182          
The following BLAST results are available for this feature:
BLAST of CN186159 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RIBBA_ARATH2.719e-2543.09Riboflavin biosynthesis protein ribBA, chloroplast... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0002H09_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002H09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186159 ID=CN186159; Name=CN186159; organism=Citrus sinensis; type=EST; length=615bp
GAGGCTTAAACCCATAACAAATACAAGGGGAAAATAATTAATGGCGGCGT
CTCTCAACATATCTTCTCCTTCAACTTCAGCTCTCTCTTCTCCTCCAGCA
CGCAGAAATGTGAATTTTGTTAGTGGATTTCCCAGTACGAAGTCACTTTT
GGCAAATGGGCACTCTTCATATTTGGCCTTTGTAAAGCTAGCTACTAAAT
CATCCATTAGTATCAAGGGTGTCGGCAAAACTAGAGCTACACTGATATCT
GGAGAAGGTGACCTTTTAGCTTATCCCAATGGCAATAACCTTGTGGCCGA
AAGTACTGGTGCTGATGATCAATTGGTGGGGATTGAGTTACAACCGGATG
CAATAGCATTTGGAGCACTTGCAGCAGATACCGCTCCCACAACTTTTGGA
TTTTCCAGTGATGATGATGAATTTGATTTGGATAGCCCTACAGAAGGTTT
TTCTTCTATCCCCGAGGCCATTGAAGACATTCGCCAAGGAAAGTTTGTCG
TGGTCGTGGATGATGAAGATAGAGAAAATGAGGGAGATCTTATAATGGCA
GCACAGCTCGCAACACCTGAAGCTATGGCATTTATTGTAAAACATGGAAC
TGGAATTGTTTGCGT
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